Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42892 * 114.00122 * 2 1 4 4 C 1.53006 * 109.47239 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47106 * 64.99999 * 4 3 2 6 6 C 1.36935 * 120.00285 * 94.15522 * 5 4 3 7 7 H 1.07997 * 120.00316 * 213.51774 * 6 5 4 8 8 C 1.38814 * 119.99688 * 33.79947 * 6 5 4 9 9 N 1.31619 * 120.00109 * 22.48095 * 8 6 5 10 10 Si 1.86804 * 119.99788 * 202.48691 * 8 6 5 11 11 H 1.48490 * 109.47264 * 89.99754 * 10 8 6 12 12 H 1.48504 * 109.46615 * 209.99821 * 10 8 6 13 13 H 1.48499 * 109.47114 * 329.99549 * 10 8 6 14 14 C 1.46508 * 119.99795 * 274.16095 * 5 4 3 15 15 N 1.46492 * 109.46949 * 269.99805 * 14 5 4 16 16 C 1.33858 * 124.19502 * 90.02662 * 15 14 5 17 17 O 1.21542 * 123.79053 * 0.03116 * 16 15 14 18 18 N 1.34675 * 112.42466 * 179.97438 * 16 15 14 19 19 C 1.46863 * 106.42379 * 359.97438 * 18 16 15 20 20 C 1.52467 * 110.48897 * 241.45833 * 19 18 16 21 21 C 1.53085 * 109.58009 * 178.66138 * 20 19 18 22 22 C 1.53014 * 109.41771 * 59.15091 * 21 20 19 23 23 C 1.53003 * 109.45845 * 179.52057 * 22 21 20 24 24 C 1.53002 * 109.50751 * 299.52559 * 22 21 20 25 25 C 1.52478 * 110.48604 * 118.54426 * 19 18 16 26 26 C 1.34916 * 124.19737 * 269.72459 * 15 14 5 27 27 O 1.21241 * 127.24940 * 359.97438 * 26 15 14 28 28 H 1.09000 * 109.46710 * 300.00348 * 1 2 3 29 29 H 1.09001 * 109.46985 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47823 * 60.00118 * 3 2 1 32 32 H 1.09004 * 109.47430 * 299.99913 * 3 2 1 33 33 H 1.08991 * 109.47225 * 304.99911 * 4 3 2 34 34 H 1.09001 * 109.47391 * 184.99839 * 4 3 2 35 35 H 0.96998 * 119.99815 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47143 * 30.00086 * 14 5 4 37 37 H 1.09001 * 109.46995 * 149.99562 * 14 5 4 38 38 H 0.97002 * 126.79357 * 179.97438 * 18 16 15 39 39 H 1.08998 * 109.45360 * 298.69566 * 20 19 18 40 40 H 1.08996 * 109.45348 * 58.62798 * 20 19 18 41 41 H 1.09001 * 109.47906 * 299.16657 * 21 20 19 42 42 H 1.08997 * 109.47530 * 179.13257 * 21 20 19 43 43 H 1.09000 * 109.46189 * 59.53949 * 22 21 20 44 44 H 1.08992 * 109.47175 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.46780 * 300.03681 * 23 22 21 46 46 H 1.09001 * 109.47200 * 60.02985 * 23 22 21 47 47 H 1.09003 * 109.47915 * 300.48542 * 24 22 21 48 48 H 1.09000 * 109.47709 * 180.45198 * 24 22 21 49 49 H 1.08998 * 109.45163 * 301.37069 * 25 19 18 50 50 H 1.09004 * 109.44914 * 61.30268 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.3495 1.3479 -2.3098 7 1 4.1581 1.0176 -3.3201 8 6 4.9788 2.5646 -2.0849 9 7 5.6096 2.7794 -0.9498 10 14 4.9303 3.8971 -3.3932 11 1 3.7383 4.7566 -3.1804 12 1 6.1600 4.7248 -3.3024 13 1 4.8543 3.2692 -4.7367 14 6 4.0191 -0.8958 -1.3695 15 7 5.3358 -1.3818 -0.9500 16 6 5.6453 -1.7271 0.3057 17 8 4.8625 -1.6738 1.2339 18 7 6.9212 -2.1413 0.4250 19 6 7.5128 -2.0553 -0.9165 20 6 7.9601 -3.4332 -1.3918 21 6 8.5423 -3.3250 -2.8035 22 6 9.7303 -2.3607 -2.7912 23 6 10.3203 -2.2610 -4.1994 24 6 9.2609 -0.9774 -2.3360 25 6 8.6816 -1.0761 -0.9226 26 6 6.3853 -1.5425 -1.7825 27 8 6.4174 -1.3213 -2.9741 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9786 2.1764 0.0902 35 1 6.0489 3.6297 -0.7926 36 1 3.2503 -1.3344 -0.7334 37 1 3.8395 -1.1814 -2.4060 38 1 7.3624 -2.4378 1.2364 39 1 8.7205 -3.8217 -0.7144 40 1 7.1048 -4.1088 -1.4027 41 1 7.7776 -2.9510 -3.4843 42 1 8.8755 -4.3082 -3.1355 43 1 10.4912 -2.7306 -2.1039 44 1 11.1669 -1.5746 -4.1908 45 1 10.6547 -3.2465 -4.5238 46 1 9.5596 -1.8910 -4.8868 47 1 8.4940 -0.6111 -3.0185 48 1 10.1060 -0.2890 -2.3352 49 1 8.3336 -0.0936 -0.6034 50 1 9.4533 -1.4277 -0.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840154846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -99.378569 kcal Electronic energy + Delta-G solvation = -32781.148384 eV Core-core repulsion = 28615.762314 eV Total energy + Delta-G solvation = -4165.386069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -43.44913 -39.95012 -39.04166 -38.57391 -37.18827 -36.87668 -34.99943 -33.14944 -31.90930 -31.88673 -30.59125 -27.96899 -27.12098 -27.02081 -25.13211 -24.26784 -23.81244 -22.89612 -22.16454 -21.53967 -20.16355 -18.88852 -18.85397 -17.72786 -17.49398 -17.14699 -16.79919 -16.70713 -16.37573 -16.19724 -15.84897 -15.63055 -15.51470 -15.30295 -15.19076 -15.11271 -14.55505 -14.16181 -13.79850 -13.67929 -13.64841 -13.30891 -13.26947 -13.05114 -12.84025 -12.79058 -12.62741 -12.61204 -12.53569 -12.11592 -12.09157 -11.96997 -11.84201 -11.79097 -11.44668 -11.33700 -11.20153 -10.73824 -10.66492 -10.48351 -10.45434 -10.22879 -8.88853 -7.97048 -5.55134 0.88123 1.39206 1.43686 1.52390 1.56613 2.20843 2.40940 2.47149 3.06291 3.09034 3.20306 3.56442 3.60568 3.64997 3.97500 4.13310 4.17454 4.24600 4.38573 4.43683 4.48010 4.50426 4.55175 4.57289 4.60084 4.64411 4.67400 4.74996 4.82910 4.84739 4.91861 4.99521 5.03212 5.04429 5.06825 5.11162 5.17433 5.30233 5.33468 5.40383 5.44902 5.53507 5.63889 5.69446 5.99546 6.29915 6.38934 6.42840 6.73235 7.01436 7.35391 7.63390 8.19618 9.02204 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.005083 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.525990 B = 5507.196132 C = 7118.801843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.146 3.854 5 N -0.564 5.564 6 C -0.269 4.269 7 H 0.058 0.942 8 C -0.025 4.025 9 N -0.908 5.908 10 Si 0.957 3.043 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.275 1.275 14 C 0.355 3.645 15 N -0.587 5.587 16 C 0.696 3.304 17 O -0.586 6.586 18 N -0.709 5.709 19 C 0.129 3.871 20 C -0.100 4.100 21 C -0.120 4.120 22 C -0.080 4.080 23 C -0.145 4.145 24 C -0.119 4.119 25 C -0.102 4.102 26 C 0.524 3.476 27 O -0.488 6.488 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.025 0.975 34 H 0.089 0.911 35 H 0.255 0.745 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.445 0.555 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.043 0.957 48 H 0.074 0.926 49 H 0.036 0.964 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -11.945 0.414 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.018 4.018 4 C 0.020 3.980 5 N -0.283 5.283 6 C -0.399 4.399 7 H 0.075 0.925 8 C -0.223 4.223 9 N -0.551 5.551 10 Si 0.785 3.215 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.200 1.200 14 C 0.148 3.852 15 N -0.337 5.337 16 C 0.397 3.603 17 O -0.463 6.463 18 N -0.374 5.374 19 C 0.038 3.962 20 C -0.139 4.139 21 C -0.158 4.158 22 C -0.098 4.098 23 C -0.202 4.202 24 C -0.157 4.157 25 C -0.141 4.141 26 C 0.311 3.689 27 O -0.360 6.360 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.291 0.709 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.065 -11.746 0.241 13.221 hybrid contribution -0.381 1.488 -0.136 1.542 sum 5.684 -10.258 0.105 11.728 Atomic orbital electron populations 1.22851 0.80610 1.03261 1.00142 1.87892 1.20669 1.28685 1.95360 1.23086 0.95821 0.84129 0.98782 1.21063 0.90103 1.00180 0.86612 1.44540 1.71295 1.00230 1.12275 1.19255 1.32913 1.00457 0.87227 0.92476 1.25748 0.95762 1.01926 0.98873 1.70104 1.33973 1.24198 1.26813 0.85442 0.77032 0.79424 0.79605 1.20416 1.21845 1.20001 1.21571 0.81122 0.83947 0.98560 1.48685 1.16605 1.59094 1.09328 1.16389 0.83706 0.77138 0.83094 1.90899 1.53588 1.60544 1.41309 1.45521 1.10272 1.70289 1.11325 1.21197 0.93171 1.00079 0.81705 1.21653 1.02341 0.91012 0.98862 1.21721 0.97920 1.00755 0.95392 1.21089 0.97225 0.93496 0.98026 1.21790 1.00237 1.02389 0.95780 1.21670 1.00407 0.98878 0.94764 1.21560 0.95757 0.96875 0.99875 1.21190 0.84869 0.75448 0.87373 1.90650 1.82487 1.48863 1.13964 0.93514 0.94129 0.88659 0.93165 0.94306 0.95603 0.89387 0.93615 0.89534 0.90873 0.70859 0.86611 0.91308 0.93065 0.88768 0.88529 0.92193 0.90991 0.94530 0.93786 0.90741 0.94495 0.86802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -16.35 9.15 -148.98 -1.36 -17.71 16 3 C 0.06 2.54 6.28 71.98 0.45 2.99 16 4 C 0.15 7.35 5.70 86.38 0.49 7.84 16 5 N -0.56 -29.08 2.68 -713.74 -1.91 -31.00 16 6 C -0.27 -14.88 9.49 84.03 0.80 -14.08 16 7 H 0.06 3.26 7.93 -2.91 -0.02 3.24 16 8 C -0.02 -1.36 4.93 84.86 0.42 -0.94 16 9 N -0.91 -52.02 11.33 21.65 0.25 -51.77 16 10 Si 0.96 44.80 29.61 68.60 2.03 46.83 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.36 16.66 6.05 170.96 1.03 17.69 16 15 N -0.59 -25.63 2.85 -784.32 -2.23 -27.86 16 16 C 0.70 28.73 8.63 179.37 1.55 30.27 16 17 O -0.59 -27.68 16.53 -3.85 -0.06 -27.74 16 18 N -0.71 -21.38 5.88 -442.68 -2.60 -23.98 16 19 C 0.13 3.81 1.01 2.58 0.00 3.81 16 20 C -0.10 -2.10 5.09 30.45 0.16 -1.95 16 21 C -0.12 -2.55 4.95 30.63 0.15 -2.40 16 22 C -0.08 -1.61 2.71 -10.79 -0.03 -1.64 16 23 C -0.14 -2.77 9.19 71.98 0.66 -2.10 16 24 C -0.12 -3.28 4.95 30.62 0.15 -3.13 16 25 C -0.10 -2.88 5.11 30.45 0.16 -2.73 16 26 C 0.52 21.21 6.52 87.77 0.57 21.78 16 27 O -0.49 -22.02 13.84 -2.91 -0.04 -22.06 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 1.37 7.13 -2.39 -0.02 1.36 16 34 H 0.09 4.88 5.32 -2.39 -0.01 4.87 16 35 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 36 H 0.09 4.04 6.47 -2.39 -0.02 4.03 16 37 H 0.07 3.40 7.90 -2.39 -0.02 3.38 16 38 H 0.45 10.10 8.96 -92.71 -0.83 9.27 16 39 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.47 6.09 -2.39 -0.01 1.45 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.04 1.61 6.13 -2.39 -0.01 1.59 16 48 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -71.73 391.18 1.98 -69.75 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.11 Total: 28.06 kcal Atomic # 6 Polarization: 49.67 SS G_CDS: 7.81 Total: 57.48 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -6.50 Total: -134.61 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -1.47 Total: -67.51 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.73 1.98 -69.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840154846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.627 kcal (2) G-P(sol) polarization free energy of solvation -71.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds