Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.82453 * 2 1 4 4 N 1.46503 * 109.47372 * 305.70616 * 3 2 1 5 5 C 1.34776 * 120.00283 * 180.02562 * 4 3 2 6 6 O 1.21347 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.49449 * 120.00242 * 180.02562 * 5 4 3 8 8 O 1.21347 * 119.99963 * 6.47091 * 7 5 4 9 9 N 1.34770 * 120.00114 * 186.48032 * 7 5 4 10 10 C 1.47093 * 120.86207 * 178.40087 * 9 7 5 11 11 C 1.53236 * 108.51719 * 231.18632 * 10 9 7 12 12 N 1.46904 * 109.36157 * 306.20619 * 11 10 9 13 13 C 1.46898 * 110.99995 * 187.23919 * 12 11 10 14 14 C 1.50700 * 109.47165 * 170.00126 * 13 12 11 15 15 H 1.08005 * 119.99783 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00184 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00142 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00045 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47015 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47056 * 120.00437 * 18 16 14 21 21 H 1.48499 * 109.47143 * 240.00115 * 18 16 14 22 22 C 1.46904 * 111.26555 * 63.09439 * 12 11 10 23 23 C 1.47083 * 120.88525 * 358.44626 * 9 7 5 24 24 C 1.54384 * 109.83226 * 120.88888 * 2 1 3 25 25 C 1.55453 * 102.18350 * 98.29639 * 24 2 1 26 26 C 1.54947 * 100.98887 * 34.04029 * 25 24 2 27 27 O 1.43237 * 109.82856 * 239.11471 * 2 1 3 28 28 H 1.09002 * 109.47694 * 59.29800 * 1 2 3 29 29 H 1.09002 * 109.47443 * 179.29611 * 1 2 3 30 30 H 1.09004 * 109.47249 * 299.29442 * 1 2 3 31 31 H 1.08999 * 109.47499 * 185.70293 * 3 2 1 32 32 H 1.08998 * 109.47587 * 65.70415 * 3 2 1 33 33 H 0.96999 * 119.99771 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.60775 * 111.49051 * 10 9 7 35 35 H 1.09003 * 109.65083 * 350.90600 * 10 9 7 36 36 H 1.09003 * 109.49570 * 186.23749 * 11 10 9 37 37 H 1.09002 * 109.49535 * 66.17958 * 11 10 9 38 38 H 1.08996 * 109.47540 * 289.99891 * 13 12 11 39 39 H 1.08999 * 109.47026 * 50.00060 * 13 12 11 40 40 H 0.96999 * 120.00575 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.49605 * 56.85684 * 22 12 11 42 42 H 1.09005 * 109.49002 * 176.90888 * 22 12 11 43 43 H 1.09008 * 109.62064 * 9.07439 * 23 9 7 44 44 H 1.08998 * 109.62890 * 248.50258 * 23 9 7 45 45 H 1.09001 * 110.84747 * 216.43508 * 24 2 1 46 46 H 1.09002 * 110.84594 * 340.05606 * 24 2 1 47 47 H 1.08998 * 111.06067 * 276.12264 * 25 24 2 48 48 H 1.08997 * 111.18067 * 152.00970 * 25 24 2 49 49 H 1.08999 * 110.30924 * 204.68883 * 26 25 24 50 50 H 1.08998 * 110.39437 * 82.56239 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4392 0.0000 4 7 1.4561 2.1721 -1.1216 5 6 1.7707 3.4672 -1.3219 6 8 2.5445 4.0265 -0.5729 7 6 1.1656 4.2150 -2.4657 8 8 0.3040 3.6942 -3.1431 9 7 1.5770 5.4676 -2.7449 10 6 1.0195 6.2079 -3.8872 11 6 2.1797 6.7488 -4.7295 12 7 3.0862 7.5222 -3.8703 13 6 4.1170 8.1999 -4.6678 14 6 4.8706 9.1699 -3.7946 15 1 4.6101 9.2722 -2.7515 16 6 5.8926 9.9266 -4.3275 17 7 6.2095 9.8023 -5.5977 18 14 6.8262 11.1294 -3.2453 19 1 6.2797 11.0809 -1.8653 20 1 8.2643 10.7600 -3.2210 21 1 6.6773 12.5031 -3.7892 22 6 3.6937 6.6735 -2.8365 23 6 2.5957 6.1301 -1.9162 24 6 2.0537 -0.7456 1.2463 25 6 2.3713 -2.1562 0.6754 26 6 2.8423 -1.7962 -0.7562 27 8 2.0158 -0.6917 -1.1564 28 1 -0.3634 0.5247 -0.8836 29 1 -0.3634 -1.0276 -0.0126 30 1 -0.3634 0.5028 0.8963 31 1 3.1340 1.4343 -0.1021 32 1 1.7743 1.9245 0.9366 33 1 0.8378 1.7249 -1.7205 34 1 0.4125 7.0373 -3.5244 35 1 0.4073 5.5400 -4.4933 36 1 1.7881 7.3923 -5.5174 37 1 2.7237 5.9167 -5.1763 38 1 4.8091 7.4607 -5.0708 39 1 3.6447 8.7406 -5.4879 40 1 6.9282 10.3349 -5.9727 41 1 4.2166 5.8422 -3.3093 42 1 4.4005 7.2623 -2.2517 43 1 3.0251 5.4104 -1.2191 44 1 2.1405 6.9522 -1.3640 45 1 2.9563 -0.2710 1.6314 46 1 1.2846 -0.8015 2.0166 47 1 1.4770 -2.7788 0.6498 48 1 3.1677 -2.6398 1.2410 49 1 2.6940 -2.6423 -1.4272 50 1 3.8913 -1.5002 -0.7478 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602247897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -110.358694 kcal Electronic energy + Delta-G solvation = -30233.944840 eV Core-core repulsion = 26068.082637 eV Total energy + Delta-G solvation = -4165.862203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13736 -40.95018 -39.86537 -39.02678 -36.66216 -35.73564 -34.39353 -33.45238 -32.27656 -32.22606 -30.19108 -28.52731 -27.58186 -26.73964 -25.10883 -24.65122 -23.47419 -22.72298 -21.85978 -21.34287 -20.59811 -18.86307 -18.51731 -18.17823 -17.48208 -17.24245 -17.04082 -16.76879 -16.61158 -16.25819 -16.03562 -15.78310 -15.65040 -15.41249 -15.33686 -14.95574 -14.57196 -14.34655 -14.08113 -13.95055 -13.71344 -13.57998 -13.45075 -13.11787 -13.03289 -12.94852 -12.74577 -12.64391 -12.60555 -12.35956 -12.16910 -12.13366 -12.00256 -11.88945 -11.74520 -11.62277 -11.29026 -10.63594 -10.58132 -10.42008 -10.21982 -9.93451 -9.10233 -8.21238 -6.31340 0.24206 1.18698 1.42078 1.42549 1.56497 2.02783 2.32658 2.41001 2.78252 3.10944 3.18967 3.24103 3.44490 3.63152 3.82664 3.91510 4.00384 4.03196 4.13941 4.19265 4.27298 4.34506 4.39414 4.49173 4.53085 4.59567 4.67245 4.70034 4.77902 4.82376 4.85406 4.90740 4.92892 4.97386 4.97910 5.07083 5.11026 5.16120 5.19155 5.28312 5.30910 5.37669 5.63452 5.88500 6.01235 6.08457 6.11677 6.26326 6.54077 6.59105 6.83728 6.84414 7.38431 8.90332 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002206 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.908724 B =12687.364992 C =13413.321534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.091 3.909 3 C 0.111 3.889 4 N -0.679 5.679 5 C 0.512 3.488 6 O -0.523 6.523 7 C 0.503 3.497 8 O -0.547 6.547 9 N -0.576 5.576 10 C 0.122 3.878 11 C 0.041 3.959 12 N -0.540 5.540 13 C 0.207 3.793 14 C -0.521 4.521 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.971 3.029 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.055 3.945 23 C 0.072 3.928 24 C -0.140 4.140 25 C -0.147 4.147 26 C 0.039 3.961 27 O -0.396 6.396 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.418 0.582 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.016 0.984 38 H -0.042 1.042 39 H 0.009 0.991 40 H 0.264 0.736 41 H 0.009 0.991 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 -25.121 15.907 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 C -0.012 4.012 4 N -0.331 5.331 5 C 0.293 3.707 6 O -0.402 6.402 7 C 0.286 3.714 8 O -0.426 6.426 9 N -0.308 5.308 10 C 0.000 4.000 11 C -0.088 4.088 12 N -0.265 5.265 13 C 0.081 3.919 14 C -0.560 4.560 15 H 0.085 0.915 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.796 3.204 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.204 1.204 22 C -0.074 4.074 23 C -0.049 4.049 24 C -0.178 4.178 25 C -0.185 4.185 26 C -0.037 4.037 27 O -0.316 6.316 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.256 0.744 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.035 0.965 38 H -0.024 1.024 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.102 0.898 43 H 0.173 0.827 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.109 0.891 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.740 -24.542 15.981 31.552 hybrid contribution 1.167 0.129 -0.972 1.525 sum -10.572 -24.412 15.009 30.545 Atomic orbital electron populations 1.22112 0.92540 1.03562 1.03012 1.22448 0.95386 0.89925 0.87060 1.22103 0.98517 0.91276 0.89259 1.45779 1.46517 1.09366 1.31468 1.20011 0.81908 0.83558 0.85229 1.90353 1.35810 1.66772 1.47292 1.20189 0.83307 0.82307 0.85561 1.90713 1.32357 1.68029 1.51508 1.48223 1.39736 1.13229 1.29654 1.21886 0.95134 0.96123 0.86877 1.22473 0.94483 0.96040 0.95772 1.62073 1.20495 1.28997 1.14899 1.19396 0.87926 0.92019 0.92539 1.21479 1.15880 1.21668 0.96935 0.91507 1.25941 0.98169 0.99222 0.96467 1.70093 1.31095 1.42288 1.14120 0.85303 0.77918 0.78132 0.79076 1.18466 1.20558 1.20441 1.22336 0.96437 0.94250 0.94378 1.23335 0.87966 1.00031 0.93533 1.23197 1.03194 0.95021 0.96356 1.23268 1.03178 0.97025 0.95013 1.23580 0.94463 0.88905 0.96776 1.88472 1.67538 1.44746 1.30846 0.92887 0.90729 0.89598 0.91148 0.88424 0.74399 0.88998 0.87927 0.89186 0.96541 1.02387 0.97276 0.92697 0.97233 0.89833 0.82668 0.90176 0.89468 0.87574 0.89582 0.88174 0.89058 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.50 71.98 0.61 -1.02 16 2 C 0.09 1.13 0.93 -10.33 -0.01 1.12 16 3 C 0.11 1.79 4.73 86.38 0.41 2.20 16 4 N -0.68 -14.29 5.21 -464.43 -2.42 -16.71 16 5 C 0.51 13.77 7.81 87.27 0.68 14.45 16 6 O -0.52 -15.45 13.03 -3.24 -0.04 -15.49 16 7 C 0.50 15.36 7.77 87.27 0.68 16.04 16 8 O -0.55 -17.82 15.95 -3.24 -0.05 -17.87 16 9 N -0.58 -18.43 3.01 -819.50 -2.47 -20.90 16 10 C 0.12 3.77 6.59 86.35 0.57 4.34 16 11 C 0.04 1.54 5.62 86.38 0.49 2.02 16 12 N -0.54 -23.87 4.62 -899.82 -4.16 -28.03 16 13 C 0.21 11.24 4.72 85.56 0.40 11.65 16 14 C -0.52 -29.65 8.41 25.60 0.22 -29.44 16 15 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 16 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 17 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 18 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C 0.05 2.22 5.46 86.38 0.47 2.70 16 23 C 0.07 2.39 6.36 86.35 0.55 2.94 16 24 C -0.14 -0.98 6.10 31.91 0.19 -0.78 16 25 C -0.15 -0.92 7.16 32.10 0.23 -0.69 16 26 C 0.04 0.44 7.78 72.65 0.57 1.00 16 27 O -0.40 -6.69 10.65 -148.98 -1.59 -8.28 16 28 H 0.05 0.70 6.55 -2.39 -0.02 0.69 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.42 8.59 6.45 -92.71 -0.60 8.00 16 34 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.10 2.96 7.07 -2.39 -0.02 2.94 16 36 H 0.09 3.20 7.99 -2.39 -0.02 3.18 16 37 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 38 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 39 H 0.01 0.53 7.97 -2.39 -0.02 0.51 16 40 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.08 3.60 6.67 -2.38 -0.02 3.59 16 43 H 0.16 5.03 3.92 -75.39 -0.30 4.74 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.09 0.57 7.85 -2.39 -0.02 0.55 16 46 H 0.11 0.40 7.82 -2.39 -0.02 0.38 16 47 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 48 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -70.35 393.55 -1.84 -72.19 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.06 Total: 18.13 kcal Atomic # 6 Polarization: 20.46 SS G_CDS: 6.52 Total: 26.97 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -8.76 Total: -122.14 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.68 Total: -41.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.35 -1.84 -72.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602247897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.167 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds