Wall clock time and date at job start Sat Apr 11 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 116.99995 * 2 1 4 4 O 1.20825 * 119.99824 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00375 * 179.97438 * 3 2 1 6 6 C 1.52996 * 110.88731 * 303.88373 * 5 3 2 7 7 C 1.55155 * 111.00383 * 179.97438 * 5 3 2 8 8 C 1.54327 * 102.94103 * 206.42316 * 7 5 3 9 9 N 1.47029 * 107.27052 * 22.19570 * 8 7 5 10 10 C 1.34773 * 125.64824 * 181.01853 * 9 8 7 11 11 O 1.21583 * 120.00004 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00138 * 0.02717 * 10 9 8 13 13 C 1.46499 * 119.99985 * 179.97438 * 12 10 9 14 14 C 1.53046 * 109.45791 * 204.99746 * 13 12 10 15 15 C 1.53187 * 109.31183 * 178.61385 * 14 13 12 16 16 N 1.46927 * 108.77406 * 54.63732 * 15 14 13 17 17 C 1.36943 * 120.63120 * 126.36883 * 16 15 14 18 18 H 1.08000 * 119.99888 * 332.45081 * 17 16 15 19 19 C 1.38811 * 119.99955 * 152.45061 * 17 16 15 20 20 N 1.31614 * 120.00254 * 342.76805 * 19 17 16 21 21 Si 1.86801 * 119.99678 * 162.77313 * 19 17 16 22 22 H 1.48501 * 109.46686 * 269.99566 * 21 19 17 23 23 H 1.48499 * 109.47518 * 29.99570 * 21 19 17 24 24 H 1.48502 * 109.46873 * 149.99729 * 21 19 17 25 25 C 1.46923 * 118.73893 * 306.64252 * 16 15 14 26 26 C 1.52755 * 109.00900 * 53.31139 * 25 16 15 27 27 C 1.47422 * 108.70052 * 1.28467 * 9 8 7 28 28 H 1.09004 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47659 * 299.99684 * 1 2 3 30 30 H 1.08999 * 109.47395 * 60.00642 * 1 2 3 31 31 H 1.09004 * 109.47011 * 296.11784 * 6 5 3 32 32 H 1.09000 * 109.47496 * 56.11369 * 6 5 3 33 33 H 1.09002 * 109.47273 * 176.11924 * 6 5 3 34 34 H 1.08996 * 110.72041 * 88.06730 * 7 5 3 35 35 H 1.08998 * 110.72373 * 324.78903 * 7 5 3 36 36 H 1.08994 * 109.88497 * 262.77682 * 8 7 5 37 37 H 1.09006 * 110.00867 * 141.68089 * 8 7 5 38 38 H 0.97006 * 119.99849 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.46208 * 324.97375 * 13 12 10 40 40 H 1.09004 * 109.49497 * 58.66620 * 14 13 12 41 41 H 1.08995 * 109.52949 * 298.58526 * 14 13 12 42 42 H 1.09004 * 109.59162 * 294.84964 * 15 14 13 43 43 H 1.08995 * 109.70522 * 174.49161 * 15 14 13 44 44 H 0.96995 * 120.00322 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.58782 * 173.14413 * 25 16 15 46 46 H 1.09006 * 109.58879 * 293.56697 * 25 16 15 47 47 H 1.09007 * 109.56573 * 185.55521 * 26 25 16 48 48 H 1.08998 * 109.38819 * 65.51098 * 26 25 16 49 49 H 1.09004 * 110.36606 * 94.48457 * 27 9 8 50 50 H 1.08996 * 110.36553 * 216.80205 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.1522 0.5080 1.1876 7 6 4.0457 2.7506 -0.0002 8 6 5.4338 2.6626 -0.6688 9 7 5.4586 1.4248 -1.4619 10 6 6.5044 0.9750 -2.1833 11 8 6.4119 -0.0665 -2.8038 12 7 7.6528 1.6797 -2.2170 13 6 8.7897 1.1905 -3.0008 14 6 10.0889 1.7547 -2.4213 15 6 11.2777 1.2137 -3.2218 16 7 11.0686 1.5189 -4.6437 17 6 12.0271 2.1810 -5.3635 18 1 12.7056 2.8574 -4.8650 19 6 12.1266 1.9828 -6.7338 20 7 11.5543 0.9365 -7.2906 21 14 13.0729 3.2009 -7.7874 22 1 12.1527 4.2667 -8.2591 23 1 14.1633 3.8086 -6.9831 24 1 13.6549 2.4956 -8.9575 25 6 9.8089 1.1058 -5.2771 26 6 8.6389 1.6432 -4.4550 27 6 4.1480 0.7604 -1.3423 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 3.8336 0.9790 2.1176 32 1 3.8001 -0.5233 1.1635 33 1 5.2405 0.5218 1.1276 34 1 4.1317 3.1286 1.0185 35 1 3.3730 3.3744 -0.5887 36 1 6.2114 2.6297 0.0942 37 1 5.5894 3.5230 -1.3197 38 1 7.7265 2.5109 -1.7223 39 1 8.8168 0.1016 -2.9606 40 1 10.1841 1.4514 -1.3787 41 1 10.0734 2.8428 -2.4836 42 1 11.3486 0.1344 -3.0863 43 1 12.1978 1.6862 -2.8781 44 1 11.6241 0.7978 -8.2480 45 1 9.7589 1.5093 -6.2884 46 1 9.7575 0.0175 -5.3127 47 1 7.7020 1.2604 -4.8599 48 1 8.6361 2.7323 -4.4986 49 1 3.5014 1.0449 -2.1724 50 1 4.2729 -0.3219 -1.3113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610749393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:45 Heat of formation + Delta-G solvation = -88.121582 kcal Electronic energy + Delta-G solvation = -30386.469680 eV Core-core repulsion = 26221.571750 eV Total energy + Delta-G solvation = -4164.897930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38193 -40.13723 -38.42125 -37.19160 -36.72195 -34.39310 -33.31887 -31.91142 -30.13585 -30.00087 -29.41528 -28.13320 -27.19781 -25.10390 -23.99815 -22.99139 -22.19147 -21.79338 -20.15267 -19.86446 -19.35389 -18.19312 -17.71051 -17.03851 -16.86976 -16.68882 -15.96263 -15.67490 -14.91309 -14.76389 -14.48509 -14.22988 -14.17161 -13.84905 -13.54658 -13.48700 -13.29126 -13.08667 -12.96858 -12.88586 -12.67263 -12.47067 -12.32076 -12.28688 -11.99833 -11.49309 -11.45643 -11.27572 -11.22495 -11.10310 -10.90178 -10.78755 -10.72844 -10.36375 -10.20380 -10.09125 -9.97166 -9.73296 -9.53881 -8.91055 -8.56261 -8.35909 -6.66893 -5.76172 -3.19005 1.69390 2.14508 2.65551 3.32490 3.39453 3.46073 3.47451 3.69757 3.97789 4.14368 4.30025 4.47152 4.51178 4.66184 4.69353 4.76600 4.79413 5.10338 5.14326 5.25477 5.32185 5.32581 5.34384 5.41774 5.42119 5.48531 5.51954 5.58933 5.67225 5.74641 5.86049 5.91898 5.98021 6.11323 6.26192 6.39145 6.48655 6.62379 6.67971 6.80724 6.92779 6.97930 7.10369 7.27378 7.42414 7.71591 7.81805 8.06244 8.47177 8.72849 9.23195 9.86663 10.43173 11.32359 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.002080 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.697949 B =13458.172506 C =13647.183734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.481 3.519 4 O -0.501 6.501 5 C -0.072 4.072 6 C -0.134 4.134 7 C -0.110 4.110 8 C 0.100 3.900 9 N -0.640 5.640 10 C 0.722 3.278 11 O -0.582 6.582 12 N -0.735 5.735 13 C 0.168 3.832 14 C -0.138 4.138 15 C 0.149 3.851 16 N -0.593 5.593 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.173 3.827 26 C -0.147 4.147 27 C 0.146 3.854 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.390 0.610 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.254 0.746 45 H 0.089 0.911 46 H 0.020 0.980 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.069 0.931 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 1.477 19.558 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.268 6.268 3 C 0.322 3.678 4 O -0.388 6.388 5 C -0.074 4.074 6 C -0.191 4.191 7 C -0.147 4.147 8 C -0.023 4.023 9 N -0.380 5.380 10 C 0.424 3.576 11 O -0.459 6.459 12 N -0.389 5.389 13 C 0.065 3.935 14 C -0.178 4.178 15 C 0.022 3.978 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.205 1.205 24 H -0.218 1.218 25 C 0.047 3.953 26 C -0.187 4.187 27 C 0.022 3.978 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.223 0.777 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.087 0.913 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.795 0.891 18.841 27.342 hybrid contribution 0.105 1.192 -0.355 1.248 sum -19.689 2.083 18.486 27.087 Atomic orbital electron populations 1.23323 0.75996 1.03998 1.02639 1.86526 1.23613 1.33020 1.83685 1.23221 0.91037 0.81486 0.72011 1.90676 1.66829 1.36373 1.44926 1.21752 0.87269 0.99206 0.99125 1.21755 1.02174 1.00369 0.94844 1.22687 0.95745 0.93435 1.02873 1.22017 0.97612 0.87817 0.94863 1.47480 1.12930 1.25152 1.52465 1.15460 0.79424 0.83390 0.79318 1.90950 1.82262 1.24380 1.48333 1.45530 1.12842 1.26610 1.53880 1.20938 0.82687 0.99218 0.90678 1.22341 0.95759 1.00993 0.98714 1.20833 0.94323 0.96831 0.85841 1.44100 1.15442 1.66939 1.05059 1.19179 1.11283 1.17702 0.90169 0.91626 1.25057 0.99646 0.96833 0.98161 1.70037 1.47779 1.25984 1.10670 0.86290 0.79490 0.80824 0.80145 1.21492 1.20456 1.21787 1.20676 0.81740 0.96326 0.96567 1.22508 1.00621 1.00648 0.94921 1.21909 0.83451 0.99090 0.93347 0.87824 0.91826 0.91706 0.91627 0.90719 0.90465 0.88973 0.88872 0.91103 0.90916 0.77671 0.90000 0.92663 0.91927 0.96152 0.92334 0.93586 0.89288 0.96139 0.92794 0.92841 0.91322 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.98 10.38 -39.26 -0.41 -3.38 16 3 C 0.48 4.46 6.67 36.00 0.24 4.70 16 4 O -0.50 -5.71 15.46 -18.75 -0.29 -6.00 16 5 C -0.07 -0.58 0.90 -153.40 -0.14 -0.71 16 6 C -0.13 -0.89 8.52 37.16 0.32 -0.57 16 7 C -0.11 -0.77 5.58 -24.90 -0.14 -0.91 16 8 C 0.10 0.78 5.83 -3.06 -0.02 0.77 16 9 N -0.64 -7.36 3.31 -176.09 -0.58 -7.94 16 10 C 0.72 11.25 8.45 -86.92 -0.73 10.51 16 11 O -0.58 -11.65 16.26 5.29 0.09 -11.56 16 12 N -0.74 -10.59 5.04 -58.63 -0.30 -10.88 16 13 C 0.17 2.96 2.42 -67.88 -0.16 2.80 16 14 C -0.14 -2.28 5.55 -26.61 -0.15 -2.42 16 15 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 16 N -0.59 -14.82 3.00 -172.58 -0.52 -15.34 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 20 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 21 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.17 4.26 5.28 -3.94 -0.02 4.24 16 26 C -0.15 -2.98 5.64 -26.83 -0.15 -3.13 16 27 C 0.15 1.52 5.83 -2.41 -0.01 1.50 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 8.04 -51.93 -0.42 0.08 16 33 H 0.08 0.54 7.91 -51.93 -0.41 0.13 16 34 H 0.09 0.49 8.05 -51.93 -0.42 0.08 16 35 H 0.09 0.74 7.39 -51.93 -0.38 0.36 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.39 4.47 7.59 -40.82 -0.31 4.16 16 39 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 48 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 50 H 0.09 1.04 7.95 -51.93 -0.41 0.63 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -34.20 398.17 -9.08 -43.29 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.51 Total: 1.00 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: -0.16 Total: 13.96 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.78 Total: -60.01 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.61 Total: -20.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.20 -9.08 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610749393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.835 kcal (2) G-P(sol) polarization free energy of solvation -34.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds