Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34231 * 116.99995 * 2 1 4 4 O 1.20825 * 119.99824 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00375 * 179.97438 * 3 2 1 6 6 C 1.52996 * 110.88731 * 303.88373 * 5 3 2 7 7 C 1.55155 * 111.00383 * 179.97438 * 5 3 2 8 8 C 1.54327 * 102.94103 * 206.42316 * 7 5 3 9 9 N 1.47029 * 107.27052 * 22.19570 * 8 7 5 10 10 C 1.34773 * 125.64824 * 181.01853 * 9 8 7 11 11 O 1.21583 * 120.00004 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00138 * 0.02717 * 10 9 8 13 13 C 1.46499 * 119.99985 * 179.97438 * 12 10 9 14 14 C 1.53046 * 109.45791 * 204.99746 * 13 12 10 15 15 C 1.53187 * 109.31183 * 178.61385 * 14 13 12 16 16 N 1.46927 * 108.77406 * 54.63732 * 15 14 13 17 17 C 1.36943 * 120.63120 * 126.36883 * 16 15 14 18 18 H 1.08000 * 119.99888 * 332.45081 * 17 16 15 19 19 C 1.38811 * 119.99955 * 152.45061 * 17 16 15 20 20 N 1.31614 * 120.00254 * 342.76805 * 19 17 16 21 21 Si 1.86801 * 119.99678 * 162.77313 * 19 17 16 22 22 H 1.48501 * 109.46686 * 269.99566 * 21 19 17 23 23 H 1.48499 * 109.47518 * 29.99570 * 21 19 17 24 24 H 1.48502 * 109.46873 * 149.99729 * 21 19 17 25 25 C 1.46923 * 118.73893 * 306.64252 * 16 15 14 26 26 C 1.52755 * 109.00900 * 53.31139 * 25 16 15 27 27 C 1.47422 * 108.70052 * 1.28467 * 9 8 7 28 28 H 1.09004 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47659 * 299.99684 * 1 2 3 30 30 H 1.08999 * 109.47395 * 60.00642 * 1 2 3 31 31 H 1.09004 * 109.47011 * 296.11784 * 6 5 3 32 32 H 1.09000 * 109.47496 * 56.11369 * 6 5 3 33 33 H 1.09002 * 109.47273 * 176.11924 * 6 5 3 34 34 H 1.08996 * 110.72041 * 88.06730 * 7 5 3 35 35 H 1.08998 * 110.72373 * 324.78903 * 7 5 3 36 36 H 1.08994 * 109.88497 * 262.77682 * 8 7 5 37 37 H 1.09006 * 110.00867 * 141.68089 * 8 7 5 38 38 H 0.97006 * 119.99849 * 359.97438 * 12 10 9 39 39 H 1.08996 * 109.46208 * 324.97375 * 13 12 10 40 40 H 1.09004 * 109.49497 * 58.66620 * 14 13 12 41 41 H 1.08995 * 109.52949 * 298.58526 * 14 13 12 42 42 H 1.09004 * 109.59162 * 294.84964 * 15 14 13 43 43 H 1.08995 * 109.70522 * 174.49161 * 15 14 13 44 44 H 0.96995 * 120.00322 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.58782 * 173.14413 * 25 16 15 46 46 H 1.09006 * 109.58879 * 293.56697 * 25 16 15 47 47 H 1.09007 * 109.56573 * 185.55521 * 26 25 16 48 48 H 1.08998 * 109.38819 * 65.51098 * 26 25 16 49 49 H 1.09004 * 110.36606 * 94.48457 * 27 9 8 50 50 H 1.08996 * 110.36553 * 216.80205 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.1522 0.5080 1.1876 7 6 4.0457 2.7506 -0.0002 8 6 5.4338 2.6626 -0.6688 9 7 5.4586 1.4248 -1.4619 10 6 6.5044 0.9750 -2.1833 11 8 6.4119 -0.0665 -2.8038 12 7 7.6528 1.6797 -2.2170 13 6 8.7897 1.1905 -3.0008 14 6 10.0889 1.7547 -2.4213 15 6 11.2777 1.2137 -3.2218 16 7 11.0686 1.5189 -4.6437 17 6 12.0271 2.1810 -5.3635 18 1 12.7056 2.8574 -4.8650 19 6 12.1266 1.9828 -6.7338 20 7 11.5543 0.9365 -7.2906 21 14 13.0729 3.2009 -7.7874 22 1 12.1527 4.2667 -8.2591 23 1 14.1633 3.8086 -6.9831 24 1 13.6549 2.4956 -8.9575 25 6 9.8089 1.1058 -5.2771 26 6 8.6389 1.6432 -4.4550 27 6 4.1480 0.7604 -1.3423 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 3.8336 0.9790 2.1176 32 1 3.8001 -0.5233 1.1635 33 1 5.2405 0.5218 1.1276 34 1 4.1317 3.1286 1.0185 35 1 3.3730 3.3744 -0.5887 36 1 6.2114 2.6297 0.0942 37 1 5.5894 3.5230 -1.3197 38 1 7.7265 2.5109 -1.7223 39 1 8.8168 0.1016 -2.9606 40 1 10.1841 1.4514 -1.3787 41 1 10.0734 2.8428 -2.4836 42 1 11.3486 0.1344 -3.0863 43 1 12.1978 1.6862 -2.8781 44 1 11.6241 0.7978 -8.2480 45 1 9.7589 1.5093 -6.2884 46 1 9.7575 0.0175 -5.3127 47 1 7.7020 1.2604 -4.8599 48 1 8.6361 2.7323 -4.4986 49 1 3.5014 1.0449 -2.1724 50 1 4.2729 -0.3219 -1.3113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610749393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -110.236415 kcal Electronic energy + Delta-G solvation = -30387.428651 eV Core-core repulsion = 26221.571750 eV Total energy + Delta-G solvation = -4165.856901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.14231 -41.19769 -39.56606 -38.54973 -37.51250 -35.99529 -34.41417 -33.52606 -31.73741 -31.11206 -30.78005 -28.64316 -28.05117 -26.77302 -25.05942 -23.89334 -23.68179 -23.39098 -21.21394 -20.85505 -20.75283 -19.30409 -18.64238 -18.41605 -17.76484 -17.54741 -17.22314 -16.76977 -16.61371 -15.88701 -15.60430 -15.35991 -15.33790 -15.01954 -14.92433 -14.74951 -14.43681 -14.24669 -14.12677 -13.91957 -13.70250 -13.52398 -13.17686 -13.08177 -13.01103 -12.94191 -12.68033 -12.60354 -12.58678 -12.11369 -12.08733 -12.01660 -11.88199 -11.84231 -11.82913 -11.54293 -11.51948 -11.41655 -11.18950 -10.57415 -10.14640 -9.56136 -8.70709 -7.85975 -5.31944 0.95341 1.39627 1.48415 1.49949 1.58822 1.75622 2.12043 2.52656 2.92892 3.16149 3.30230 3.33275 3.68230 3.68894 3.85706 3.89759 4.03965 4.10779 4.18763 4.27714 4.32030 4.36330 4.49381 4.51904 4.54447 4.65704 4.69483 4.69819 4.77014 4.81988 4.82402 4.86366 4.94161 5.02422 5.05060 5.09933 5.13656 5.20648 5.24423 5.30465 5.34132 5.47642 5.60144 5.65600 5.71051 6.00507 6.39790 6.58627 6.96908 7.14540 7.55055 7.85905 8.38482 9.21178 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.002080 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.697949 B =13458.172506 C =13647.183734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.482 3.518 4 O -0.525 6.525 5 C -0.063 4.063 6 C -0.130 4.130 7 C -0.103 4.103 8 C 0.095 3.905 9 N -0.634 5.634 10 C 0.718 3.282 11 O -0.634 6.634 12 N -0.720 5.720 13 C 0.181 3.819 14 C -0.119 4.119 15 C 0.141 3.859 16 N -0.609 5.609 17 C -0.258 4.258 18 H 0.075 0.925 19 C -0.057 4.057 20 N -0.939 5.939 21 Si 0.969 3.031 22 H -0.287 1.287 23 H -0.263 1.263 24 H -0.299 1.299 25 C 0.183 3.817 26 C -0.130 4.130 27 C 0.142 3.858 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.410 0.590 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.012 0.988 43 H 0.070 0.930 44 H 0.248 0.752 45 H 0.054 0.946 46 H -0.012 1.012 47 H 0.041 0.959 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.812 3.493 22.517 30.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.325 3.675 4 O -0.413 6.413 5 C -0.065 4.065 6 C -0.187 4.187 7 C -0.140 4.140 8 C -0.026 4.026 9 N -0.372 5.372 10 C 0.420 3.580 11 O -0.515 6.515 12 N -0.375 5.375 13 C 0.076 3.924 14 C -0.159 4.159 15 C 0.015 3.985 16 N -0.333 5.333 17 C -0.389 4.389 18 H 0.093 0.907 19 C -0.252 4.252 20 N -0.585 5.585 21 Si 0.798 3.202 22 H -0.214 1.214 23 H -0.188 1.188 24 H -0.226 1.226 25 C 0.056 3.944 26 C -0.171 4.171 27 C 0.018 3.982 28 H 0.147 0.853 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.247 0.753 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.030 0.970 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.006 0.994 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.999 2.959 21.887 29.795 hybrid contribution 0.073 0.495 -1.232 1.330 sum -19.926 3.454 20.655 28.907 Atomic orbital electron populations 1.23585 0.74571 1.05792 1.02694 1.86524 1.25114 1.32647 1.83276 1.23411 0.91434 0.81345 0.71285 1.90666 1.67417 1.37085 1.46161 1.21727 0.86523 1.00125 0.98159 1.21754 1.01979 1.00202 0.94795 1.22701 0.94813 0.92395 1.04108 1.22321 0.98963 0.86148 0.95212 1.47403 1.12018 1.26242 1.51564 1.15591 0.80205 0.82859 0.79318 1.90921 1.83268 1.26752 1.50568 1.45084 1.11711 1.27219 1.53455 1.20533 0.84620 0.97870 0.89380 1.22130 0.92634 1.01407 0.99724 1.21054 0.96857 0.96753 0.83800 1.44348 1.15122 1.67007 1.06816 1.19582 1.11186 1.17446 0.90639 0.90699 1.25880 1.01273 0.98468 0.99570 1.70212 1.49889 1.28010 1.10407 0.85232 0.78459 0.78403 0.78152 1.21361 1.18780 1.22575 1.20368 0.83817 0.94270 0.95926 1.22248 0.97857 1.00548 0.96407 1.21940 0.82997 0.98514 0.94747 0.85263 0.91348 0.92100 0.89812 0.91004 0.90457 0.86391 0.89812 0.88524 0.89960 0.75343 0.92535 0.88842 0.90572 0.96975 0.91201 0.94247 0.92770 0.99370 0.94022 0.92149 0.92189 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.72 10.38 -51.42 -0.53 -6.26 16 3 C 0.48 8.38 6.67 71.23 0.48 8.86 16 4 O -0.52 -11.38 15.46 21.97 0.34 -11.04 16 5 C -0.06 -0.91 0.90 -51.46 -0.05 -0.95 16 6 C -0.13 -1.40 8.52 71.98 0.61 -0.79 16 7 C -0.10 -1.15 5.58 31.78 0.18 -0.97 16 8 C 0.10 1.18 5.83 86.73 0.51 1.68 16 9 N -0.63 -13.59 3.31 -829.30 -2.75 -16.33 16 10 C 0.72 21.72 8.45 179.05 1.51 23.23 16 11 O -0.63 -25.88 16.26 -3.98 -0.06 -25.94 16 12 N -0.72 -19.17 5.04 -457.68 -2.31 -21.48 16 13 C 0.18 6.18 2.42 45.02 0.11 6.29 16 14 C -0.12 -3.58 5.55 30.67 0.17 -3.41 16 15 C 0.14 5.60 6.52 86.36 0.56 6.17 16 16 N -0.61 -30.68 3.00 -699.93 -2.10 -32.78 16 17 C -0.26 -14.10 9.58 84.03 0.81 -13.30 16 18 H 0.08 3.88 7.89 -2.91 -0.02 3.86 16 19 C -0.06 -3.22 4.91 84.86 0.42 -2.80 16 20 N -0.94 -57.25 11.19 21.65 0.24 -57.00 16 21 Si 0.97 45.14 29.59 68.60 2.03 47.17 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 25 C 0.18 9.36 5.28 86.22 0.46 9.82 16 26 C -0.13 -5.34 5.64 30.53 0.17 -5.17 16 27 C 0.14 2.87 5.83 86.93 0.51 3.38 16 28 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.83 8.04 -2.39 -0.02 0.81 16 33 H 0.08 0.86 7.91 -2.39 -0.02 0.84 16 34 H 0.12 0.77 8.05 -2.39 -0.02 0.75 16 35 H 0.08 1.15 7.39 -2.39 -0.02 1.13 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.41 7.81 7.59 -92.70 -0.70 7.10 16 39 H 0.06 2.26 7.58 -2.39 -0.02 2.25 16 40 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 44 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 45 H 0.05 3.13 6.04 -2.38 -0.01 3.12 16 46 H -0.01 -0.67 8.14 -2.38 -0.02 -0.68 16 47 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 48 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.06 1.31 8.03 -2.38 -0.02 1.29 16 50 H 0.08 1.84 7.95 -2.39 -0.02 1.82 16 Total: -1.00 -77.65 398.17 2.72 -74.93 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.23 Total: 15.22 kcal Atomic # 6 Polarization: 25.87 SS G_CDS: 7.63 Total: 33.51 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -6.91 Total: -127.59 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.26 Total: -43.24 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -77.65 2.72 -74.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610749393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.304 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds