Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00176 * 2 1 4 4 H 1.48504 * 109.47610 * 270.00540 * 3 2 1 5 5 H 1.48505 * 109.47025 * 30.00260 * 3 2 1 6 6 H 1.48498 * 109.47428 * 150.00265 * 3 2 1 7 7 C 1.37881 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00251 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99807 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47141 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00200 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99778 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00085 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47089 * 179.97438 * 13 11 10 15 15 C 1.46846 * 110.99717 * 66.04674 * 14 13 11 16 16 C 1.53036 * 109.52384 * 174.15896 * 15 14 13 17 17 C 1.53123 * 109.27788 * 59.18000 * 16 15 14 18 18 C 1.53124 * 109.15980 * 302.34618 * 17 16 15 19 19 C 1.46842 * 111.00077 * 301.83973 * 14 13 11 20 20 H 1.08994 * 109.46873 * 65.82005 * 19 14 13 21 21 C 1.53006 * 109.46201 * 305.83996 * 19 14 13 22 22 O 1.45192 * 109.47192 * 294.99964 * 21 19 14 23 23 C 1.34642 * 117.00133 * 179.97438 * 22 21 19 24 24 O 1.21511 * 119.99883 * 0.02562 * 23 22 21 25 25 N 1.34768 * 120.00367 * 180.02562 * 23 22 21 26 26 C 1.46501 * 120.00274 * 180.02562 * 25 23 22 27 27 C 1.53000 * 117.50108 * 223.62181 * 26 25 23 28 28 C 1.53003 * 117.49824 * 154.99623 * 26 25 23 29 29 H 0.96996 * 120.00032 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46735 * 59.99355 * 9 7 2 31 31 H 1.09003 * 109.46779 * 299.99857 * 9 7 2 32 32 H 0.97003 * 119.99920 * 0.02562 * 10 9 7 33 33 H 1.09007 * 109.47237 * 60.00754 * 13 11 10 34 34 H 1.08994 * 109.47433 * 300.00053 * 13 11 10 35 35 H 1.08999 * 109.46089 * 54.14588 * 15 14 13 36 36 H 1.08994 * 109.45639 * 294.17306 * 15 14 13 37 37 H 1.09000 * 109.50632 * 179.12292 * 16 15 14 38 38 H 1.09006 * 109.50216 * 299.24086 * 16 15 14 39 39 H 1.09000 * 109.52181 * 62.25097 * 17 16 15 40 40 H 1.08997 * 109.52376 * 182.44203 * 17 16 15 41 41 H 1.08997 * 109.50272 * 297.71554 * 18 17 16 42 42 H 1.08999 * 109.50255 * 177.59425 * 18 17 16 43 43 H 1.09003 * 109.46856 * 55.00340 * 21 19 14 44 44 H 1.09002 * 109.46947 * 175.00226 * 21 19 14 45 45 H 0.97005 * 120.00018 * 359.97438 * 25 23 22 46 46 H 1.08994 * 115.54626 * 9.32961 * 26 25 23 47 47 H 1.08999 * 117.49860 * 359.97438 * 27 26 25 48 48 H 1.08990 * 117.50254 * 145.01915 * 27 26 25 49 49 H 1.08997 * 117.49826 * 214.97979 * 28 26 25 50 50 H 1.08998 * 117.50204 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0020 12 8 6.1131 -1.8997 -0.0025 13 6 5.8273 -4.2423 -0.0024 14 7 7.2963 -4.2423 -0.0041 15 6 7.8239 -3.6856 1.2481 16 6 9.3468 -3.8347 1.2725 17 6 9.9462 -3.0973 0.0718 18 6 9.3441 -3.6633 -1.2173 19 6 7.8212 -3.5192 -1.1694 20 1 7.5586 -2.4643 -1.0909 21 6 7.2139 -4.1021 -2.4471 22 8 7.6601 -5.4737 -2.6131 23 6 7.2121 -6.1354 -3.6968 24 8 6.4689 -5.5815 -4.4825 25 7 7.5879 -7.4119 -3.9100 26 6 7.1009 -8.1316 -5.0895 27 6 6.6305 -9.5742 -4.8925 28 6 7.9518 -9.2915 -5.6105 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6803 0.8888 31 1 3.8745 -0.6800 -0.8912 32 1 3.3696 -3.3126 -0.0010 33 1 5.4634 -4.7561 -0.8923 34 1 5.4646 -4.7562 0.8877 35 1 7.3931 -4.2216 2.0938 36 1 7.5612 -2.6300 1.3152 37 1 9.7397 -3.4074 2.1951 38 1 9.6100 -4.8911 1.2191 39 1 9.7162 -2.0344 0.1452 40 1 11.0271 -3.2371 0.0609 41 1 9.6072 -4.7170 -1.3098 42 1 9.7349 -3.1135 -2.0735 43 1 6.1264 -4.0798 -2.3754 44 1 7.5337 -3.5097 -3.3044 45 1 8.1815 -7.8540 -3.2830 46 1 6.5720 -7.5254 -5.8248 47 1 6.6839 -9.9879 -3.8855 48 1 5.7919 -9.9172 -5.4982 49 1 7.9823 -9.4487 -6.6887 50 1 8.8737 -9.5194 -5.0756 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810040259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -110.235618 kcal Electronic energy + Delta-G solvation = -30553.790410 eV Core-core repulsion = 26387.933544 eV Total energy + Delta-G solvation = -4165.856866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.87374 -41.21846 -39.33960 -38.55358 -37.10436 -36.19357 -34.57573 -34.40874 -34.03516 -32.68734 -30.52987 -28.38715 -27.47665 -24.59071 -24.16621 -23.61802 -23.24775 -22.45094 -22.04843 -21.53542 -20.75483 -19.81858 -19.15696 -18.16645 -17.81225 -17.60877 -17.31891 -16.70329 -16.64039 -16.39968 -16.03227 -15.86406 -15.64153 -15.27067 -15.09658 -14.81116 -14.60518 -14.31164 -14.22653 -13.97790 -13.76232 -13.68304 -13.45509 -13.06038 -12.84021 -12.76473 -12.69432 -12.58017 -12.36247 -12.01428 -11.94635 -11.87123 -11.75851 -11.70682 -11.53008 -11.45554 -11.38603 -11.29738 -11.11337 -10.95443 -9.94753 -9.86520 -9.16364 -8.43576 -6.50863 1.04942 1.28780 1.30784 1.42686 1.60951 1.65776 2.23840 2.44048 2.76633 2.91556 2.98513 3.09830 3.66013 3.71623 3.78044 3.87908 3.97142 4.05560 4.07511 4.13505 4.20793 4.26417 4.38317 4.43766 4.50693 4.64205 4.69563 4.72971 4.80137 4.81262 4.88094 4.94580 4.98093 5.04462 5.09299 5.10881 5.21837 5.23906 5.25688 5.28575 5.33703 5.43341 5.46965 5.57056 5.89800 6.01990 6.05669 6.34331 6.50272 6.77585 7.11174 7.27568 7.33303 8.71288 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.002976 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.706614 B = 9405.678782 C =11373.291608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.234 3.766 10 N -0.705 5.705 11 C 0.468 3.532 12 O -0.582 6.582 13 C 0.035 3.965 14 N -0.492 5.492 15 C 0.039 3.961 16 C -0.106 4.106 17 C -0.119 4.119 18 C -0.100 4.100 19 C 0.067 3.933 20 H 0.081 0.919 21 C 0.098 3.902 22 O -0.341 6.341 23 C 0.642 3.358 24 O -0.614 6.614 25 N -0.665 5.665 26 C 0.061 3.939 27 C -0.183 4.183 28 C -0.164 4.164 29 H 0.273 0.727 30 H 0.013 0.987 31 H 0.008 0.992 32 H 0.407 0.593 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.421 0.579 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.719 -19.705 -4.442 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.110 3.890 10 N -0.355 5.355 11 C 0.255 3.745 12 O -0.464 6.464 13 C -0.097 4.097 14 N -0.214 5.214 15 C -0.088 4.088 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.138 4.138 19 C -0.041 4.041 20 H 0.098 0.902 21 C 0.023 3.977 22 O -0.253 6.253 23 C 0.395 3.605 24 O -0.506 6.506 25 N -0.323 5.323 26 C -0.043 4.043 27 C -0.221 4.221 28 C -0.202 4.202 29 H 0.082 0.918 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.243 0.757 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.259 0.741 46 H 0.137 0.863 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.135 0.865 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 22.918 -19.078 -4.787 30.201 hybrid contribution -1.036 1.622 0.149 1.930 sum 21.882 -17.456 -4.637 28.373 Atomic orbital electron populations 1.69984 1.07706 1.28638 1.50631 1.25625 0.95561 1.02723 0.93579 0.85837 0.79242 0.79313 0.79345 1.19199 1.19685 1.18436 1.21308 0.90086 0.94534 1.52663 0.92414 1.19051 0.93276 0.81284 0.95420 1.46256 1.07234 1.09646 1.72335 1.22736 0.82221 0.93918 0.75649 1.90533 1.55237 1.48213 1.52446 1.22500 0.89923 0.90666 1.06610 1.62509 1.03544 1.52583 1.02806 1.22329 0.96931 0.98503 0.91079 1.21523 0.92839 1.01662 0.98368 1.21571 1.00676 0.98974 0.94458 1.21502 0.91450 1.02628 0.98234 1.22159 0.97044 0.97247 0.87626 0.90186 1.23103 0.98747 0.77632 0.98250 1.86320 1.68507 1.28238 1.42255 1.18422 0.78799 0.83049 0.80209 1.90993 1.41296 1.69160 1.49127 1.43881 1.51772 1.09167 1.27499 1.21639 1.04745 0.88581 0.89340 1.23568 0.99103 0.96190 1.03273 1.23536 0.95762 0.98588 1.02359 0.91820 0.96929 0.97413 0.75728 0.87202 0.85132 0.89991 0.94936 0.90581 0.90272 0.93625 0.89862 0.89982 0.91324 0.92670 0.91128 0.74138 0.86288 0.87412 0.87096 0.86481 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.96 21.45 0.30 -56.01 16 2 C 0.03 1.46 5.47 84.66 0.46 1.92 16 3 Si 0.94 44.68 27.47 68.60 1.88 46.57 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 7 C -0.55 -30.68 9.83 25.60 0.25 -30.42 16 8 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 9 C 0.23 11.53 4.50 85.64 0.39 11.92 16 10 N -0.70 -28.11 5.55 -466.78 -2.59 -30.70 16 11 C 0.47 16.75 7.13 87.66 0.62 17.38 16 12 O -0.58 -24.20 11.62 -3.04 -0.04 -24.24 16 13 C 0.03 0.90 5.30 85.55 0.45 1.36 16 14 N -0.49 -12.25 4.65 -875.67 -4.07 -16.32 16 15 C 0.04 0.94 5.09 86.33 0.44 1.38 16 16 C -0.11 -1.99 6.09 30.65 0.19 -1.81 16 17 C -0.12 -2.31 6.00 30.68 0.18 -2.12 16 18 C -0.10 -2.11 5.19 30.65 0.16 -1.95 16 19 C 0.07 1.79 1.75 44.94 0.08 1.86 16 20 H 0.08 2.68 5.36 -2.39 -0.01 2.67 16 21 C 0.10 2.69 4.71 71.98 0.34 3.03 16 22 O -0.34 -8.34 9.33 -55.51 -0.52 -8.86 16 23 C 0.64 16.58 8.75 129.79 1.14 17.72 16 24 O -0.61 -20.92 15.70 19.81 0.31 -20.61 16 25 N -0.66 -11.53 5.57 -570.14 -3.18 -14.71 16 26 C 0.06 0.94 6.43 44.99 0.29 1.23 16 27 C -0.18 -1.81 10.46 30.60 0.32 -1.49 16 28 C -0.16 -1.35 10.46 30.60 0.32 -1.03 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 31 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 32 H 0.41 14.46 8.32 -92.71 -0.77 13.68 16 33 H 0.11 2.76 6.21 -2.38 -0.01 2.74 16 34 H 0.13 2.75 8.06 -2.39 -0.02 2.74 16 35 H 0.08 1.76 8.06 -2.39 -0.02 1.74 16 36 H 0.03 1.01 6.00 -2.39 -0.01 1.00 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.63 7.53 -2.39 -0.02 1.61 16 42 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 1.70 5.98 -2.39 -0.01 1.69 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.42 4.88 8.94 -92.70 -0.83 4.05 16 46 H 0.12 2.36 7.40 -2.39 -0.02 2.34 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -73.34 395.96 -2.95 -76.29 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: -0.69 Total: 29.62 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 5.63 Total: 18.97 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -9.54 Total: -117.74 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.24 Total: -53.71 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -73.34 -2.95 -76.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810040259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.943 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds