Wall clock time and date at job start Sat Apr 11 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00435 * 2 1 4 4 H 1.48497 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46741 * 300.00000 * 3 2 1 6 6 H 1.48495 * 109.47275 * 60.00098 * 3 2 1 7 7 C 1.37877 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00497 * 179.97438 * 7 2 1 9 9 C 1.50709 * 119.99882 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.46888 * 111.00123 * 170.00147 * 10 9 7 12 12 C 1.53248 * 109.34163 * 187.25369 * 11 10 9 13 13 N 1.47074 * 108.51955 * 306.16979 * 12 11 10 14 14 C 1.34773 * 120.88083 * 230.91247 * 13 12 11 15 15 O 1.21585 * 120.00359 * 174.77605 * 14 13 12 16 16 N 1.34780 * 119.99919 * 354.77254 * 14 13 12 17 17 C 1.46507 * 119.99821 * 184.97668 * 16 14 13 18 18 C 1.53000 * 109.46700 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47013 * 180.02562 * 18 17 16 20 20 C 1.52993 * 109.47299 * 179.97438 * 19 18 17 21 21 H 1.09004 * 110.33131 * 304.21417 * 20 19 18 22 22 C 1.54491 * 110.37079 * 181.85478 * 20 19 18 23 23 C 1.54571 * 102.14716 * 225.81779 * 22 20 19 24 24 O 1.45830 * 104.44083 * 26.84933 * 23 22 20 25 25 C 1.34056 * 109.91024 * 329.39283 * 24 23 22 26 26 O 1.20828 * 125.09843 * 200.83492 * 25 24 23 27 27 C 1.47077 * 118.23950 * 51.18408 * 13 12 11 28 28 C 1.46901 * 110.99972 * 294.30412 * 10 9 7 29 29 H 0.97006 * 119.99416 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46922 * 59.99943 * 9 7 2 31 31 H 1.08997 * 109.46700 * 299.99937 * 9 7 2 32 32 H 1.08999 * 109.49998 * 67.29233 * 11 10 9 33 33 H 1.09005 * 109.51785 * 307.22101 * 11 10 9 34 34 H 1.08995 * 109.62945 * 186.45384 * 12 11 10 35 35 H 1.08995 * 109.78772 * 65.97176 * 12 11 10 36 36 H 0.96993 * 119.99654 * 4.97746 * 16 14 13 37 37 H 1.08993 * 109.47468 * 300.00253 * 17 16 14 38 38 H 1.09006 * 109.46598 * 60.00314 * 17 16 14 39 39 H 1.09001 * 109.47152 * 299.99952 * 18 17 16 40 40 H 1.08998 * 109.47206 * 60.00118 * 18 17 16 41 41 H 1.09001 * 109.46954 * 299.99867 * 19 18 17 42 42 H 1.08998 * 109.47206 * 59.99912 * 19 18 17 43 43 H 1.09002 * 110.86662 * 343.98399 * 22 20 19 44 44 H 1.09003 * 110.86899 * 107.65232 * 22 20 19 45 45 H 1.09003 * 110.44182 * 268.10723 * 23 22 20 46 46 H 1.09000 * 110.54486 * 145.64038 * 23 22 20 47 47 H 1.08997 * 109.63197 * 68.52446 * 27 13 12 48 48 H 1.08997 * 109.63063 * 189.10481 * 27 13 12 49 49 H 1.09005 * 109.49288 * 292.70303 * 28 10 9 50 50 H 1.08999 * 109.49471 * 52.78346 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2053 -3.6158 -0.0005 11 6 1.5209 -4.8935 0.2376 12 6 2.5634 -6.0033 0.4104 13 7 3.4612 -5.9864 -0.7544 14 6 3.7157 -7.1136 -1.4480 15 8 4.3832 -7.0652 -2.4631 16 7 3.2303 -8.2945 -1.0164 17 6 3.5963 -9.5335 -1.7074 18 6 2.9152 -10.7198 -1.0221 19 6 3.2979 -12.0138 -1.7433 20 6 2.6174 -13.2002 -1.0576 21 1 2.8736 -13.2234 0.0016 22 6 3.0270 -14.5237 -1.7414 23 6 1.6694 -15.2483 -1.8869 24 8 0.6874 -14.1719 -1.9482 25 6 1.1166 -13.1211 -1.2349 26 8 0.4110 -12.2425 -0.7989 27 6 4.0787 -4.7080 -1.1386 28 6 2.9765 -3.6492 -1.2504 29 1 -0.4849 0.8401 -0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8897 32 1 0.8792 -5.1264 -0.6122 33 1 0.9154 -4.8195 1.1410 34 1 2.0627 -6.9695 0.4729 35 1 3.1395 -5.8301 1.3192 36 1 2.6387 -8.3241 -0.2484 37 1 3.2720 -9.4794 -2.7466 38 1 4.6779 -9.6640 -1.6706 39 1 3.2393 -10.7741 0.0172 40 1 1.8338 -10.5890 -1.0592 41 1 2.9742 -11.9598 -2.7827 42 1 4.3794 -12.1444 -1.7058 43 1 3.4728 -14.3345 -2.7179 44 1 3.7057 -15.0944 -1.1075 45 1 1.4829 -15.8848 -1.0219 46 1 1.6464 -15.8372 -2.8038 47 1 4.8000 -4.4068 -0.3790 48 1 4.5798 -4.8178 -2.1003 49 1 2.3146 -3.8994 -2.0796 50 1 3.4270 -2.6724 -1.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873170910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:28 Heat of formation + Delta-G solvation = -129.695929 kcal Electronic energy + Delta-G solvation = -29240.954535 eV Core-core repulsion = 25074.253806 eV Total energy + Delta-G solvation = -4166.700729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.04636 -41.45232 -39.20310 -38.55460 -37.20602 -36.00019 -35.30459 -34.37008 -32.60558 -31.86594 -30.11314 -29.06078 -27.26577 -25.92283 -24.54322 -23.91777 -23.44764 -22.69694 -22.18971 -21.38889 -20.43291 -19.11298 -18.50630 -18.41167 -17.94672 -17.47069 -17.01671 -16.84202 -16.70791 -16.08360 -16.00480 -15.70361 -15.42344 -15.35872 -15.05830 -14.92596 -14.80145 -14.56625 -14.24754 -14.03876 -13.86107 -13.56677 -13.31845 -13.10087 -12.99555 -12.75914 -12.60689 -12.55338 -12.36997 -12.30477 -12.27911 -12.18715 -12.00714 -11.84959 -11.74670 -11.40949 -11.35650 -11.16071 -10.89900 -10.63088 -10.26868 -9.60811 -9.06780 -8.21319 -6.31296 1.03363 1.42050 1.42494 1.56175 1.59602 2.06693 2.33977 2.40457 2.84159 2.99265 3.10947 3.20982 3.42782 3.59600 3.91928 3.97322 4.02065 4.05245 4.08529 4.15723 4.23928 4.27421 4.41143 4.44232 4.48873 4.56717 4.66589 4.69663 4.72604 4.74029 4.83017 4.90706 4.93302 4.99055 5.00368 5.09499 5.15638 5.20991 5.23191 5.27694 5.43095 5.50927 5.63488 5.82891 5.90519 6.02137 6.24027 6.44695 6.55867 6.84455 6.90261 7.38579 7.48484 8.90143 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027008 B = 0.001732 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.476726 B =16162.416595 C =16885.895383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.207 3.793 10 N -0.535 5.535 11 C 0.036 3.964 12 C 0.128 3.872 13 N -0.630 5.630 14 C 0.703 3.297 15 O -0.635 6.635 16 N -0.737 5.737 17 C 0.141 3.859 18 C -0.133 4.133 19 C -0.096 4.096 20 C -0.144 4.144 21 H 0.135 0.865 22 C -0.142 4.142 23 C 0.043 3.957 24 O -0.378 6.378 25 C 0.474 3.526 26 O -0.499 6.499 27 C 0.145 3.855 28 C 0.056 3.944 29 H 0.264 0.736 30 H -0.044 1.044 31 H 0.011 0.989 32 H 0.014 0.986 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.407 0.593 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.130 0.870 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.005 0.995 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -35.296 -0.125 36.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.260 5.260 11 C -0.093 4.093 12 C 0.005 3.995 13 N -0.366 5.366 14 C 0.405 3.595 15 O -0.517 6.517 16 N -0.395 5.395 17 C 0.017 3.983 18 C -0.171 4.171 19 C -0.134 4.134 20 C -0.163 4.163 21 H 0.153 0.847 22 C -0.180 4.180 23 C -0.030 4.030 24 O -0.295 6.295 25 C 0.317 3.683 26 O -0.385 6.385 27 C 0.021 3.979 28 C -0.073 4.073 29 H 0.073 0.927 30 H -0.026 1.026 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.245 0.755 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.147 0.853 45 H 0.120 0.880 46 H 0.148 0.852 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.024 0.976 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.940 -34.740 -0.377 36.136 hybrid contribution -1.344 1.263 -0.495 1.910 sum 8.596 -33.476 -0.872 34.573 Atomic orbital electron populations 1.70100 1.07797 1.27831 1.51861 1.25932 0.95734 1.03290 0.94803 0.85306 0.79086 0.78476 0.77580 1.18469 1.20752 1.20367 1.21500 0.93796 0.90863 1.49897 0.91461 1.19402 0.90082 0.88931 0.93522 1.62016 1.26942 1.02938 1.34058 1.22531 0.95825 0.90204 1.00725 1.21826 0.90849 0.98454 0.88391 1.47423 1.49774 1.07476 1.31960 1.15995 0.80028 0.81137 0.82387 1.90850 1.47440 1.86309 1.27071 1.45235 1.53327 1.04862 1.36104 1.21246 0.99904 0.81609 0.95565 1.21881 1.01038 0.93194 1.01007 1.21392 1.02498 0.90596 0.98869 1.22623 0.90076 0.98507 1.05126 0.84714 1.23145 0.97446 0.93411 1.03954 1.24566 0.84953 0.87036 1.06456 1.87009 1.50073 1.27242 1.65151 1.23909 0.91775 0.79805 0.72831 1.90687 1.65667 1.36375 1.45808 1.21512 0.94299 0.80375 1.01684 1.22301 0.95523 0.99651 0.89846 0.92733 1.02594 0.97048 0.96816 0.89149 0.87711 0.89011 0.75483 0.93495 0.91190 0.89342 0.91897 0.91563 0.87100 0.87968 0.85346 0.87962 0.85199 0.89877 0.89598 0.97648 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.52 -29.56 8.41 25.60 0.22 -29.35 16 8 H 0.07 3.70 7.12 -2.91 -0.02 3.68 16 9 C 0.21 11.10 4.72 85.56 0.40 11.50 16 10 N -0.53 -23.03 4.62 -899.80 -4.16 -27.18 16 11 C 0.04 1.26 5.62 86.39 0.49 1.74 16 12 C 0.13 3.32 6.53 86.35 0.56 3.88 16 13 N -0.63 -19.43 3.01 -835.96 -2.52 -21.94 16 14 C 0.70 22.14 8.30 179.05 1.49 23.62 16 15 O -0.63 -24.72 15.81 -3.98 -0.06 -24.79 16 16 N -0.74 -16.87 5.46 -478.52 -2.61 -19.48 16 17 C 0.14 2.64 5.68 86.38 0.49 3.13 16 18 C -0.13 -1.73 5.10 30.59 0.16 -1.57 16 19 C -0.10 -0.73 4.57 30.59 0.14 -0.59 16 20 C -0.14 -0.88 3.03 -10.83 -0.03 -0.92 16 21 H 0.14 0.41 8.14 -2.38 -0.02 0.39 16 22 C -0.14 0.06 6.79 31.64 0.21 0.28 16 23 C 0.04 0.11 7.90 72.52 0.57 0.68 16 24 O -0.38 -5.64 11.05 -50.09 -0.55 -6.19 16 25 C 0.47 7.84 7.75 71.44 0.55 8.39 16 26 O -0.50 -12.76 16.02 21.63 0.35 -12.42 16 27 C 0.14 4.90 6.61 86.35 0.57 5.47 16 28 C 0.06 2.28 5.46 86.38 0.47 2.75 16 29 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 30 H -0.04 -2.60 8.12 -2.39 -0.02 -2.62 16 31 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 2.96 7.99 -2.38 -0.02 2.94 16 34 H 0.10 1.99 5.75 -2.39 -0.01 1.98 16 35 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.41 7.42 6.01 -92.71 -0.56 6.87 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 1.16 6.14 -2.39 -0.01 1.15 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 42 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.10 -0.16 7.81 -2.39 -0.02 -0.18 16 44 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 45 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.13 -0.17 8.14 -2.39 -0.02 -0.18 16 47 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.09 2.98 7.04 -2.39 -0.02 2.97 16 49 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 50 H 0.08 3.56 6.67 -2.39 -0.02 3.54 16 Total: -1.00 -82.59 396.84 -0.11 -82.70 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.38 Total: 9.73 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: 6.76 Total: 29.51 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -9.00 Total: -125.04 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.27 Total: -43.39 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -82.59 -0.11 -82.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873170910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.999 kcal (2) G-P(sol) polarization free energy of solvation -82.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds