Wall clock time and date at job start Sat Apr 11 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99861 * 2 1 4 4 H 1.48496 * 109.47078 * 269.99744 * 3 2 1 5 5 H 1.48498 * 109.46953 * 30.00026 * 3 2 1 6 6 H 1.48503 * 109.46934 * 150.00039 * 3 2 1 7 7 C 1.37875 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99765 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47243 * 179.97438 * 9 7 2 11 11 C 1.46900 * 111.00398 * 169.99882 * 10 9 7 12 12 C 1.53238 * 109.34081 * 187.25097 * 11 10 9 13 13 N 1.47079 * 108.52145 * 306.16854 * 12 11 10 14 14 C 1.34772 * 120.88127 * 231.18558 * 13 12 11 15 15 O 1.21347 * 120.00186 * 181.54223 * 14 13 12 16 16 C 1.49450 * 120.00022 * 1.53885 * 14 13 12 17 17 O 1.21350 * 120.00373 * 353.52266 * 16 14 13 18 18 N 1.34784 * 119.99849 * 173.51372 * 16 14 13 19 19 C 1.46498 * 119.99904 * 180.02562 * 18 16 14 20 20 C 1.52989 * 109.47371 * 180.02562 * 19 18 16 21 21 H 1.08998 * 109.49473 * 60.02890 * 20 19 18 22 22 C 1.53093 * 109.48547 * 180.02562 * 20 19 18 23 23 C 1.53177 * 109.16692 * 177.58963 * 22 20 19 24 24 C 1.53177 * 109.03528 * 303.01996 * 23 22 20 25 25 C 1.53099 * 109.16330 * 56.98047 * 24 23 22 26 26 O 1.42904 * 109.41243 * 302.38913 * 25 24 23 27 27 C 1.47080 * 118.23705 * 51.45987 * 13 12 11 28 28 C 1.46900 * 110.99650 * 294.29767 * 10 9 7 29 29 H 0.96995 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47572 * 59.99822 * 9 7 2 31 31 H 1.09002 * 109.47158 * 299.99699 * 9 7 2 32 32 H 1.09003 * 109.49241 * 67.28851 * 11 10 9 33 33 H 1.09003 * 109.49009 * 307.21368 * 11 10 9 34 34 H 1.08998 * 109.62764 * 186.45712 * 12 11 10 35 35 H 1.08999 * 109.62832 * 65.88084 * 12 11 10 36 36 H 0.96993 * 119.99820 * 0.02562 * 18 16 14 37 37 H 1.09005 * 109.47296 * 59.99942 * 19 18 16 38 38 H 1.09002 * 109.47193 * 300.00552 * 19 18 16 39 39 H 1.09005 * 109.51921 * 57.68692 * 22 20 19 40 40 H 1.08996 * 109.57431 * 297.52922 * 22 20 19 41 41 H 1.09000 * 109.54372 * 183.15392 * 23 22 20 42 42 H 1.08998 * 109.54390 * 62.88586 * 23 22 20 43 43 H 1.08996 * 109.52669 * 297.07568 * 24 23 22 44 44 H 1.08999 * 109.57406 * 176.91616 * 24 23 22 45 45 H 1.08997 * 109.47951 * 182.40422 * 25 24 23 46 46 H 1.08995 * 109.49104 * 62.37956 * 25 24 23 47 47 H 1.09003 * 109.62759 * 68.24700 * 27 13 12 48 48 H 1.08999 * 109.62775 * 188.83197 * 27 13 12 49 49 H 1.08995 * 109.49740 * 292.70724 * 28 10 9 50 50 H 1.09003 * 109.49176 * 52.78641 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5213 -4.8935 0.2387 12 6 2.5639 -6.0032 0.4114 13 7 3.4616 -5.9862 -0.7535 14 6 3.7119 -7.1123 -1.4504 15 8 4.4770 -7.0858 -2.3919 16 6 3.0471 -8.3937 -1.0636 17 8 2.3755 -8.4484 -0.0544 18 7 3.1935 -9.4887 -1.8358 19 6 2.5415 -10.7446 -1.4570 20 6 2.8665 -11.8212 -2.4943 21 1 3.9452 -11.9711 -2.5372 22 6 2.1847 -13.1336 -2.0990 23 6 2.4650 -14.1893 -3.1729 24 6 1.9773 -13.6659 -4.5274 25 6 2.6672 -12.3328 -4.8289 26 8 2.3911 -11.4063 -3.7765 27 6 4.0838 -4.7090 -1.1340 28 6 2.9767 -3.6491 -1.2494 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8903 32 1 0.8796 -5.1263 -0.6111 33 1 0.9161 -4.8191 1.1423 34 1 2.0633 -6.9694 0.4739 35 1 3.1396 -5.8265 1.3200 36 1 3.7305 -9.4450 -2.6423 37 1 1.4625 -10.5953 -1.4136 38 1 2.9039 -11.0616 -0.4791 39 1 1.1094 -12.9750 -2.0162 40 1 2.5773 -13.4751 -1.1413 41 1 1.9363 -15.1100 -2.9260 42 1 3.5363 -14.3843 -3.2216 43 1 0.8980 -13.5179 -4.4936 44 1 2.2219 -14.3871 -5.3071 45 1 2.2922 -11.9345 -5.7717 46 1 3.7434 -12.4888 -4.9028 47 1 4.8027 -4.4102 -0.3711 48 1 4.5885 -4.8191 -2.0938 49 1 2.3148 -3.8992 -2.0785 50 1 3.4271 -2.6721 -1.4251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602237923.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:21 Heat of formation + Delta-G solvation = -119.141515 kcal Electronic energy + Delta-G solvation = -29840.271653 eV Core-core repulsion = 25674.028598 eV Total energy + Delta-G solvation = -4166.243055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08599 -40.58058 -39.82593 -39.00928 -36.64189 -35.69125 -34.57895 -34.37354 -32.61828 -32.17904 -30.24468 -28.60569 -27.41393 -25.85905 -24.99711 -24.31708 -23.67819 -22.96824 -22.02252 -21.20151 -20.65669 -18.89711 -18.43317 -18.17790 -17.62685 -17.18265 -16.97888 -16.88012 -16.59031 -16.17066 -16.07175 -15.74789 -15.51376 -15.38836 -15.36573 -15.26965 -14.99026 -14.39531 -14.15405 -14.03445 -13.88190 -13.65638 -13.52985 -13.19001 -13.10568 -12.82857 -12.75298 -12.58318 -12.35487 -12.23628 -12.22358 -12.06113 -11.99711 -11.76331 -11.65334 -11.35329 -11.26315 -10.63189 -10.46377 -10.40587 -10.18127 -9.92384 -9.09219 -8.20620 -6.31045 0.25630 1.19211 1.42489 1.43734 1.55481 2.04255 2.34025 2.41500 2.71569 3.11440 3.19030 3.24649 3.63531 3.89158 3.93054 3.93666 4.01685 4.03123 4.12307 4.20174 4.23675 4.29503 4.40075 4.47065 4.51476 4.55484 4.67043 4.69509 4.75794 4.81265 4.87561 4.90089 4.92784 4.99325 5.07263 5.09944 5.15337 5.18299 5.20359 5.25478 5.38977 5.41087 5.63207 5.90239 6.02050 6.13675 6.24075 6.26877 6.54998 6.60888 6.83899 6.85380 7.38717 8.90628 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.001898 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.387895 B =14745.793336 C =14827.327078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.068 0.932 9 C 0.207 3.793 10 N -0.540 5.540 11 C 0.041 3.959 12 C 0.073 3.927 13 N -0.577 5.577 14 C 0.503 3.497 15 O -0.548 6.548 16 C 0.515 3.485 17 O -0.523 6.523 18 N -0.680 5.680 19 C 0.123 3.877 20 C 0.080 3.920 21 H 0.079 0.921 22 C -0.146 4.146 23 C -0.121 4.121 24 C -0.156 4.156 25 C 0.054 3.946 26 O -0.401 6.401 27 C 0.121 3.879 28 C 0.055 3.945 29 H 0.264 0.736 30 H -0.041 1.041 31 H 0.009 0.991 32 H 0.015 0.985 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.081 0.919 36 H 0.419 0.581 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.061 0.939 47 H 0.090 0.910 48 H 0.100 0.900 49 H 0.012 0.988 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -31.304 -6.330 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.081 3.919 10 N -0.265 5.265 11 C -0.088 4.088 12 C -0.047 4.047 13 N -0.309 5.309 14 C 0.286 3.714 15 O -0.427 6.427 16 C 0.296 3.704 17 O -0.402 6.402 18 N -0.332 5.332 19 C 0.000 4.000 20 C 0.022 3.978 21 H 0.097 0.903 22 C -0.184 4.184 23 C -0.159 4.159 24 C -0.194 4.194 25 C -0.022 4.022 26 O -0.321 6.321 27 C -0.001 4.001 28 C -0.074 4.074 29 H 0.073 0.927 30 H -0.024 1.024 31 H 0.027 0.973 32 H 0.033 0.967 33 H 0.103 0.897 34 H 0.176 0.824 35 H 0.100 0.900 36 H 0.257 0.743 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.030 0.970 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.777 -30.999 -5.759 32.474 hybrid contribution -0.497 1.055 -1.057 1.574 sum 7.280 -29.943 -6.816 31.560 Atomic orbital electron populations 1.70094 1.07808 1.27921 1.51715 1.25946 0.95748 1.03311 0.94774 0.85345 0.78591 0.78096 0.78352 1.19920 1.20886 1.18682 1.21458 0.93784 0.90801 1.50099 0.91417 1.19395 0.90087 0.88885 0.93522 1.62062 1.27174 1.03019 1.34204 1.22516 0.95928 0.89854 1.00533 1.23323 0.91522 1.03091 0.86808 1.48228 1.45080 1.07858 1.29767 1.20227 0.82811 0.85439 0.82963 1.90717 1.37199 1.85793 1.28970 1.19940 0.81334 0.85133 0.83999 1.90343 1.40793 1.82855 1.26171 1.45674 1.50767 1.09449 1.27263 1.21762 0.98678 0.81153 0.98376 1.22391 0.98849 0.93375 0.83173 0.90280 1.22127 1.01726 0.94015 1.00553 1.21593 1.02113 0.98299 0.93849 1.22194 1.01005 0.97521 0.98692 1.22746 0.99807 0.89515 0.90096 1.87960 1.81034 1.46173 1.16932 1.21990 0.94875 0.80571 1.02642 1.22384 0.95357 0.99665 0.89998 0.92706 1.02378 0.97323 0.96693 0.89658 0.82407 0.90033 0.74324 0.90770 0.87741 0.91219 0.88803 0.90335 0.90893 0.91872 0.89474 0.88547 0.92085 0.89162 0.88218 0.96969 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.52 -29.64 8.41 25.60 0.22 -29.42 16 8 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 9 C 0.21 11.24 4.72 85.56 0.40 11.64 16 10 N -0.54 -23.82 4.62 -898.86 -4.15 -27.97 16 11 C 0.04 1.53 5.62 86.38 0.49 2.01 16 12 C 0.07 2.29 6.35 86.35 0.55 2.84 16 13 N -0.58 -18.28 3.00 -818.63 -2.46 -20.74 16 14 C 0.50 15.05 7.77 87.27 0.68 15.73 16 15 O -0.55 -17.80 15.95 -3.24 -0.05 -17.85 16 16 C 0.51 13.18 7.81 87.27 0.68 13.86 16 17 O -0.52 -14.52 13.03 -3.25 -0.04 -14.56 16 18 N -0.68 -13.31 5.44 -464.41 -2.53 -15.83 16 19 C 0.12 1.79 5.37 86.38 0.46 2.25 16 20 C 0.08 0.90 2.73 30.62 0.08 0.99 16 21 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 22 C -0.15 -1.18 5.42 30.68 0.17 -1.01 16 23 C -0.12 -0.79 6.03 30.71 0.19 -0.61 16 24 C -0.16 -1.25 6.14 30.69 0.19 -1.06 16 25 C 0.05 0.57 6.84 72.02 0.49 1.07 16 26 O -0.40 -6.25 10.15 -148.98 -1.51 -7.77 16 27 C 0.12 3.94 6.62 86.50 0.57 4.51 16 28 C 0.05 2.19 5.47 86.54 0.47 2.66 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 31 H 0.01 0.50 7.97 -2.39 -0.02 0.48 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 3.12 7.99 -2.39 -0.02 3.10 16 34 H 0.16 4.73 3.92 -75.35 -0.30 4.43 16 35 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.42 7.87 7.84 -92.71 -0.73 7.15 16 37 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 0.68 8.14 -2.38 -0.02 0.67 16 40 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.10 3.07 7.07 -2.39 -0.02 3.05 16 49 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.09 3.65 6.67 -2.39 -0.02 3.63 16 Total: -1.00 -69.50 394.24 -2.40 -71.90 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.07 Total: 16.95 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 6.10 Total: 25.94 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -8.85 Total: -120.97 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.61 Total: -40.18 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -69.50 -2.40 -71.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602237923.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.237 kcal (2) G-P(sol) polarization free energy of solvation -69.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds