Wall clock time and date at job start Sat Apr 11 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00176 * 2 1 4 4 H 1.48504 * 109.47610 * 270.00540 * 3 2 1 5 5 H 1.48505 * 109.47025 * 30.00260 * 3 2 1 6 6 H 1.48498 * 109.47428 * 150.00265 * 3 2 1 7 7 C 1.37881 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00251 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99807 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00200 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00085 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47089 * 179.97438 * 13 11 10 15 15 C 1.46846 * 110.99717 * 66.04674 * 14 13 11 16 16 C 1.53036 * 109.52384 * 174.15896 * 15 14 13 17 17 C 1.53123 * 109.27788 * 59.18000 * 16 15 14 18 18 C 1.53124 * 109.15980 * 302.34618 * 17 16 15 19 19 C 1.46842 * 111.00077 * 301.83973 * 14 13 11 20 20 H 1.08994 * 109.46873 * 65.82005 * 19 14 13 21 21 C 1.53006 * 109.46201 * 305.83996 * 19 14 13 22 22 O 1.45192 * 109.47192 * 294.99964 * 21 19 14 23 23 C 1.34642 * 117.00133 * 179.97438 * 22 21 19 24 24 O 1.21511 * 119.99883 * 0.02562 * 23 22 21 25 25 N 1.34768 * 120.00367 * 180.02562 * 23 22 21 26 26 C 1.46501 * 120.00274 * 180.02562 * 25 23 22 27 27 C 1.53000 * 117.50108 * 223.62181 * 26 25 23 28 28 C 1.53003 * 117.49824 * 154.99623 * 26 25 23 29 29 H 0.96996 * 120.00032 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46735 * 59.99355 * 9 7 2 31 31 H 1.09003 * 109.46779 * 299.99857 * 9 7 2 32 32 H 0.97003 * 119.99920 * 0.02562 * 10 9 7 33 33 H 1.09007 * 109.47237 * 60.00754 * 13 11 10 34 34 H 1.08994 * 109.47433 * 300.00053 * 13 11 10 35 35 H 1.08999 * 109.46089 * 54.14588 * 15 14 13 36 36 H 1.08994 * 109.45639 * 294.17306 * 15 14 13 37 37 H 1.09000 * 109.50632 * 179.12292 * 16 15 14 38 38 H 1.09006 * 109.50216 * 299.24086 * 16 15 14 39 39 H 1.09000 * 109.52181 * 62.25097 * 17 16 15 40 40 H 1.08997 * 109.52376 * 182.44203 * 17 16 15 41 41 H 1.08997 * 109.50272 * 297.71554 * 18 17 16 42 42 H 1.08999 * 109.50255 * 177.59425 * 18 17 16 43 43 H 1.09003 * 109.46856 * 55.00340 * 21 19 14 44 44 H 1.09002 * 109.46947 * 175.00226 * 21 19 14 45 45 H 0.97005 * 120.00018 * 359.97438 * 25 23 22 46 46 H 1.08994 * 115.54626 * 9.32961 * 26 25 23 47 47 H 1.08999 * 117.49860 * 359.97438 * 27 26 25 48 48 H 1.08990 * 117.50254 * 145.01915 * 27 26 25 49 49 H 1.08997 * 117.49826 * 214.97979 * 28 26 25 50 50 H 1.08998 * 117.50204 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0020 12 8 6.1131 -1.8997 -0.0025 13 6 5.8273 -4.2423 -0.0024 14 7 7.2963 -4.2423 -0.0041 15 6 7.8239 -3.6856 1.2481 16 6 9.3468 -3.8347 1.2725 17 6 9.9462 -3.0973 0.0718 18 6 9.3441 -3.6633 -1.2173 19 6 7.8212 -3.5192 -1.1694 20 1 7.5586 -2.4643 -1.0909 21 6 7.2139 -4.1021 -2.4471 22 8 7.6601 -5.4737 -2.6131 23 6 7.2121 -6.1354 -3.6968 24 8 6.4689 -5.5815 -4.4825 25 7 7.5879 -7.4119 -3.9100 26 6 7.1009 -8.1316 -5.0895 27 6 6.6305 -9.5742 -4.8925 28 6 7.9518 -9.2915 -5.6105 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6803 0.8888 31 1 3.8745 -0.6800 -0.8912 32 1 3.3696 -3.3126 -0.0010 33 1 5.4634 -4.7561 -0.8923 34 1 5.4646 -4.7562 0.8877 35 1 7.3931 -4.2216 2.0938 36 1 7.5612 -2.6300 1.3152 37 1 9.7397 -3.4074 2.1951 38 1 9.6100 -4.8911 1.2191 39 1 9.7162 -2.0344 0.1452 40 1 11.0271 -3.2371 0.0609 41 1 9.6072 -4.7170 -1.3098 42 1 9.7349 -3.1135 -2.0735 43 1 6.1264 -4.0798 -2.3754 44 1 7.5337 -3.5097 -3.3044 45 1 8.1815 -7.8540 -3.2830 46 1 6.5720 -7.5254 -5.8248 47 1 6.6839 -9.9879 -3.8855 48 1 5.7919 -9.9172 -5.4982 49 1 7.9823 -9.4487 -6.6887 50 1 8.8737 -9.5194 -5.0756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810040259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:58 Heat of formation + Delta-G solvation = -84.657384 kcal Electronic energy + Delta-G solvation = -30552.681255 eV Core-core repulsion = 26387.933544 eV Total energy + Delta-G solvation = -4164.747711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.76422 -40.05121 -38.22911 -37.68495 -36.07706 -34.42937 -33.49091 -33.18745 -32.40286 -31.70913 -28.80482 -27.13296 -26.27881 -23.32680 -23.26048 -22.80798 -22.07548 -21.40525 -21.14036 -20.05786 -19.66434 -18.85956 -17.40454 -17.10528 -16.70591 -16.15572 -16.00432 -15.63190 -15.44415 -15.08427 -14.86441 -14.72783 -14.39045 -14.27402 -13.67794 -13.54672 -13.26581 -13.15722 -12.94280 -12.91742 -12.49894 -12.36867 -12.19199 -12.01241 -11.82016 -11.76606 -11.64687 -11.08144 -10.97864 -10.92646 -10.82536 -10.74720 -10.66545 -10.57760 -10.37529 -10.12685 -10.04374 -9.92977 -9.52506 -9.15624 -8.81095 -8.22373 -7.92431 -6.24243 -4.26846 1.96427 2.64420 3.04974 3.23896 3.30584 3.37711 3.52859 3.83178 3.93996 3.98159 4.30190 4.34211 4.52432 4.58398 4.69000 4.72889 4.91906 5.08923 5.11128 5.19204 5.20584 5.24928 5.30628 5.35228 5.41478 5.46513 5.51838 5.58685 5.65070 5.67171 5.75643 5.83315 5.87924 6.00088 6.03492 6.11197 6.13808 6.22409 6.34567 6.45472 6.72829 6.99945 7.01226 7.09200 7.15947 7.17840 7.34583 8.06512 8.22065 8.44779 8.69676 8.82951 9.35369 10.87741 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.002976 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.706614 B = 9405.678782 C =11373.291608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.700 5.700 11 C 0.467 3.533 12 O -0.558 6.558 13 C 0.025 3.975 14 N -0.502 5.502 15 C 0.041 3.959 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.105 4.105 19 C 0.064 3.936 20 H 0.111 0.889 21 C 0.093 3.907 22 O -0.350 6.350 23 C 0.647 3.353 24 O -0.572 6.572 25 N -0.684 5.684 26 C 0.097 3.903 27 C -0.193 4.193 28 C -0.189 4.189 29 H 0.268 0.732 30 H 0.025 0.975 31 H 0.020 0.980 32 H 0.397 0.603 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.407 0.593 46 H 0.142 0.858 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.105 0.895 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.202 -17.785 -4.754 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.097 3.903 10 N -0.348 5.348 11 C 0.252 3.748 12 O -0.440 6.440 13 C -0.107 4.107 14 N -0.225 5.225 15 C -0.087 4.087 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.143 4.143 19 C -0.044 4.044 20 H 0.128 0.872 21 C 0.018 3.982 22 O -0.263 6.263 23 C 0.400 3.600 24 O -0.460 6.460 25 N -0.342 5.342 26 C -0.009 4.009 27 C -0.231 4.231 28 C -0.227 4.227 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.231 0.769 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.242 0.758 46 H 0.159 0.841 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.361 -17.090 -5.110 27.069 hybrid contribution -0.264 1.143 0.284 1.207 sum 20.097 -15.947 -4.826 26.106 Atomic orbital electron populations 1.69879 1.06208 1.27452 1.49296 1.24804 0.94794 0.99169 0.93850 0.86811 0.80492 0.83277 0.79038 1.19841 1.20868 1.18630 1.21090 0.88501 0.95249 1.53423 0.90235 1.19495 0.95350 0.78771 0.96668 1.46368 1.06037 1.11176 1.71251 1.21898 0.83424 0.92245 0.77252 1.90520 1.54814 1.46766 1.51880 1.22398 0.89547 0.93744 1.04963 1.62405 1.04194 1.53260 1.02628 1.22268 0.95015 1.00362 0.91015 1.21532 0.94766 1.00838 0.97806 1.21567 0.99324 1.00058 0.94862 1.21515 0.93343 1.02047 0.97426 1.22281 0.95359 0.99051 0.87709 0.87194 1.23268 0.99814 0.76932 0.98144 1.86331 1.68759 1.28858 1.42323 1.18166 0.79006 0.82154 0.80627 1.91019 1.39228 1.68011 1.47783 1.43912 1.52515 1.10622 1.27123 1.21528 1.02005 0.87857 0.89474 1.23493 0.98312 0.98772 1.02549 1.23438 0.95608 1.02156 1.01491 0.92225 0.95758 0.96211 0.76886 0.88059 0.87817 0.91263 0.91764 0.91862 0.91531 0.91961 0.92133 0.90738 0.91897 0.90928 0.90744 0.75750 0.84085 0.88221 0.87686 0.87625 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 10 N -0.70 -13.81 5.55 -61.47 -0.34 -14.15 16 11 C 0.47 8.34 7.13 -10.99 -0.08 8.26 16 12 O -0.56 -11.42 11.62 5.56 0.06 -11.35 16 13 C 0.03 0.34 5.30 -4.98 -0.03 0.32 16 14 N -0.50 -6.59 4.65 -228.13 -1.06 -7.65 16 15 C 0.04 0.53 5.09 -3.83 -0.02 0.51 16 16 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 17 C -0.12 -1.28 6.00 -26.60 -0.16 -1.44 16 18 C -0.11 -1.19 5.19 -26.65 -0.14 -1.33 16 19 C 0.06 0.86 1.75 -67.72 -0.12 0.74 16 20 H 0.11 1.80 5.36 -51.93 -0.28 1.52 16 21 C 0.09 1.27 4.71 37.16 0.17 1.45 16 22 O -0.35 -4.44 9.33 -40.33 -0.38 -4.82 16 23 C 0.65 8.47 8.75 54.05 0.47 8.95 16 24 O -0.57 -9.49 15.70 -19.28 -0.30 -9.80 16 25 N -0.68 -6.38 5.57 -58.73 -0.33 -6.71 16 26 C 0.10 0.79 6.43 -67.93 -0.44 0.35 16 27 C -0.19 -1.16 10.46 -26.73 -0.28 -1.44 16 28 C -0.19 -1.02 10.46 -26.73 -0.28 -1.30 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 32 H 0.40 6.99 8.32 -40.82 -0.34 6.65 16 33 H 0.10 1.32 6.21 -51.93 -0.32 1.00 16 34 H 0.10 1.22 8.06 -51.93 -0.42 0.80 16 35 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.06 1.01 6.00 -51.93 -0.31 0.70 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.09 5.98 -51.93 -0.31 0.78 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.41 2.83 8.94 -40.82 -0.36 2.47 16 46 H 0.14 1.36 7.40 -51.93 -0.38 0.97 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -33.14 395.96 -9.89 -43.04 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.11 Total: 8.56 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.51 Total: 5.86 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.95 Total: -54.27 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.61 Total: -25.97 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.14 -9.89 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810040259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.621 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds