Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.82453 * 2 1 4 4 N 1.46503 * 109.47372 * 305.70616 * 3 2 1 5 5 C 1.34776 * 120.00283 * 180.02562 * 4 3 2 6 6 O 1.21347 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.49449 * 120.00242 * 180.02562 * 5 4 3 8 8 O 1.21347 * 119.99963 * 6.47091 * 7 5 4 9 9 N 1.34770 * 120.00114 * 186.48032 * 7 5 4 10 10 C 1.47093 * 120.86207 * 178.40087 * 9 7 5 11 11 C 1.53236 * 108.51719 * 231.18632 * 10 9 7 12 12 N 1.46904 * 109.36157 * 306.20619 * 11 10 9 13 13 C 1.46898 * 110.99995 * 187.23919 * 12 11 10 14 14 C 1.50700 * 109.47165 * 170.00126 * 13 12 11 15 15 H 1.08005 * 119.99783 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00184 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00142 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47056 * 120.00437 * 18 16 14 21 21 H 1.48499 * 109.47143 * 240.00115 * 18 16 14 22 22 C 1.46904 * 111.26555 * 63.09439 * 12 11 10 23 23 C 1.47083 * 120.88525 * 358.44626 * 9 7 5 24 24 C 1.54384 * 109.83226 * 120.88888 * 2 1 3 25 25 C 1.55453 * 102.18350 * 98.29639 * 24 2 1 26 26 C 1.54947 * 100.98887 * 34.04029 * 25 24 2 27 27 O 1.43237 * 109.82856 * 239.11471 * 2 1 3 28 28 H 1.09002 * 109.47694 * 59.29800 * 1 2 3 29 29 H 1.09002 * 109.47443 * 179.29611 * 1 2 3 30 30 H 1.09004 * 109.47249 * 299.29442 * 1 2 3 31 31 H 1.08999 * 109.47499 * 185.70293 * 3 2 1 32 32 H 1.08998 * 109.47587 * 65.70415 * 3 2 1 33 33 H 0.96999 * 119.99771 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.60775 * 111.49051 * 10 9 7 35 35 H 1.09003 * 109.65083 * 350.90600 * 10 9 7 36 36 H 1.09003 * 109.49570 * 186.23749 * 11 10 9 37 37 H 1.09002 * 109.49535 * 66.17958 * 11 10 9 38 38 H 1.08996 * 109.47540 * 289.99891 * 13 12 11 39 39 H 1.08999 * 109.47026 * 50.00060 * 13 12 11 40 40 H 0.96999 * 120.00575 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49605 * 56.85684 * 22 12 11 42 42 H 1.09005 * 109.49002 * 176.90888 * 22 12 11 43 43 H 1.09008 * 109.62064 * 9.07439 * 23 9 7 44 44 H 1.08998 * 109.62890 * 248.50258 * 23 9 7 45 45 H 1.09001 * 110.84747 * 216.43508 * 24 2 1 46 46 H 1.09002 * 110.84594 * 340.05606 * 24 2 1 47 47 H 1.08998 * 111.06067 * 276.12264 * 25 24 2 48 48 H 1.08997 * 111.18067 * 152.00970 * 25 24 2 49 49 H 1.08999 * 110.30924 * 204.68883 * 26 25 24 50 50 H 1.08998 * 110.39437 * 82.56239 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4392 0.0000 4 7 1.4561 2.1721 -1.1216 5 6 1.7707 3.4672 -1.3219 6 8 2.5445 4.0265 -0.5729 7 6 1.1656 4.2150 -2.4657 8 8 0.3040 3.6942 -3.1431 9 7 1.5770 5.4676 -2.7449 10 6 1.0195 6.2079 -3.8872 11 6 2.1797 6.7488 -4.7295 12 7 3.0862 7.5222 -3.8703 13 6 4.1170 8.1999 -4.6678 14 6 4.8706 9.1699 -3.7946 15 1 4.6101 9.2722 -2.7515 16 6 5.8926 9.9266 -4.3275 17 7 6.2095 9.8023 -5.5977 18 14 6.8262 11.1294 -3.2453 19 1 6.2797 11.0809 -1.8653 20 1 8.2643 10.7600 -3.2210 21 1 6.6773 12.5031 -3.7892 22 6 3.6937 6.6735 -2.8365 23 6 2.5957 6.1301 -1.9162 24 6 2.0537 -0.7456 1.2463 25 6 2.3713 -2.1562 0.6754 26 6 2.8423 -1.7962 -0.7562 27 8 2.0158 -0.6917 -1.1564 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3634 -1.0276 -0.0126 30 1 -0.3634 0.5028 0.8963 31 1 3.1340 1.4343 -0.1021 32 1 1.7743 1.9245 0.9366 33 1 0.8378 1.7249 -1.7205 34 1 0.4125 7.0373 -3.5244 35 1 0.4073 5.5400 -4.4933 36 1 1.7881 7.3923 -5.5174 37 1 2.7237 5.9167 -5.1763 38 1 4.8091 7.4607 -5.0708 39 1 3.6447 8.7406 -5.4879 40 1 6.9282 10.3349 -5.9727 41 1 4.2166 5.8422 -3.3093 42 1 4.4005 7.2623 -2.2517 43 1 3.0251 5.4104 -1.2191 44 1 2.1405 6.9522 -1.3640 45 1 2.9563 -0.2710 1.6314 46 1 1.2846 -0.8015 2.0166 47 1 1.4770 -2.7788 0.6498 48 1 3.1677 -2.6398 1.2410 49 1 2.6940 -2.6423 -1.4272 50 1 3.8913 -1.5002 -0.7478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602247897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -86.084535 kcal Electronic energy + Delta-G solvation = -30232.892233 eV Core-core repulsion = 26068.082637 eV Total energy + Delta-G solvation = -4164.809597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02097 -40.26013 -38.65797 -37.55506 -35.59635 -34.25335 -32.90955 -32.37562 -31.70982 -30.74745 -28.46513 -27.64728 -26.47925 -25.60422 -23.79849 -23.16221 -22.32957 -21.60342 -20.72467 -20.53778 -19.37697 -17.68041 -16.99120 -16.91918 -16.34013 -16.30386 -15.98579 -15.92251 -15.34087 -14.81500 -14.70862 -14.57419 -14.35117 -14.18063 -13.87001 -13.75265 -13.46722 -13.34875 -13.17333 -12.96612 -12.73713 -12.55271 -12.31020 -12.23314 -11.92433 -11.59874 -11.48630 -11.39828 -11.25566 -11.23559 -11.00682 -10.79428 -10.68642 -10.55439 -10.47293 -10.02749 -9.88873 -9.46865 -9.24227 -8.95275 -8.54914 -8.43196 -7.28093 -6.03307 -4.04834 1.43091 2.30006 3.20044 3.23890 3.31380 3.38798 3.43732 3.55914 3.89841 4.13061 4.25791 4.32660 4.42286 4.51248 4.55197 4.72922 4.90688 5.08285 5.10331 5.16560 5.19751 5.28240 5.31455 5.32200 5.36397 5.42943 5.46457 5.48161 5.56049 5.62961 5.71497 5.75547 5.82267 5.88656 6.01041 6.27082 6.34691 6.50676 6.58022 6.60830 6.67273 6.96946 7.25838 7.32023 7.41320 7.74059 7.78635 8.01436 8.05526 8.16232 8.51684 9.02882 9.59582 11.07621 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002206 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.908724 B =12687.364992 C =13413.321534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 C 0.115 3.885 4 N -0.693 5.693 5 C 0.511 3.489 6 O -0.508 6.508 7 C 0.503 3.497 8 O -0.537 6.537 9 N -0.569 5.569 10 C 0.113 3.887 11 C 0.041 3.959 12 N -0.537 5.537 13 C 0.193 3.807 14 C -0.507 4.507 15 H 0.065 0.935 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.052 3.948 23 C 0.056 3.944 24 C -0.143 4.143 25 C -0.155 4.155 26 C 0.049 3.951 27 O -0.368 6.368 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.027 0.973 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.022 0.978 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 -24.194 13.569 29.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 C -0.008 4.008 4 N -0.347 5.347 5 C 0.293 3.707 6 O -0.385 6.385 7 C 0.285 3.715 8 O -0.415 6.415 9 N -0.301 5.301 10 C -0.009 4.009 11 C -0.088 4.088 12 N -0.262 5.262 13 C 0.068 3.932 14 C -0.546 4.546 15 H 0.083 0.917 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.077 4.077 23 C -0.065 4.065 24 C -0.181 4.181 25 C -0.193 4.193 26 C -0.028 4.028 27 O -0.288 6.288 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.253 0.747 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.040 0.960 42 H 0.116 0.884 43 H 0.165 0.835 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.104 0.896 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.936 -23.565 13.629 29.337 hybrid contribution 0.958 -0.047 -0.184 0.977 sum -9.978 -23.612 13.445 28.946 Atomic orbital electron populations 1.22104 0.93169 1.03051 1.03027 1.22353 0.94959 0.91080 0.86352 1.21857 0.99035 0.90135 0.89794 1.45737 1.47399 1.10388 1.31213 1.20327 0.81821 0.82764 0.85789 1.90383 1.34910 1.66310 1.46891 1.19869 0.83649 0.82705 0.85267 1.90722 1.31895 1.67964 1.50951 1.48181 1.39636 1.12751 1.29514 1.21947 0.96350 0.95518 0.87057 1.22392 0.94397 0.96596 0.95416 1.62132 1.21649 1.27680 1.14789 1.19733 0.87767 0.92836 0.92887 1.21187 1.15407 1.21282 0.96693 0.91704 1.25000 0.97227 0.97349 0.95099 1.69966 1.30389 1.41184 1.12252 0.86436 0.79454 0.80802 0.80703 1.19590 1.21136 1.21034 1.22351 0.95430 0.95241 0.94670 1.23477 0.88817 0.99721 0.94462 1.23165 1.02573 0.95255 0.97106 1.23280 1.02459 0.97115 0.96412 1.23414 0.94824 0.89342 0.95195 1.88500 1.67070 1.43813 1.29398 0.91498 0.91511 0.90962 0.90311 0.89747 0.74686 0.90275 0.89196 0.89841 0.95519 0.99128 0.95055 0.92967 0.95970 0.88413 0.83510 0.90846 0.89795 0.89307 0.90239 0.89659 0.89559 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.50 37.16 0.32 -0.65 16 2 C 0.09 0.65 0.93 -89.90 -0.08 0.56 16 3 C 0.12 1.01 4.73 -4.04 -0.02 0.99 16 4 N -0.69 -7.68 5.21 -60.73 -0.32 -7.99 16 5 C 0.51 7.14 7.81 -11.59 -0.09 7.05 16 6 O -0.51 -7.78 13.03 5.50 0.07 -7.71 16 7 C 0.50 7.94 7.77 -11.59 -0.09 7.85 16 8 O -0.54 -9.06 15.95 5.50 0.09 -8.98 16 9 N -0.57 -9.37 3.01 -172.96 -0.52 -9.89 16 10 C 0.11 1.82 6.59 -3.60 -0.02 1.79 16 11 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 12 N -0.54 -11.67 4.62 -235.76 -1.09 -12.76 16 13 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 14 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 15 H 0.06 1.79 7.13 -52.48 -0.37 1.42 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 18 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.05 1.04 5.46 -3.70 -0.02 1.02 16 23 C 0.06 0.95 6.36 -3.60 -0.02 0.93 16 24 C -0.14 -0.67 6.10 -24.70 -0.15 -0.83 16 25 C -0.16 -0.66 7.16 -24.40 -0.17 -0.84 16 26 C 0.05 0.30 7.78 38.19 0.30 0.60 16 27 O -0.37 -3.28 10.65 -35.23 -0.38 -3.66 16 28 H 0.07 0.49 6.55 -51.93 -0.34 0.15 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.42 4.46 6.45 -40.82 -0.26 4.20 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.36 7.07 -51.93 -0.37 1.00 16 36 H 0.08 1.47 7.99 -51.93 -0.41 1.05 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 2.07 6.67 -51.93 -0.35 1.72 16 43 H 0.15 2.44 3.92 -56.53 -0.22 2.22 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 46 H 0.09 0.31 7.82 -51.93 -0.41 -0.09 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -32.60 393.55 -9.17 -41.78 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.18 Total: 1.46 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -0.49 Total: 11.21 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -1.19 Total: -56.67 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.22 Total: -20.34 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.60 -9.17 -41.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602247897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.306 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds