Wall clock time and date at job start Sat Apr 11 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48506 * 109.46596 * 240.00240 * 3 2 1 5 5 H 1.48494 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47068 * 120.00361 * 3 2 1 7 7 C 1.37881 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00006 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00045 * 90.00113 * 10 9 7 12 12 C 1.53006 * 109.47063 * 270.00378 * 11 10 9 13 13 N 1.46898 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.47015 * 110.99642 * 293.62955 * 13 12 11 15 15 C 1.53098 * 109.25723 * 177.60943 * 14 13 12 16 16 O 1.43023 * 109.25952 * 56.85124 * 15 14 13 17 17 C 1.43014 * 113.73189 * 301.32868 * 16 15 14 18 18 C 1.47016 * 110.99994 * 169.99953 * 13 12 11 19 19 C 1.34778 * 120.00158 * 269.99842 * 10 9 7 20 20 O 1.21281 * 120.00159 * 179.97438 * 19 10 9 21 21 C 1.50697 * 119.99786 * 0.02562 * 19 10 9 22 22 C 1.53002 * 109.47120 * 179.97438 * 21 19 10 23 23 H 1.09005 * 110.43166 * 52.45954 * 22 21 19 24 24 C 1.54626 * 110.48736 * 174.99771 * 22 21 19 25 25 C 1.54476 * 101.76529 * 93.88641 * 24 22 21 26 26 N 1.46764 * 105.47178 * 25.41198 * 25 24 22 27 27 C 1.34417 * 111.30274 * 342.98724 * 26 25 24 28 28 O 1.21282 * 124.94261 * 180.43926 * 27 26 25 29 29 H 0.97001 * 120.00262 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46914 * 59.99948 * 9 7 2 31 31 H 1.08996 * 109.47256 * 300.00370 * 9 7 2 32 32 H 1.08994 * 109.47641 * 150.00001 * 11 10 9 33 33 H 1.09009 * 109.47090 * 29.99868 * 11 10 9 34 34 H 1.08994 * 109.47199 * 59.99353 * 12 11 10 35 35 H 1.08996 * 109.46529 * 299.99747 * 12 11 10 36 36 H 1.08999 * 109.50673 * 297.54208 * 14 13 12 37 37 H 1.09004 * 109.50788 * 57.67624 * 14 13 12 38 38 H 1.08997 * 109.51060 * 296.91507 * 15 14 13 39 39 H 1.09000 * 109.51173 * 176.78603 * 15 14 13 40 40 H 1.08999 * 109.51224 * 298.73604 * 17 16 15 41 41 H 1.09000 * 109.50636 * 178.60446 * 17 16 15 42 42 H 1.09000 * 109.50136 * 302.32362 * 18 13 12 43 43 H 1.08996 * 109.50988 * 62.41201 * 18 13 12 44 44 H 1.09000 * 109.47148 * 299.99398 * 21 19 10 45 45 H 1.09001 * 109.47480 * 60.00196 * 21 19 10 46 46 H 1.08999 * 110.97051 * 212.00230 * 24 22 21 47 47 H 1.08997 * 110.97249 * 335.75974 * 24 22 21 48 48 H 1.08993 * 110.25076 * 144.41660 * 25 24 22 49 49 H 1.09007 * 110.24265 * 266.41671 * 25 24 22 50 50 H 0.97005 * 124.34900 * 162.98754 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6799 -4.1701 1.2663 12 6 3.9424 -3.4266 1.7074 13 7 4.4210 -3.9859 2.9787 14 6 3.4673 -3.7170 4.0647 15 6 3.9748 -4.3667 5.3548 16 8 5.2840 -3.8717 5.6489 17 6 6.2384 -4.1170 4.6125 18 6 5.7539 -3.4648 3.3150 19 6 2.6400 -4.1244 -1.1695 20 8 3.4284 -5.0460 -1.1706 21 6 2.1497 -3.5508 -2.4740 22 6 2.7953 -4.3057 -3.6377 23 1 2.6478 -5.3796 -3.5232 24 6 2.2145 -3.8204 -4.9861 25 6 3.2342 -2.7348 -5.3959 26 7 4.4868 -3.1008 -4.7244 27 6 4.2692 -3.9776 -3.7291 28 8 5.1293 -4.4382 -3.0086 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.9082 -5.2278 1.1354 33 1 1.9071 -4.0565 2.0267 34 1 3.7141 -2.3689 1.8383 35 1 4.7151 -3.5402 0.9471 36 1 3.3761 -2.6407 4.2108 37 1 2.4939 -4.1337 3.8059 38 1 4.0151 -5.4483 5.2262 39 1 3.3004 -4.1221 6.1754 40 1 6.3446 -5.1914 4.4622 41 1 7.2011 -3.6918 4.8961 42 1 6.4496 -3.6973 2.5087 43 1 5.6993 -2.3844 3.4483 44 1 1.0660 -3.6524 -2.5311 45 1 2.4194 -2.4962 -2.5313 46 1 2.1927 -4.6302 -5.7155 47 1 1.2214 -3.3920 -4.8516 48 1 3.3717 -2.7352 -6.4771 49 1 2.8977 -1.7545 -5.0581 50 1 5.3597 -2.7544 -4.9676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878947388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:39 Heat of formation + Delta-G solvation = -108.811072 kcal Electronic energy + Delta-G solvation = -31319.131979 eV Core-core repulsion = 27153.336886 eV Total energy + Delta-G solvation = -4165.795093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.32629 -39.45342 -38.62242 -36.06204 -35.95506 -34.67700 -32.71545 -32.42666 -31.11439 -29.89206 -28.56071 -27.27593 -26.32637 -24.96927 -23.90265 -22.89596 -21.89854 -21.57803 -20.18454 -19.76846 -18.28964 -17.13114 -16.87942 -16.33410 -16.13831 -15.98152 -15.79081 -15.29586 -15.09206 -14.95968 -14.77500 -14.49485 -14.30569 -13.97654 -13.57676 -13.44393 -13.26397 -13.04054 -12.60256 -12.50944 -12.32950 -12.17995 -12.10364 -11.86144 -11.57937 -11.48646 -11.28431 -11.23145 -11.08619 -11.01038 -10.83982 -10.64383 -10.55727 -10.41909 -9.98063 -9.79556 -9.57072 -9.33948 -8.91019 -8.87510 -8.59845 -8.13637 -7.67869 -6.24256 -4.31289 2.99972 3.17434 3.23178 3.25865 3.46843 3.58278 3.77004 3.92932 4.21566 4.29882 4.56211 4.65091 4.88414 4.98843 5.07948 5.13489 5.15369 5.17788 5.25760 5.37819 5.38905 5.51437 5.56027 5.62653 5.66642 5.72520 5.75656 5.82317 5.92360 5.92812 5.98385 5.99054 6.04626 6.09189 6.16188 6.39123 6.43468 6.58286 6.74883 7.06998 7.12131 7.13198 7.22773 7.24482 7.25279 7.57589 7.71790 8.01119 8.36767 8.63341 8.75352 9.10962 9.37179 10.81961 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.004186 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.341624 B = 6687.104481 C = 8591.601682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.239 3.761 10 N -0.601 5.601 11 C 0.133 3.867 12 C 0.043 3.957 13 N -0.535 5.535 14 C 0.013 3.987 15 C 0.065 3.935 16 O -0.390 6.390 17 C 0.066 3.934 18 C 0.018 3.982 19 C 0.508 3.492 20 O -0.542 6.542 21 C -0.118 4.118 22 C -0.107 4.107 23 H 0.108 0.892 24 C -0.132 4.132 25 C 0.102 3.898 26 N -0.743 5.743 27 C 0.522 3.478 28 O -0.503 6.503 29 H 0.266 0.734 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.073 0.927 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -5.607 -3.336 7.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.077 0.923 9 C 0.119 3.881 10 N -0.333 5.333 11 C 0.009 3.991 12 C -0.085 4.085 13 N -0.260 5.260 14 C -0.115 4.115 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.011 4.011 18 C -0.110 4.110 19 C 0.295 3.705 20 O -0.421 6.421 21 C -0.158 4.158 22 C -0.129 4.129 23 H 0.126 0.874 24 C -0.170 4.170 25 C -0.023 4.023 26 N -0.400 5.400 27 C 0.307 3.693 28 O -0.376 6.376 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.809 -6.682 -2.777 8.178 hybrid contribution 0.530 2.334 -0.364 2.421 sum 4.339 -4.348 -3.141 6.899 Atomic orbital electron populations 1.69901 1.05894 1.27365 1.49695 1.24909 0.94801 0.99072 0.94816 0.86656 0.79648 0.82942 0.78843 1.20149 1.21053 1.20256 1.21474 0.93459 0.90541 1.51949 0.92301 1.19412 0.87452 0.82762 0.98518 1.48151 1.45406 1.35446 1.04257 1.21086 0.94551 0.97858 0.85573 1.22546 0.98217 0.97994 0.89736 1.62189 1.01958 1.58999 1.02899 1.22841 0.97085 0.99815 0.91758 1.22672 0.84059 0.98019 0.96439 1.87947 1.19659 1.80980 1.42245 1.22641 0.91884 0.99992 0.86574 1.22740 0.91972 0.97928 0.98384 1.20385 0.81304 0.83057 0.85724 1.90724 1.34207 1.29594 1.87537 1.21498 1.01640 1.01781 0.90912 1.21743 0.93153 1.02997 0.95056 0.87419 1.22702 0.99484 0.98545 0.96228 1.22021 0.84249 0.98821 0.97205 1.46264 1.09894 1.47546 1.36339 1.20768 0.91237 0.78186 0.79137 1.90786 1.50114 1.53492 1.43163 0.92466 0.94378 0.94843 0.90487 0.91525 0.92887 0.90778 0.93690 0.89308 0.92411 0.88696 0.92363 0.88806 0.89757 0.94036 0.88180 0.87790 0.90086 0.88790 0.90763 0.90919 0.75759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 13.29 55.43 0.74 -22.83 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -13.38 8.82 -34.44 -0.30 -13.68 16 8 H 0.06 1.53 7.42 -52.49 -0.39 1.14 16 9 C 0.24 5.41 5.01 -5.19 -0.03 5.39 16 10 N -0.60 -12.50 2.46 -175.06 -0.43 -12.93 16 11 C 0.13 2.56 5.39 -4.04 -0.02 2.53 16 12 C 0.04 0.83 5.28 -3.82 -0.02 0.81 16 13 N -0.53 -8.77 4.73 -234.31 -1.11 -9.88 16 14 C 0.01 0.20 5.44 -3.71 -0.02 0.18 16 15 C 0.07 0.83 7.01 37.21 0.26 1.09 16 16 O -0.39 -5.59 10.83 -35.23 -0.38 -5.97 16 17 C 0.07 0.85 7.01 37.21 0.26 1.11 16 18 C 0.02 0.27 5.64 -3.71 -0.02 0.25 16 19 C 0.51 10.55 7.48 -10.99 -0.08 10.47 16 20 O -0.54 -12.63 13.57 -15.02 -0.20 -12.84 16 21 C -0.12 -2.03 3.66 -27.88 -0.10 -2.13 16 22 C -0.11 -1.60 2.54 -90.63 -0.23 -1.83 16 23 H 0.11 1.67 7.90 -51.93 -0.41 1.26 16 24 C -0.13 -1.34 6.71 -25.10 -0.17 -1.51 16 25 C 0.10 1.01 7.78 -3.12 -0.02 0.99 16 26 N -0.74 -9.73 6.24 -59.21 -0.37 -10.10 16 27 C 0.52 9.10 7.43 -10.86 -0.08 9.01 16 28 O -0.50 -11.24 16.21 -15.02 -0.24 -11.49 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.04 0.87 6.44 -51.93 -0.33 0.53 16 31 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 32 H 0.08 1.52 7.42 -51.93 -0.39 1.13 16 33 H 0.07 1.19 6.27 -51.92 -0.33 0.87 16 34 H 0.05 1.12 7.24 -51.93 -0.38 0.74 16 35 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.25 6.38 -51.93 -0.33 0.92 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.10 1.53 7.36 -51.93 -0.38 1.14 16 45 H 0.10 1.93 7.98 -51.93 -0.41 1.51 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 50 H 0.40 4.64 8.96 -40.82 -0.37 4.27 16 LS Contribution 395.69 15.07 5.96 5.96 Total: -1.00 -32.64 395.69 -10.04 -42.68 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.31 Total: 7.90 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -0.68 Total: 14.29 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -1.17 Total: -55.73 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.83 Total: -30.29 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.64 -10.04 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878947388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.128 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds