Wall clock time and date at job start Sat Apr 11 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48505 * 109.47134 * 270.00133 * 3 2 1 5 5 H 1.48497 * 109.47296 * 29.99901 * 3 2 1 6 6 H 1.48493 * 109.47463 * 150.00446 * 3 2 1 7 7 C 1.37876 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00072 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00053 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00045 * 89.99683 * 10 9 7 12 12 C 1.53006 * 109.47063 * 90.00378 * 11 10 9 13 13 N 1.46898 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.47015 * 110.99642 * 293.62955 * 13 12 11 15 15 C 1.53098 * 109.25723 * 177.60943 * 14 13 12 16 16 O 1.43023 * 109.25952 * 56.85124 * 15 14 13 17 17 C 1.43014 * 113.73189 * 301.32868 * 16 15 14 18 18 C 1.47016 * 110.99994 * 169.99953 * 13 12 11 19 19 C 1.34776 * 119.99683 * 269.99776 * 10 9 7 20 20 O 1.21286 * 119.99924 * 180.02562 * 19 10 9 21 21 C 1.50697 * 120.00284 * 359.97438 * 19 10 9 22 22 C 1.52998 * 109.47331 * 180.02562 * 21 19 10 23 23 H 1.09002 * 110.21640 * 305.70205 * 22 21 19 24 24 C 1.54481 * 110.24717 * 183.77491 * 22 21 19 25 25 C 1.54632 * 101.76588 * 215.58546 * 24 22 21 26 26 C 1.51290 * 104.19578 * 24.79507 * 25 24 22 27 27 O 1.21269 * 124.94287 * 163.77387 * 26 25 24 28 28 N 1.34563 * 110.13760 * 343.67724 * 26 25 24 29 29 H 0.97001 * 119.99900 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47281 * 59.99145 * 9 7 2 31 31 H 1.09004 * 109.46569 * 299.99592 * 9 7 2 32 32 H 1.08994 * 109.47641 * 330.00001 * 11 10 9 33 33 H 1.09009 * 109.47090 * 209.99868 * 11 10 9 34 34 H 1.08994 * 109.47199 * 59.99353 * 12 11 10 35 35 H 1.08996 * 109.46529 * 299.99747 * 12 11 10 36 36 H 1.08999 * 109.50673 * 297.54208 * 14 13 12 37 37 H 1.09004 * 109.50788 * 57.67624 * 14 13 12 38 38 H 1.08997 * 109.51060 * 296.91507 * 15 14 13 39 39 H 1.09000 * 109.51173 * 176.78603 * 15 14 13 40 40 H 1.08999 * 109.51224 * 298.73604 * 17 16 15 41 41 H 1.09000 * 109.50636 * 178.60446 * 17 16 15 42 42 H 1.09000 * 109.50136 * 302.32362 * 18 13 12 43 43 H 1.08996 * 109.50988 * 62.41201 * 18 13 12 44 44 H 1.09001 * 109.47107 * 300.00566 * 21 19 10 45 45 H 1.09006 * 109.46646 * 60.00275 * 21 19 10 46 46 H 1.09009 * 110.96530 * 333.70142 * 24 22 21 47 47 H 1.08991 * 110.97412 * 97.46462 * 24 22 21 48 48 H 1.08998 * 110.48782 * 143.47239 * 25 24 22 49 49 H 1.08998 * 110.48588 * 266.12221 * 25 24 22 50 50 H 0.96996 * 124.43585 * 179.64463 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0022 11 6 4.2434 -3.2651 -1.2715 12 6 5.6883 -3.0245 -1.7136 13 7 5.9324 -3.7156 -2.9866 14 6 5.8643 -5.1742 -2.8156 15 6 6.0645 -5.8517 -4.1739 16 8 7.3117 -5.4298 -4.7323 17 6 7.4120 -4.0146 -4.9130 18 6 7.2255 -3.3185 -3.5623 19 6 4.2249 -3.2114 1.1645 20 8 4.6296 -4.3547 1.1636 21 6 3.9749 -2.5016 2.4701 22 6 4.3072 -3.4395 3.6323 23 1 3.7568 -4.3749 3.5307 24 6 3.9678 -2.7631 4.9791 25 6 5.0974 -3.2938 5.8920 26 6 6.2203 -3.6301 4.9355 27 8 7.3756 -3.8109 5.2567 28 7 5.7506 -3.7018 3.6765 29 1 -0.4850 0.8401 -0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8744 -0.6801 -0.8912 32 1 3.5624 -2.8806 -2.0306 33 1 4.0765 -4.3345 -1.1418 34 1 6.3694 -3.4090 -0.9545 35 1 5.8552 -1.9552 -1.8433 36 1 6.6468 -5.4971 -2.1290 37 1 4.8894 -5.4483 -2.4124 38 1 5.2521 -5.5709 -4.8441 39 1 6.0717 -6.9339 -4.0434 40 1 6.6388 -3.6802 -5.6046 41 1 8.3939 -3.7680 -5.3170 42 1 7.2443 -2.2379 -3.7040 43 1 8.0297 -3.6111 -2.8872 44 1 4.6054 -1.6144 2.5279 45 1 2.9270 -2.2071 2.5286 46 1 4.0136 -1.6774 4.8927 47 1 2.9909 -3.0833 5.3411 48 1 5.4133 -2.5232 6.5952 49 1 4.7698 -4.1866 6.4246 50 1 6.2949 -3.9000 2.8985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824902029.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:18 Heat of formation + Delta-G solvation = -111.753934 kcal Electronic energy + Delta-G solvation = -30697.605770 eV Core-core repulsion = 26531.683065 eV Total energy + Delta-G solvation = -4165.922705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.44391 -39.71546 -39.05666 -36.63934 -36.06440 -35.02677 -32.68942 -31.43542 -31.20885 -31.13480 -29.71338 -27.93636 -26.41017 -24.82984 -24.12692 -22.69185 -22.19041 -21.12645 -20.46550 -20.39505 -18.48056 -17.30003 -17.15180 -16.71928 -16.52049 -16.36155 -16.13807 -15.60687 -15.21748 -15.07782 -15.00419 -14.73212 -14.38443 -14.15931 -13.97880 -13.57557 -13.28921 -13.18838 -13.15228 -12.73347 -12.57537 -12.49603 -12.29246 -12.19810 -11.96771 -11.59040 -11.48970 -11.38961 -11.33964 -11.17555 -11.05994 -10.83653 -10.74991 -10.43671 -10.35829 -9.83653 -9.78333 -9.72897 -9.33375 -8.96356 -8.83746 -8.47073 -7.95739 -6.32907 -4.35840 2.68227 3.08582 3.09762 3.15231 3.18578 3.37783 3.52340 3.72942 3.97761 4.15751 4.39006 4.47255 4.74236 4.76846 4.90113 4.91092 4.96223 4.99147 5.03742 5.15510 5.22206 5.27362 5.36831 5.40742 5.43226 5.48162 5.52764 5.61341 5.66696 5.71455 5.73060 5.80345 5.83615 5.86268 6.05491 6.10140 6.16068 6.27287 6.31807 6.51933 6.85034 6.88466 6.92975 7.01244 7.17301 7.19548 7.30855 7.93791 8.25990 8.36398 8.65229 8.74628 9.25720 10.79416 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006715 B = 0.004226 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4168.705067 B = 6624.104085 C = 9870.509015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.207 3.793 10 N -0.587 5.587 11 C 0.124 3.876 12 C 0.044 3.956 13 N -0.533 5.533 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.518 3.482 20 O -0.571 6.571 21 C -0.149 4.149 22 C 0.147 3.853 23 H 0.089 0.911 24 C -0.130 4.130 25 C -0.155 4.155 26 C 0.515 3.485 27 O -0.549 6.549 28 N -0.714 5.714 29 H 0.268 0.732 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.797 -4.559 -0.340 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.697 3.303 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.086 3.914 10 N -0.316 5.316 11 C 0.000 4.000 12 C -0.085 4.085 13 N -0.258 5.258 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.307 6.307 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.307 3.693 20 O -0.452 6.452 21 C -0.190 4.190 22 C 0.041 3.959 23 H 0.107 0.893 24 C -0.168 4.168 25 C -0.196 4.196 26 C 0.301 3.699 27 O -0.428 6.428 28 N -0.369 5.369 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.113 0.887 45 H 0.143 0.857 46 H 0.105 0.895 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.124 -5.057 -0.476 10.443 hybrid contribution 0.732 1.083 0.140 1.315 sum 9.857 -3.975 -0.336 10.633 Atomic orbital electron populations 1.69883 1.06227 1.27334 1.49015 1.24863 0.94703 0.98852 0.94122 0.86944 0.80329 0.84018 0.79002 1.19883 1.20800 1.18955 1.21328 0.88848 0.95053 1.52973 0.90286 1.19865 0.96089 0.77764 0.97664 1.47883 1.63240 1.15943 1.04571 1.21230 0.94580 0.98160 0.86015 1.22502 0.98041 0.98952 0.88985 1.62139 1.31047 1.06125 1.26522 1.22846 1.02769 0.88034 0.97640 1.22691 0.86332 0.99020 0.93255 1.87963 1.36847 1.22437 1.83500 1.22648 1.02151 0.80840 0.95583 1.22772 0.90445 1.01068 0.96749 1.20455 0.76807 0.86233 0.85833 1.90619 1.48471 1.18232 1.87915 1.22090 1.06315 0.99074 0.91492 1.21495 0.81306 0.98722 0.94387 0.89265 1.22730 0.99162 1.01673 0.93241 1.22342 0.95129 1.03676 0.98416 1.20960 0.88915 0.75663 0.84359 1.90719 1.19486 1.51891 1.80686 1.46422 1.10364 1.70888 1.09268 0.92235 0.94732 0.95214 0.89290 0.90638 0.94547 0.90598 0.93902 0.89000 0.92117 0.88531 0.92150 0.88656 0.89619 0.94121 0.88712 0.85720 0.89483 0.88766 0.88234 0.87947 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.33 13.96 55.43 0.77 -23.56 16 2 C 0.08 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 18.56 27.47 -169.99 -4.67 13.89 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 7 C -0.54 -13.12 9.84 -34.44 -0.34 -13.46 16 8 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 9 C 0.21 4.11 4.03 -5.20 -0.02 4.09 16 10 N -0.59 -10.60 2.46 -175.05 -0.43 -11.03 16 11 C 0.12 2.06 5.34 -4.04 -0.02 2.04 16 12 C 0.04 0.64 5.28 -3.82 -0.02 0.62 16 13 N -0.53 -7.04 4.73 -234.31 -1.11 -8.15 16 14 C 0.02 0.19 5.44 -3.71 -0.02 0.17 16 15 C 0.06 0.71 7.01 37.21 0.26 0.97 16 16 O -0.39 -4.79 10.83 -35.23 -0.38 -5.17 16 17 C 0.06 0.67 7.01 37.21 0.26 0.93 16 18 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 19 C 0.52 9.02 7.49 -10.99 -0.08 8.93 16 20 O -0.57 -10.72 14.53 5.55 0.08 -10.64 16 21 C -0.15 -2.17 3.86 -27.89 -0.11 -2.28 16 22 C 0.15 1.85 3.00 -67.01 -0.20 1.65 16 23 H 0.09 1.18 7.95 -51.93 -0.41 0.77 16 24 C -0.13 -1.26 6.69 -25.10 -0.17 -1.42 16 25 C -0.16 -1.58 6.86 -26.74 -0.18 -1.76 16 26 C 0.51 7.47 8.43 -10.79 -0.09 7.38 16 27 O -0.55 -10.12 18.03 5.57 0.10 -10.02 16 28 N -0.71 -10.03 5.62 -52.72 -0.30 -10.33 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.03 0.66 5.50 -51.93 -0.29 0.37 16 31 H 0.03 0.59 7.50 -51.93 -0.39 0.20 16 32 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 33 H 0.08 1.28 5.80 -51.92 -0.30 0.98 16 34 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.17 6.38 -51.93 -0.33 0.83 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.09 1.31 7.40 -51.93 -0.38 0.93 16 45 H 0.12 1.90 8.00 -51.93 -0.42 1.49 16 46 H 0.09 0.80 7.91 -51.92 -0.41 0.39 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.41 6.26 8.00 -40.82 -0.33 5.93 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -30.65 396.16 -9.14 -39.79 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -8.33 Total: 9.32 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.85 Total: 9.92 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.06 Total: -53.06 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.20 Total: -25.83 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -4.67 Total: 13.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.65 -9.14 -39.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824902029.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.965 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds