Wall clock time and date at job start Sat Apr 11 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 114.00122 * 2 1 4 4 C 1.53006 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47106 * 64.99999 * 4 3 2 6 6 C 1.36935 * 120.00285 * 94.15522 * 5 4 3 7 7 H 1.07997 * 120.00316 * 213.51774 * 6 5 4 8 8 C 1.38814 * 119.99688 * 33.79947 * 6 5 4 9 9 N 1.31619 * 120.00109 * 22.48095 * 8 6 5 10 10 Si 1.86804 * 119.99788 * 202.48691 * 8 6 5 11 11 H 1.48490 * 109.47264 * 89.99754 * 10 8 6 12 12 H 1.48504 * 109.46615 * 209.99821 * 10 8 6 13 13 H 1.48499 * 109.47114 * 329.99549 * 10 8 6 14 14 C 1.46508 * 119.99795 * 274.16095 * 5 4 3 15 15 N 1.46492 * 109.46949 * 269.99805 * 14 5 4 16 16 C 1.33858 * 124.19502 * 90.02662 * 15 14 5 17 17 O 1.21542 * 123.79053 * 0.03116 * 16 15 14 18 18 N 1.34675 * 112.42466 * 179.97438 * 16 15 14 19 19 C 1.46863 * 106.42379 * 359.97438 * 18 16 15 20 20 C 1.52467 * 110.48897 * 241.45833 * 19 18 16 21 21 C 1.53085 * 109.58009 * 178.66138 * 20 19 18 22 22 C 1.53014 * 109.41771 * 59.15091 * 21 20 19 23 23 C 1.53003 * 109.45845 * 179.52057 * 22 21 20 24 24 C 1.53002 * 109.50751 * 299.52559 * 22 21 20 25 25 C 1.52478 * 110.48604 * 118.54426 * 19 18 16 26 26 C 1.34916 * 124.19737 * 269.72459 * 15 14 5 27 27 O 1.21241 * 127.24940 * 359.97438 * 26 15 14 28 28 H 1.09000 * 109.46710 * 300.00348 * 1 2 3 29 29 H 1.09001 * 109.46985 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47823 * 60.00118 * 3 2 1 32 32 H 1.09004 * 109.47430 * 299.99913 * 3 2 1 33 33 H 1.08991 * 109.47225 * 304.99911 * 4 3 2 34 34 H 1.09001 * 109.47391 * 184.99839 * 4 3 2 35 35 H 0.96998 * 119.99815 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47143 * 30.00086 * 14 5 4 37 37 H 1.09001 * 109.46995 * 149.99562 * 14 5 4 38 38 H 0.97002 * 126.79357 * 179.97438 * 18 16 15 39 39 H 1.08998 * 109.45360 * 298.69566 * 20 19 18 40 40 H 1.08996 * 109.45348 * 58.62798 * 20 19 18 41 41 H 1.09001 * 109.47906 * 299.16657 * 21 20 19 42 42 H 1.08997 * 109.47530 * 179.13257 * 21 20 19 43 43 H 1.09000 * 109.46189 * 59.53949 * 22 21 20 44 44 H 1.08992 * 109.47175 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.46780 * 300.03681 * 23 22 21 46 46 H 1.09001 * 109.47200 * 60.02985 * 23 22 21 47 47 H 1.09003 * 109.47915 * 300.48542 * 24 22 21 48 48 H 1.09000 * 109.47709 * 180.45198 * 24 22 21 49 49 H 1.08998 * 109.45163 * 301.37069 * 25 19 18 50 50 H 1.09004 * 109.44914 * 61.30268 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.3495 1.3479 -2.3098 7 1 4.1581 1.0176 -3.3201 8 6 4.9788 2.5646 -2.0849 9 7 5.6096 2.7794 -0.9498 10 14 4.9303 3.8971 -3.3932 11 1 3.7383 4.7566 -3.1804 12 1 6.1600 4.7248 -3.3024 13 1 4.8543 3.2692 -4.7367 14 6 4.0191 -0.8958 -1.3695 15 7 5.3358 -1.3818 -0.9500 16 6 5.6453 -1.7271 0.3057 17 8 4.8625 -1.6738 1.2339 18 7 6.9212 -2.1413 0.4250 19 6 7.5128 -2.0553 -0.9165 20 6 7.9601 -3.4332 -1.3918 21 6 8.5423 -3.3250 -2.8035 22 6 9.7303 -2.3607 -2.7912 23 6 10.3203 -2.2610 -4.1994 24 6 9.2609 -0.9774 -2.3360 25 6 8.6816 -1.0761 -0.9226 26 6 6.3853 -1.5425 -1.7825 27 8 6.4174 -1.3213 -2.9741 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9786 2.1764 0.0902 35 1 6.0489 3.6297 -0.7926 36 1 3.2503 -1.3344 -0.7334 37 1 3.8395 -1.1814 -2.4060 38 1 7.3624 -2.4378 1.2364 39 1 8.7205 -3.8217 -0.7144 40 1 7.1048 -4.1088 -1.4027 41 1 7.7776 -2.9510 -3.4843 42 1 8.8755 -4.3082 -3.1355 43 1 10.4912 -2.7306 -2.1039 44 1 11.1669 -1.5746 -4.1908 45 1 10.6547 -3.2465 -4.5238 46 1 9.5596 -1.8910 -4.8868 47 1 8.4940 -0.6111 -3.0185 48 1 10.1060 -0.2890 -2.3352 49 1 8.3336 -0.0936 -0.6034 50 1 9.4533 -1.4277 -0.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840154846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:24 Heat of formation + Delta-G solvation = -79.230708 kcal Electronic energy + Delta-G solvation = -32780.274707 eV Core-core repulsion = 28615.762314 eV Total energy + Delta-G solvation = -4164.512392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93802 -38.52405 -37.40901 -37.12287 -35.43853 -35.32131 -33.37711 -31.25535 -30.81837 -30.66265 -28.85263 -26.30255 -25.81573 -25.56562 -23.35101 -22.79182 -22.72766 -21.22121 -20.75918 -20.09353 -18.82759 -17.34286 -16.93990 -16.10092 -15.89340 -15.63417 -15.17686 -15.12369 -14.82776 -14.49327 -14.39818 -14.22318 -14.19426 -14.02268 -13.68688 -13.32286 -13.24866 -12.74886 -12.56404 -12.54635 -12.16994 -11.94515 -11.69462 -11.66333 -11.52281 -11.23250 -11.16897 -11.00873 -10.84619 -10.73498 -10.62858 -10.36799 -10.18071 -10.13280 -10.11093 -10.00392 -9.86819 -9.12762 -8.95436 -8.92733 -8.83186 -8.56993 -6.89302 -5.92998 -3.46628 2.45783 3.05770 3.33258 3.39686 3.42362 3.76061 3.91677 4.42271 4.49101 4.57966 4.74255 4.77974 4.98502 5.16415 5.22978 5.23494 5.44125 5.49386 5.52311 5.61093 5.68424 5.70382 5.75445 5.81020 5.88016 5.92458 5.95698 5.99208 6.02278 6.13087 6.18139 6.27741 6.30777 6.33201 6.41157 6.44013 6.45175 6.49577 6.53591 6.71693 6.89725 7.04144 7.33491 7.54646 7.76190 7.92846 7.96975 8.28626 8.35490 8.93349 9.04988 9.64033 10.20987 11.08421 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.005083 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.525990 B = 5507.196132 C = 7118.801843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.552 5.552 6 C -0.262 4.262 7 H 0.071 0.929 8 C 0.015 3.985 9 N -0.883 5.883 10 Si 0.901 3.099 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.275 1.275 14 C 0.347 3.653 15 N -0.574 5.574 16 C 0.702 3.298 17 O -0.554 6.554 18 N -0.735 5.735 19 C 0.119 3.881 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.087 4.087 23 C -0.146 4.146 24 C -0.120 4.120 25 C -0.107 4.107 26 C 0.538 3.462 27 O -0.464 6.464 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.257 0.743 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.427 0.573 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 -10.189 0.093 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.032 4.032 4 C 0.012 3.988 5 N -0.269 5.269 6 C -0.392 4.392 7 H 0.089 0.911 8 C -0.186 4.186 9 N -0.525 5.525 10 Si 0.730 3.270 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.200 1.200 14 C 0.140 3.860 15 N -0.325 5.325 16 C 0.403 3.597 17 O -0.428 6.428 18 N -0.398 5.398 19 C 0.028 3.972 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.105 4.105 23 C -0.203 4.203 24 C -0.158 4.158 25 C -0.146 4.146 26 C 0.324 3.676 27 O -0.334 6.334 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.269 0.731 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.457 -9.949 -0.088 10.902 hybrid contribution 0.138 1.019 -0.020 1.028 sum 4.594 -8.930 -0.108 10.044 Atomic orbital electron populations 1.22602 0.83374 1.01423 0.98982 1.87947 1.17706 1.29421 1.95156 1.23428 0.98077 0.83432 0.98253 1.21305 0.87764 1.02228 0.87546 1.44541 1.70237 0.99638 1.12525 1.19262 1.33005 0.99683 0.87249 0.91120 1.25156 0.95887 1.00412 0.97106 1.69987 1.33115 1.24037 1.25355 0.86318 0.77110 0.81781 0.81811 1.21237 1.21701 1.20001 1.21888 0.80455 0.84790 0.98846 1.49003 1.16425 1.58729 1.08311 1.16320 0.82480 0.76977 0.83916 1.90926 1.52254 1.59022 1.40629 1.45696 1.12107 1.71787 1.10202 1.21077 0.95029 0.97760 0.83351 1.21583 1.01152 0.93852 0.97991 1.21722 0.98640 0.99263 0.96274 1.21087 0.96779 0.95700 0.96955 1.21801 1.00732 1.01068 0.96706 1.21697 1.01412 0.96548 0.96165 1.21556 0.95248 0.99229 0.98552 1.20404 0.84045 0.75902 0.87287 1.90661 1.81991 1.48027 1.12746 0.95202 0.94862 0.90755 0.95143 0.93589 0.93461 0.86940 0.93343 0.89369 0.90500 0.73108 0.90735 0.91344 0.89672 0.91793 0.91759 0.92940 0.93100 0.92241 0.89440 0.91737 0.90217 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.38 -7.70 9.15 -35.23 -0.32 -8.02 16 3 C 0.05 0.96 6.28 37.16 0.23 1.20 16 4 C 0.14 3.32 5.70 -4.04 -0.02 3.30 16 5 N -0.55 -13.62 2.68 -176.95 -0.47 -14.10 16 6 C -0.26 -6.98 9.49 -15.06 -0.14 -7.12 16 7 H 0.07 1.93 7.93 -52.49 -0.42 1.51 16 8 C 0.02 0.41 4.93 -17.43 -0.09 0.32 16 9 N -0.88 -24.41 11.33 55.49 0.63 -23.78 16 10 Si 0.90 21.26 29.61 -169.99 -5.03 16.23 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.35 7.78 6.05 -63.75 -0.39 7.39 16 15 N -0.57 -12.12 2.85 -124.31 -0.35 -12.47 16 16 C 0.70 14.32 8.63 -87.83 -0.76 13.56 16 17 O -0.55 -12.82 16.53 5.33 0.09 -12.74 16 18 N -0.73 -11.56 5.88 -53.87 -0.32 -11.87 16 19 C 0.12 1.84 1.01 -133.10 -0.13 1.70 16 20 C -0.11 -1.30 5.09 -26.96 -0.14 -1.44 16 21 C -0.12 -1.45 4.95 -26.68 -0.13 -1.59 16 22 C -0.09 -1.01 2.71 -90.61 -0.25 -1.25 16 23 C -0.15 -1.56 9.19 37.16 0.34 -1.22 16 24 C -0.12 -1.71 4.95 -26.69 -0.13 -1.85 16 25 C -0.11 -1.59 5.11 -26.96 -0.14 -1.73 16 26 C 0.54 10.62 6.52 -10.71 -0.07 10.55 16 27 O -0.46 -9.98 13.84 5.59 0.08 -9.91 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.21 7.13 -51.93 -0.37 0.84 16 34 H 0.11 2.98 5.32 -51.93 -0.28 2.71 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.09 1.98 6.47 -51.93 -0.34 1.64 16 37 H 0.08 1.69 7.90 -51.93 -0.41 1.28 16 38 H 0.43 5.40 8.96 -40.82 -0.37 5.03 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.24 6.09 -51.93 -0.32 0.93 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.54 6.13 -51.93 -0.32 1.22 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -30.90 391.18 -8.79 -39.69 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.29 Total: 7.63 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: -0.70 Total: 23.45 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.52 Total: -62.23 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.16 Total: -30.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.90 -8.79 -39.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840154846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.537 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds