Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00435 * 2 1 4 4 H 1.48497 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46741 * 300.00000 * 3 2 1 6 6 H 1.48495 * 109.47275 * 60.00098 * 3 2 1 7 7 C 1.37877 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00497 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99882 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.46888 * 111.00123 * 170.00147 * 10 9 7 12 12 C 1.53248 * 109.34163 * 187.25369 * 11 10 9 13 13 N 1.47074 * 108.51955 * 306.16979 * 12 11 10 14 14 C 1.34773 * 120.88083 * 230.91247 * 13 12 11 15 15 O 1.21585 * 120.00359 * 174.77605 * 14 13 12 16 16 N 1.34780 * 119.99919 * 354.77254 * 14 13 12 17 17 C 1.46507 * 119.99821 * 184.97668 * 16 14 13 18 18 C 1.53000 * 109.46700 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47013 * 180.02562 * 18 17 16 20 20 C 1.52993 * 109.47299 * 179.97438 * 19 18 17 21 21 H 1.09004 * 110.33131 * 304.21417 * 20 19 18 22 22 C 1.54491 * 110.37079 * 181.85478 * 20 19 18 23 23 C 1.54571 * 102.14716 * 225.81779 * 22 20 19 24 24 O 1.45830 * 104.44083 * 26.84933 * 23 22 20 25 25 C 1.34056 * 109.91024 * 329.39283 * 24 23 22 26 26 O 1.20828 * 125.09843 * 200.83492 * 25 24 23 27 27 C 1.47077 * 118.23950 * 51.18408 * 13 12 11 28 28 C 1.46901 * 110.99972 * 294.30412 * 10 9 7 29 29 H 0.97006 * 119.99416 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46922 * 59.99943 * 9 7 2 31 31 H 1.08997 * 109.46700 * 299.99937 * 9 7 2 32 32 H 1.08999 * 109.49998 * 67.29233 * 11 10 9 33 33 H 1.09005 * 109.51785 * 307.22101 * 11 10 9 34 34 H 1.08995 * 109.62945 * 186.45384 * 12 11 10 35 35 H 1.08995 * 109.78772 * 65.97176 * 12 11 10 36 36 H 0.96993 * 119.99654 * 4.97746 * 16 14 13 37 37 H 1.08993 * 109.47468 * 300.00253 * 17 16 14 38 38 H 1.09006 * 109.46598 * 60.00314 * 17 16 14 39 39 H 1.09001 * 109.47152 * 299.99952 * 18 17 16 40 40 H 1.08998 * 109.47206 * 60.00118 * 18 17 16 41 41 H 1.09001 * 109.46954 * 299.99867 * 19 18 17 42 42 H 1.08998 * 109.47206 * 59.99912 * 19 18 17 43 43 H 1.09002 * 110.86662 * 343.98399 * 22 20 19 44 44 H 1.09003 * 110.86899 * 107.65232 * 22 20 19 45 45 H 1.09003 * 110.44182 * 268.10723 * 23 22 20 46 46 H 1.09000 * 110.54486 * 145.64038 * 23 22 20 47 47 H 1.08997 * 109.63197 * 68.52446 * 27 13 12 48 48 H 1.08997 * 109.63063 * 189.10481 * 27 13 12 49 49 H 1.09005 * 109.49288 * 292.70303 * 28 10 9 50 50 H 1.08999 * 109.49471 * 52.78346 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2053 -3.6158 -0.0005 11 6 1.5209 -4.8935 0.2376 12 6 2.5634 -6.0033 0.4104 13 7 3.4612 -5.9864 -0.7544 14 6 3.7157 -7.1136 -1.4480 15 8 4.3832 -7.0652 -2.4631 16 7 3.2303 -8.2945 -1.0164 17 6 3.5963 -9.5335 -1.7074 18 6 2.9152 -10.7198 -1.0221 19 6 3.2979 -12.0138 -1.7433 20 6 2.6174 -13.2002 -1.0576 21 1 2.8736 -13.2234 0.0016 22 6 3.0270 -14.5237 -1.7414 23 6 1.6694 -15.2483 -1.8869 24 8 0.6874 -14.1719 -1.9482 25 6 1.1166 -13.1211 -1.2349 26 8 0.4110 -12.2425 -0.7989 27 6 4.0787 -4.7080 -1.1386 28 6 2.9765 -3.6492 -1.2504 29 1 -0.4849 0.8401 -0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8897 32 1 0.8792 -5.1264 -0.6122 33 1 0.9154 -4.8195 1.1410 34 1 2.0627 -6.9695 0.4729 35 1 3.1395 -5.8301 1.3192 36 1 2.6387 -8.3241 -0.2484 37 1 3.2720 -9.4794 -2.7466 38 1 4.6779 -9.6640 -1.6706 39 1 3.2393 -10.7741 0.0172 40 1 1.8338 -10.5890 -1.0592 41 1 2.9742 -11.9598 -2.7827 42 1 4.3794 -12.1444 -1.7058 43 1 3.4728 -14.3345 -2.7179 44 1 3.7057 -15.0944 -1.1075 45 1 1.4829 -15.8848 -1.0219 46 1 1.6464 -15.8372 -2.8038 47 1 4.8000 -4.4068 -0.3790 48 1 4.5798 -4.8178 -2.1003 49 1 2.3146 -3.8994 -2.0796 50 1 3.4270 -2.6724 -1.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873170910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -104.071511 kcal Electronic energy + Delta-G solvation = -29239.843377 eV Core-core repulsion = 25074.253806 eV Total energy + Delta-G solvation = -4165.589570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57574 -40.16990 -37.95203 -37.71785 -36.43183 -34.56578 -34.31059 -32.41873 -31.83617 -30.61001 -28.93586 -27.94180 -25.72256 -24.99574 -23.17626 -23.12743 -22.19597 -21.93663 -21.01297 -20.58964 -19.17310 -18.01789 -17.85851 -17.39274 -16.62132 -16.36864 -16.05893 -15.97197 -15.20637 -14.86682 -14.65011 -14.42193 -14.38290 -14.26731 -14.07382 -13.92407 -13.70034 -13.47757 -13.30147 -13.09237 -12.77198 -12.54064 -12.23735 -12.04764 -11.91266 -11.80232 -11.53781 -11.33534 -11.25849 -11.10894 -11.10321 -10.81837 -10.70018 -10.56847 -10.47635 -10.35020 -9.95481 -9.81884 -9.23851 -9.11309 -8.46302 -8.28284 -7.29054 -6.04003 -4.05616 1.59788 2.71552 2.76654 3.31258 3.34817 3.35676 3.38757 3.43509 3.62579 3.84225 4.00949 4.16787 4.40412 4.41973 4.49107 4.69434 4.76696 4.81659 4.90671 4.97273 5.03048 5.16355 5.24034 5.26597 5.31260 5.33927 5.40493 5.45973 5.51637 5.69205 5.80795 5.85402 5.88125 6.00097 6.07606 6.24173 6.24295 6.45638 6.49598 6.59797 6.73730 7.01539 7.10279 7.25283 7.31892 7.77213 8.03256 8.05777 8.15612 8.50515 8.72409 9.02045 9.58917 11.06890 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027008 B = 0.001732 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.476726 B =16162.416595 C =16885.895383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.534 5.534 11 C 0.040 3.960 12 C 0.119 3.881 13 N -0.625 5.625 14 C 0.707 3.293 15 O -0.598 6.598 16 N -0.751 5.751 17 C 0.142 3.858 18 C -0.144 4.144 19 C -0.098 4.098 20 C -0.153 4.153 21 H 0.118 0.882 22 C -0.154 4.154 23 C 0.052 3.948 24 O -0.348 6.348 25 C 0.482 3.518 26 O -0.445 6.445 27 C 0.133 3.867 28 C 0.050 3.950 29 H 0.261 0.739 30 H -0.009 1.009 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.396 0.604 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.024 0.976 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -33.117 -1.096 33.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.362 5.362 14 C 0.409 3.591 15 O -0.477 6.477 16 N -0.409 5.409 17 C 0.017 3.983 18 C -0.181 4.181 19 C -0.136 4.136 20 C -0.173 4.173 21 H 0.136 0.864 22 C -0.191 4.191 23 C -0.022 4.022 24 O -0.265 6.265 25 C 0.322 3.678 26 O -0.327 6.327 27 C 0.010 3.990 28 C -0.079 4.079 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.043 0.957 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.549 -32.481 -1.363 33.374 hybrid contribution -0.536 0.710 -0.144 0.901 sum 7.013 -31.771 -1.508 32.571 Atomic orbital electron populations 1.69973 1.06091 1.26703 1.50986 1.24999 0.94871 0.99380 0.95394 0.86432 0.80088 0.83363 0.77484 1.19602 1.21131 1.21037 1.21187 0.93554 0.89846 1.50077 0.91695 1.19738 0.90038 0.87254 0.96191 1.62081 1.27852 1.02435 1.33589 1.22377 0.94746 0.90928 1.00882 1.21757 0.91814 0.98269 0.88658 1.47402 1.49545 1.07850 1.31444 1.15823 0.80128 0.80337 0.82851 1.90877 1.45671 1.85684 1.25462 1.45253 1.54175 1.05423 1.36078 1.21092 0.99265 0.81697 0.96246 1.21960 1.02840 0.93256 1.00086 1.21363 1.00963 0.91645 0.99592 1.22608 0.93542 0.97331 1.03806 0.86416 1.23087 0.97696 0.95146 1.03211 1.24153 0.85416 0.88009 1.04624 1.87057 1.47625 1.26233 1.65574 1.23135 0.90102 0.80560 0.74019 1.90732 1.64017 1.34504 1.43467 1.21736 0.95451 0.80608 1.01218 1.22368 0.95284 0.99193 0.91045 0.92964 0.99093 0.95050 0.95517 0.90088 0.91270 0.90688 0.76765 0.91816 0.91858 0.90926 0.89631 0.90793 0.89698 0.88753 0.88262 0.89567 0.87013 0.91201 0.89336 0.95741 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 8 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 9 C 0.19 4.98 4.72 -4.97 -0.02 4.96 16 10 N -0.53 -11.34 4.62 -235.76 -1.09 -12.43 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.66 6.53 -3.60 -0.02 1.64 16 13 N -0.63 -10.03 3.01 -178.20 -0.54 -10.57 16 14 C 0.71 11.52 8.30 -86.92 -0.72 10.80 16 15 O -0.60 -11.75 15.81 5.29 0.08 -11.67 16 16 N -0.75 -9.19 5.46 -65.22 -0.36 -9.55 16 17 C 0.14 1.42 5.68 -4.04 -0.02 1.40 16 18 C -0.14 -1.05 5.10 -26.73 -0.14 -1.18 16 19 C -0.10 -0.48 4.57 -26.74 -0.12 -0.61 16 20 C -0.15 -0.66 3.03 -90.68 -0.27 -0.93 16 21 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 22 C -0.15 -0.24 6.79 -25.12 -0.17 -0.41 16 23 C 0.05 0.13 7.90 37.98 0.30 0.43 16 24 O -0.35 -2.67 11.05 -38.46 -0.43 -3.10 16 25 C 0.48 4.05 7.75 36.32 0.28 4.33 16 26 O -0.44 -5.46 16.02 -18.41 -0.29 -5.76 16 27 C 0.13 2.28 6.61 -3.60 -0.02 2.26 16 28 C 0.05 1.00 5.46 -3.70 -0.02 0.98 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.34 7.99 -51.93 -0.41 0.93 16 34 H 0.07 0.76 5.75 -51.93 -0.30 0.46 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 4.07 6.01 -40.82 -0.25 3.83 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.80 6.14 -51.93 -0.32 0.48 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.10 7.81 -51.93 -0.41 -0.31 16 44 H 0.10 -0.03 8.14 -51.93 -0.42 -0.46 16 45 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 46 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.09 1.54 7.04 -51.93 -0.37 1.17 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -36.22 396.84 -10.52 -46.75 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.24 Total: -1.69 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -1.37 Total: 11.39 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -1.25 Total: -58.48 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.64 Total: -20.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.22 -10.52 -46.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873170910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.323 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds