Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99930 * 2 1 4 4 O 1.21583 * 120.00459 * 179.97438 * 3 2 1 5 5 N 1.34783 * 119.99812 * 0.02562 * 3 2 1 6 6 C 1.46504 * 119.99708 * 180.02562 * 5 3 2 7 7 C 1.53041 * 109.45479 * 204.99459 * 6 5 3 8 8 C 1.53191 * 109.30997 * 178.61257 * 7 6 5 9 9 N 1.46922 * 108.89600 * 54.56397 * 8 7 6 10 10 C 1.36946 * 120.63228 * 126.45753 * 9 8 7 11 11 H 1.07997 * 119.99814 * 328.49621 * 10 9 8 12 12 C 1.38804 * 119.99849 * 148.49560 * 10 9 8 13 13 N 1.31625 * 120.00254 * 342.57309 * 12 10 9 14 14 Si 1.86798 * 120.00154 * 162.58129 * 12 10 9 15 15 H 1.48501 * 109.47257 * 59.99025 * 14 12 10 16 16 H 1.48499 * 109.47549 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46560 * 299.99835 * 14 12 10 18 18 C 1.46960 * 118.71459 * 306.64630 * 9 8 7 19 19 C 1.53033 * 109.46218 * 84.92927 * 6 5 3 20 20 C 1.46497 * 120.00369 * 180.02562 * 2 1 3 21 21 H 1.09000 * 110.33278 * 127.83768 * 20 2 1 22 22 C 1.54499 * 110.36751 * 250.19793 * 20 2 1 23 23 C 1.54575 * 102.14166 * 103.48992 * 22 20 2 24 24 C 1.53001 * 110.43925 * 268.10603 * 23 22 20 25 25 C 1.53003 * 110.43832 * 145.59450 * 23 22 20 26 26 O 1.45826 * 104.44617 * 26.85039 * 23 22 20 27 27 C 1.34069 * 109.90877 * 329.39238 * 26 23 22 28 28 O 1.20821 * 125.09495 * 200.83284 * 27 26 23 29 29 H 1.09000 * 109.47205 * 87.10445 * 1 2 3 30 30 H 1.09007 * 109.46763 * 207.10189 * 1 2 3 31 31 H 1.09003 * 109.47208 * 327.09654 * 1 2 3 32 32 H 0.96990 * 119.99995 * 359.97438 * 5 3 2 33 33 H 1.09000 * 109.44878 * 324.95585 * 6 5 3 34 34 H 1.09006 * 109.49833 * 58.66357 * 7 6 5 35 35 H 1.08997 * 109.50024 * 298.56654 * 7 6 5 36 36 H 1.09000 * 109.58959 * 174.42484 * 8 7 6 37 37 H 1.09005 * 109.59144 * 294.70256 * 8 7 6 38 38 H 0.97000 * 120.00110 * 180.02562 * 13 12 10 39 39 H 1.09001 * 109.46648 * 293.56708 * 18 9 8 40 40 H 1.09008 * 109.71217 * 173.28637 * 18 9 8 41 41 H 1.09002 * 109.50062 * 301.33080 * 19 6 5 42 42 H 1.08998 * 109.50146 * 61.43041 * 19 6 5 43 43 H 1.08994 * 110.86793 * 221.65302 * 22 20 2 44 44 H 1.09001 * 110.86709 * 345.33227 * 22 20 2 45 45 H 1.09004 * 109.46855 * 174.88712 * 24 23 22 46 46 H 1.08996 * 109.47405 * 294.88868 * 24 23 22 47 47 H 1.09005 * 109.46717 * 54.89214 * 24 23 22 48 48 H 1.09000 * 109.46669 * 303.51682 * 25 23 22 49 49 H 1.08997 * 109.47527 * 63.51681 * 25 23 22 50 50 H 1.09000 * 109.47202 * 183.52252 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1974 3.6032 0.0000 7 6 1.3201 4.6986 0.6104 8 6 2.1016 6.0158 0.6399 9 7 2.5830 6.3140 -0.7158 10 6 2.3119 7.5212 -1.3027 11 1 1.3952 8.0419 -1.0682 12 6 3.2153 8.0756 -2.1990 13 7 4.4577 7.6425 -2.2339 14 14 2.6678 9.4364 -3.3556 15 1 2.1904 10.5978 -2.5627 16 1 3.8119 9.8543 -4.2051 17 1 1.5658 8.9394 -4.2181 18 6 3.3573 5.2901 -1.4313 19 6 2.5617 3.9810 -1.4376 20 6 2.1976 -1.2687 -0.0006 21 1 2.9299 -1.2828 -0.8078 22 6 2.8914 -1.4896 1.3621 23 6 1.9693 -2.5346 2.0308 24 6 0.8952 -1.8400 2.8702 25 6 2.7886 -3.4936 2.8967 26 8 1.3606 -3.2495 0.9150 27 6 1.2382 -2.4307 -0.1395 28 8 0.4762 -2.5959 -1.0625 29 1 -0.3633 0.0519 -1.0263 30 1 -0.3633 -0.9149 0.4682 31 1 -0.3634 0.8628 0.5583 32 1 0.4950 2.3344 0.0005 33 1 3.1081 3.4967 0.5894 34 1 1.0417 4.4178 1.6262 35 1 0.4207 4.8226 0.0073 36 1 1.4497 6.8199 0.9813 37 1 2.9509 5.9218 1.3168 38 1 5.0891 8.0302 -2.8599 39 1 4.3104 5.1360 -0.9254 40 1 3.5361 5.6140 -2.4566 41 1 3.1671 3.1896 -1.8795 42 1 1.6506 4.1118 -2.0214 43 1 3.8963 -1.8891 1.2259 44 1 2.9146 -0.5658 1.9402 45 1 0.2009 -2.5844 3.2600 46 1 1.3666 -1.3133 3.6999 47 1 0.3527 -1.1275 2.2487 48 1 3.5595 -3.9650 2.2871 49 1 3.2570 -2.9391 3.7099 50 1 2.1331 -4.2602 3.3100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813633745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -77.406004 kcal Electronic energy + Delta-G solvation = -31143.351529 eV Core-core repulsion = 26978.918261 eV Total energy + Delta-G solvation = -4164.433267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.99945 -40.00399 -38.23717 -37.59326 -35.68729 -34.55533 -33.95046 -32.26613 -30.94998 -29.98458 -29.27900 -28.07291 -26.85513 -25.40198 -24.72376 -22.63192 -22.24908 -21.81295 -20.65665 -19.87177 -19.43578 -18.07498 -17.32633 -17.27902 -16.74529 -16.57137 -15.81359 -15.62835 -15.03437 -14.74587 -14.56504 -14.23906 -14.10912 -13.82948 -13.66448 -13.53615 -13.49169 -13.24908 -13.01009 -12.87197 -12.75480 -12.65286 -12.54447 -12.36024 -12.07800 -11.94360 -11.48277 -11.44929 -11.15010 -10.98986 -10.93885 -10.72806 -10.62011 -10.40788 -10.26448 -10.15066 -10.03249 -9.77971 -9.57596 -9.05696 -8.63645 -8.42211 -6.64273 -5.79555 -3.25182 1.39649 2.53951 2.67930 3.16931 3.33478 3.38157 3.44439 3.45273 3.87407 3.91315 4.11772 4.21061 4.46237 4.49192 4.62837 4.86918 5.03635 5.05686 5.12004 5.16137 5.24345 5.27038 5.32992 5.39143 5.42376 5.44566 5.52188 5.56211 5.63086 5.64684 5.81086 5.99531 6.06759 6.22296 6.28244 6.34714 6.41512 6.53874 6.65212 6.70613 6.81108 6.93139 6.96538 6.99221 7.34862 7.63442 7.80228 7.91954 8.46483 8.59049 9.20615 9.83275 10.42334 11.29133 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026135 B = 0.002347 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.115103 B =11926.425441 C =12083.926284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.624 5.624 3 C 0.709 3.291 4 O -0.579 6.579 5 N -0.735 5.735 6 C 0.168 3.832 7 C -0.139 4.139 8 C 0.150 3.850 9 N -0.591 5.591 10 C -0.260 4.260 11 H 0.063 0.937 12 C 0.008 3.992 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.177 3.823 19 C -0.147 4.147 20 C 0.109 3.891 21 H 0.123 0.877 22 C -0.152 4.152 23 C 0.101 3.899 24 C -0.167 4.167 25 C -0.142 4.142 26 O -0.334 6.334 27 C 0.485 3.515 28 O -0.440 6.440 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.391 0.609 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.255 0.745 39 H 0.022 0.978 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 -21.407 11.566 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.365 5.365 3 C 0.410 3.590 4 O -0.456 6.456 5 N -0.389 5.389 6 C 0.064 3.936 7 C -0.179 4.179 8 C 0.022 3.978 9 N -0.314 5.314 10 C -0.390 4.390 11 H 0.081 0.919 12 C -0.192 4.192 13 N -0.541 5.541 14 Si 0.731 3.269 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.210 1.210 18 C 0.051 3.949 19 C -0.188 4.188 20 C 0.003 3.997 21 H 0.140 0.860 22 C -0.190 4.190 23 C 0.065 3.935 24 C -0.225 4.225 25 C -0.199 4.199 26 O -0.251 6.251 27 C 0.323 3.677 28 O -0.322 6.322 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.226 0.774 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.103 0.897 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.626 -21.607 11.044 25.154 hybrid contribution -0.726 0.716 -0.777 1.282 sum -7.352 -20.891 10.267 24.411 Atomic orbital electron populations 1.21904 0.79545 1.02678 1.02842 1.46787 1.06118 1.03494 1.80143 1.15780 0.85353 0.79919 0.77926 1.90946 1.11195 1.85908 1.57512 1.45679 1.09643 1.04865 1.78720 1.20952 0.94905 0.79612 0.98083 1.22353 0.99374 0.96996 0.99139 1.20829 0.95566 0.92949 0.88424 1.44046 1.63244 1.13385 1.10705 1.19068 1.00705 0.96814 1.22372 0.91908 1.25137 0.94505 0.97991 1.01571 1.70039 1.02115 1.44481 1.37448 0.86403 0.77566 0.81894 0.81056 1.20811 1.21628 1.20988 1.20674 0.91219 0.84280 0.98737 1.22575 1.01058 1.00190 0.94934 1.22022 0.94355 0.82716 1.00619 0.85973 1.23483 0.99460 1.00660 0.95415 1.23256 0.92998 0.91871 0.85371 1.22316 0.98669 1.01020 1.00451 1.21876 0.99687 0.99105 0.99266 1.87108 1.75346 1.39433 1.23198 1.22890 0.80846 0.82508 0.81460 1.90752 1.35918 1.73455 1.32039 0.91540 0.91365 0.90766 0.77398 0.89923 0.92669 0.91912 0.92339 0.96195 0.93500 0.95978 0.90142 0.92772 0.92741 0.88015 0.87453 0.90907 0.89773 0.91598 0.91027 0.89729 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 8.16 59.85 0.49 1.14 16 2 N -0.62 -7.03 2.97 -179.73 -0.53 -7.57 16 3 C 0.71 10.23 7.77 -86.91 -0.68 9.56 16 4 O -0.58 -10.43 15.49 5.29 0.08 -10.35 16 5 N -0.73 -10.04 4.94 -58.64 -0.29 -10.33 16 6 C 0.17 2.83 2.42 -67.89 -0.16 2.67 16 7 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 8 C 0.15 3.01 6.51 -3.71 -0.02 2.99 16 9 N -0.59 -14.59 2.98 -172.29 -0.51 -15.10 16 10 C -0.26 -7.05 9.54 -15.06 -0.14 -7.20 16 11 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 12 C 0.01 0.21 4.87 -17.43 -0.08 0.13 16 13 N -0.90 -26.20 11.51 55.49 0.64 -25.57 16 14 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.18 4.27 5.28 -3.69 -0.02 4.25 16 19 C -0.15 -2.90 5.65 -26.62 -0.15 -3.06 16 20 C 0.11 1.16 3.21 -67.99 -0.22 0.94 16 21 H 0.12 1.38 8.11 -51.93 -0.42 0.96 16 22 C -0.15 -1.25 5.52 -25.12 -0.14 -1.39 16 23 C 0.10 0.71 1.24 -89.79 -0.11 0.60 16 24 C -0.17 -1.00 8.77 37.16 0.33 -0.67 16 25 C -0.14 -0.69 8.91 37.16 0.33 -0.36 16 26 O -0.33 -3.27 10.48 -38.49 -0.40 -3.68 16 27 C 0.48 5.38 6.09 36.31 0.22 5.60 16 28 O -0.44 -6.09 17.02 -18.41 -0.31 -6.41 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.57 5.05 -51.93 -0.26 0.31 16 31 H 0.07 0.51 6.52 -51.93 -0.34 0.18 16 32 H 0.39 4.31 6.40 -40.82 -0.26 4.04 16 33 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 2.17 6.37 -51.92 -0.33 1.84 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.10 0.73 7.92 -51.93 -0.41 0.32 16 44 H 0.11 1.00 7.26 -51.93 -0.38 0.62 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.45 5.72 -51.93 -0.30 0.15 16 48 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 49 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -33.17 388.51 -9.14 -42.32 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.13 Total: 1.45 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -0.51 Total: 12.83 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.70 Total: -58.57 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.63 Total: -20.43 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.17 -9.14 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813633745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.087 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds