Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99949 * 2 1 4 4 O 1.20833 * 120.00105 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00041 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.29064 * 60.68265 * 5 3 2 7 7 C 1.54618 * 110.32738 * 182.93192 * 5 3 2 8 8 C 1.54598 * 102.90989 * 140.59239 * 7 5 3 9 9 N 1.48113 * 103.42431 * 322.86304 * 8 7 5 10 10 C 1.34777 * 127.03343 * 219.28739 * 9 8 7 11 11 O 1.21586 * 119.99621 * 179.69034 * 10 9 8 12 12 N 1.34771 * 120.00105 * 359.68658 * 10 9 8 13 13 C 1.46503 * 120.00087 * 180.02562 * 12 10 9 14 14 C 1.53038 * 109.46175 * 154.99850 * 13 12 10 15 15 C 1.53192 * 109.31320 * 181.36809 * 14 13 12 16 16 N 1.46927 * 108.77575 * 305.36936 * 15 14 13 17 17 C 1.36942 * 120.62895 * 233.58728 * 16 15 14 18 18 H 1.07997 * 119.99967 * 27.80579 * 17 16 15 19 19 C 1.38805 * 119.99870 * 208.08665 * 17 16 15 20 20 N 1.31623 * 120.00205 * 17.08666 * 19 17 16 21 21 Si 1.86801 * 120.00140 * 197.08819 * 19 17 16 22 22 H 1.48501 * 109.47011 * 89.99949 * 21 19 17 23 23 H 1.48501 * 109.47487 * 209.99852 * 21 19 17 24 24 H 1.48491 * 109.47051 * 330.00025 * 21 19 17 25 25 C 1.46926 * 118.74248 * 53.85727 * 16 15 14 26 26 C 1.53040 * 109.44376 * 275.05954 * 13 12 10 27 27 C 1.47481 * 105.93175 * 39.02937 * 9 8 7 28 28 H 1.08995 * 109.47327 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46764 * 299.99611 * 1 2 3 30 30 H 1.09006 * 109.46855 * 59.99349 * 1 2 3 31 31 H 1.08998 * 109.47327 * 299.32341 * 6 5 3 32 32 H 1.09006 * 109.46715 * 59.32115 * 6 5 3 33 33 H 1.08999 * 109.47322 * 179.31843 * 6 5 3 34 34 H 1.09003 * 110.73820 * 259.07912 * 7 5 3 35 35 H 1.08995 * 110.74233 * 22.22543 * 7 5 3 36 36 H 1.08998 * 110.61601 * 204.35037 * 8 7 5 37 37 H 1.09003 * 110.54740 * 81.35015 * 8 7 5 38 38 H 0.96994 * 119.99971 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.45872 * 35.01951 * 13 12 10 40 40 H 1.09003 * 109.49398 * 61.42025 * 14 13 12 41 41 H 1.09000 * 109.52450 * 301.34101 * 14 13 12 42 42 H 1.08992 * 109.59140 * 185.58070 * 15 14 13 43 43 H 1.08994 * 109.58582 * 65.15174 * 15 14 13 44 44 H 0.96997 * 120.00102 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.58556 * 65.92661 * 25 16 15 46 46 H 1.08998 * 109.59031 * 186.35594 * 25 16 15 47 47 H 1.09000 * 109.50062 * 298.57114 * 26 13 12 48 48 H 1.09002 * 109.49858 * 58.63742 * 26 13 12 49 49 H 1.09004 * 109.91858 * 94.13802 * 27 9 8 50 50 H 1.09000 * 109.91454 * 215.41548 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1335 0.6007 -1.2503 7 6 4.0269 2.7491 0.0746 8 6 5.2434 2.6835 1.0264 9 7 4.8446 1.6643 2.0244 10 6 5.0766 1.6937 3.3518 11 8 4.6844 0.7848 4.0576 12 7 5.7433 2.7306 3.8966 13 6 5.9959 2.7622 5.3393 14 6 7.2280 3.6247 5.6224 15 6 7.5092 3.6277 7.1283 16 7 6.2955 4.0587 7.8352 17 6 6.3391 5.0969 8.7271 18 1 7.0781 5.8762 8.6130 19 6 5.4373 5.1447 9.7812 20 7 4.7749 4.0621 10.1302 21 14 5.1636 6.7453 10.7046 22 1 4.0666 7.5087 10.0573 23 1 4.7962 6.4481 12.1124 24 1 6.4103 7.5514 10.6780 25 6 5.0352 3.3509 7.5715 26 6 4.7806 3.3547 6.0564 27 6 4.1362 0.6139 1.2695 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8900 31 1 3.8420 -0.4495 -1.2608 32 1 3.7415 1.0955 -2.1390 33 1 5.2208 0.6760 -1.2423 34 1 4.3239 3.1105 -0.9099 35 1 3.2420 3.3781 0.4945 36 1 5.4076 3.6482 1.5064 37 1 6.1350 2.3648 0.4863 38 1 6.0565 3.4555 3.3333 39 1 6.1715 1.7486 5.6995 40 1 7.0435 4.6445 5.2847 41 1 8.0883 3.2160 5.0924 42 1 8.3238 4.3181 7.3466 43 1 7.7826 2.6231 7.4509 44 1 4.1449 4.0954 10.8670 45 1 5.1110 2.3243 7.9294 46 1 4.2171 3.8588 8.0821 47 1 4.6192 4.3771 5.7147 48 1 3.8987 2.7536 5.8349 49 1 4.8319 -0.1790 0.9946 50 1 3.3246 0.2066 1.8725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610749392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -85.836550 kcal Electronic energy + Delta-G solvation = -30590.534515 eV Core-core repulsion = 26425.735672 eV Total energy + Delta-G solvation = -4164.798843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.36257 -40.03555 -38.37366 -37.15739 -36.64987 -34.38569 -33.43110 -31.92927 -30.08409 -29.94291 -29.41590 -28.08615 -26.91541 -25.10965 -24.16736 -22.94519 -22.19355 -21.80631 -20.05333 -19.87794 -19.35929 -18.15044 -17.59173 -16.98701 -16.86409 -16.58132 -16.06175 -15.83980 -14.90860 -14.60431 -14.46246 -14.30566 -13.97815 -13.76654 -13.46576 -13.40925 -13.37375 -13.05736 -12.97678 -12.80698 -12.60489 -12.46546 -12.29475 -12.26813 -12.01016 -11.53472 -11.44342 -11.21365 -11.13607 -11.07913 -10.89158 -10.71949 -10.70624 -10.35132 -10.19730 -10.08174 -9.96132 -9.72830 -9.52719 -8.95190 -8.56058 -8.35508 -6.66295 -5.75610 -3.18676 1.81297 2.25870 2.58210 3.33569 3.40012 3.46576 3.47926 3.79952 3.96003 4.18098 4.28946 4.51081 4.51773 4.71098 4.77724 4.86290 4.88733 5.08964 5.17409 5.18763 5.25035 5.33039 5.36202 5.40311 5.42408 5.49194 5.53558 5.58873 5.68621 5.74171 5.87120 5.97456 6.03072 6.12707 6.27186 6.40140 6.48290 6.63868 6.68499 6.81160 6.94176 6.98522 7.12235 7.36350 7.42955 7.72355 7.82407 8.07719 8.47840 8.74401 9.23744 9.87094 10.43795 11.32767 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.002367 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.236117 B =11824.071789 C =12459.641305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.475 3.525 4 O -0.500 6.500 5 C -0.068 4.068 6 C -0.136 4.136 7 C -0.120 4.120 8 C 0.102 3.898 9 N -0.645 5.645 10 C 0.725 3.275 11 O -0.583 6.583 12 N -0.736 5.736 13 C 0.168 3.832 14 C -0.138 4.138 15 C 0.149 3.851 16 N -0.593 5.593 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.147 4.147 27 C 0.141 3.859 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.389 0.611 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.021 0.979 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.089 0.911 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.081 0.919 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -6.800 -26.955 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.387 6.387 5 C -0.070 4.070 6 C -0.193 4.193 7 C -0.159 4.159 8 C -0.021 4.021 9 N -0.385 5.385 10 C 0.427 3.573 11 O -0.460 6.460 12 N -0.389 5.389 13 C 0.065 3.935 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.048 3.952 26 C -0.188 4.188 27 C 0.017 3.983 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.223 0.777 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.107 0.893 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.099 0.901 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.049 -7.204 -26.103 27.156 hybrid contribution -0.424 1.234 0.128 1.311 sum -2.473 -5.970 -25.975 26.767 Atomic orbital electron populations 1.23320 0.75975 1.03941 1.02689 1.86497 1.23658 1.33053 1.83852 1.23389 0.91421 0.81505 0.71996 1.90675 1.66807 1.36366 1.44812 1.21476 0.87536 0.99304 0.98725 1.21880 1.01927 1.01235 0.94280 1.22812 0.98653 0.93245 1.01144 1.22426 0.96991 0.92880 0.89845 1.47858 1.61118 1.24493 1.05040 1.15416 0.79219 0.83125 0.79546 1.90947 1.57234 1.38480 1.59330 1.45535 1.60458 1.22887 1.10060 1.20941 0.95720 1.00432 0.76421 1.22342 0.95797 0.99267 1.00374 1.20837 0.90708 0.97654 0.88651 1.44138 1.02479 1.37632 1.47317 1.19187 1.16984 0.98854 1.03321 0.91597 1.25065 1.01216 0.96896 0.96514 1.70038 1.29594 1.25816 1.29092 0.86285 0.78146 0.83414 0.78877 1.21480 1.21781 1.20452 1.20854 0.90158 0.95685 0.88506 1.22659 0.96432 0.99585 1.00097 1.21753 0.97079 0.89871 0.89616 0.87844 0.91658 0.91869 0.90705 0.91529 0.90370 0.88912 0.88701 0.89865 0.90559 0.77693 0.90015 0.91930 0.92650 0.92319 0.96153 0.93581 0.96068 0.89251 0.92794 0.92905 0.90051 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.40 10.44 -39.26 -0.41 -3.81 16 3 C 0.47 5.04 6.38 36.00 0.23 5.27 16 4 O -0.50 -6.64 15.19 -18.76 -0.28 -6.93 16 5 C -0.07 -0.56 0.91 -154.28 -0.14 -0.70 16 6 C -0.14 -0.69 8.17 37.16 0.30 -0.39 16 7 C -0.12 -0.92 5.95 -25.04 -0.15 -1.07 16 8 C 0.10 0.80 6.92 -2.32 -0.02 0.78 16 9 N -0.65 -7.75 3.29 -175.69 -0.58 -8.33 16 10 C 0.72 11.78 8.50 -86.92 -0.74 11.04 16 11 O -0.58 -12.07 16.34 5.29 0.09 -11.98 16 12 N -0.74 -10.99 5.05 -58.64 -0.30 -11.28 16 13 C 0.17 3.04 2.41 -67.89 -0.16 2.88 16 14 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 15 C 0.15 3.08 6.51 -3.71 -0.02 3.06 16 16 N -0.59 -14.99 2.99 -172.06 -0.51 -15.50 16 17 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 18 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 19 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -26.67 11.18 55.49 0.62 -26.05 16 21 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.17 4.35 5.33 -3.48 -0.02 4.33 16 26 C -0.15 -3.06 5.67 -26.38 -0.15 -3.21 16 27 C 0.14 1.46 6.26 -2.98 -0.02 1.45 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.48 7.86 -51.93 -0.41 0.07 16 35 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 36 H 0.08 0.60 6.83 -51.93 -0.35 0.24 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.39 4.63 6.94 -40.82 -0.28 4.35 16 39 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 2.49 6.04 -51.93 -0.31 2.17 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.08 0.71 7.68 -51.93 -0.40 0.31 16 50 H 0.08 1.05 7.54 -51.93 -0.39 0.66 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -35.34 396.35 -8.99 -44.33 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.36 Total: 1.59 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -0.20 Total: 15.12 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.77 Total: -61.16 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.61 Total: -22.72 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.34 -8.99 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610749392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.504 kcal (2) G-P(sol) polarization free energy of solvation -35.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds