Wall clock time and date at job start Sat Apr 11 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48506 * 109.46596 * 240.00240 * 3 2 1 5 5 H 1.48494 * 109.47277 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47068 * 120.00361 * 3 2 1 7 7 C 1.37881 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99770 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00006 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00045 * 90.00113 * 10 9 7 12 12 C 1.53006 * 109.47063 * 270.00378 * 11 10 9 13 13 N 1.46898 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.47015 * 110.99642 * 293.62955 * 13 12 11 15 15 C 1.53098 * 109.25723 * 177.60943 * 14 13 12 16 16 O 1.43023 * 109.25952 * 56.85124 * 15 14 13 17 17 C 1.43014 * 113.73189 * 301.32868 * 16 15 14 18 18 C 1.47016 * 110.99994 * 169.99953 * 13 12 11 19 19 C 1.34778 * 120.00158 * 269.99842 * 10 9 7 20 20 O 1.21281 * 120.00159 * 179.97438 * 19 10 9 21 21 C 1.50697 * 119.99786 * 0.02562 * 19 10 9 22 22 C 1.53002 * 109.47120 * 179.97438 * 21 19 10 23 23 H 1.09005 * 110.43166 * 52.45954 * 22 21 19 24 24 C 1.54626 * 110.48736 * 174.99771 * 22 21 19 25 25 C 1.54476 * 101.76529 * 93.88641 * 24 22 21 26 26 N 1.46764 * 105.47178 * 25.41198 * 25 24 22 27 27 C 1.34417 * 111.30274 * 342.98724 * 26 25 24 28 28 O 1.21282 * 124.94261 * 180.43926 * 27 26 25 29 29 H 0.97001 * 120.00262 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46914 * 59.99948 * 9 7 2 31 31 H 1.08996 * 109.47256 * 300.00370 * 9 7 2 32 32 H 1.08994 * 109.47641 * 150.00001 * 11 10 9 33 33 H 1.09009 * 109.47090 * 29.99868 * 11 10 9 34 34 H 1.08994 * 109.47199 * 59.99353 * 12 11 10 35 35 H 1.08996 * 109.46529 * 299.99747 * 12 11 10 36 36 H 1.08999 * 109.50673 * 297.54208 * 14 13 12 37 37 H 1.09004 * 109.50788 * 57.67624 * 14 13 12 38 38 H 1.08997 * 109.51060 * 296.91507 * 15 14 13 39 39 H 1.09000 * 109.51173 * 176.78603 * 15 14 13 40 40 H 1.08999 * 109.51224 * 298.73604 * 17 16 15 41 41 H 1.09000 * 109.50636 * 178.60446 * 17 16 15 42 42 H 1.09000 * 109.50136 * 302.32362 * 18 13 12 43 43 H 1.08996 * 109.50988 * 62.41201 * 18 13 12 44 44 H 1.09000 * 109.47148 * 299.99398 * 21 19 10 45 45 H 1.09001 * 109.47480 * 60.00196 * 21 19 10 46 46 H 1.08999 * 110.97051 * 212.00230 * 24 22 21 47 47 H 1.08997 * 110.97249 * 335.75974 * 24 22 21 48 48 H 1.08993 * 110.25076 * 144.41660 * 25 24 22 49 49 H 1.09007 * 110.24265 * 266.41671 * 25 24 22 50 50 H 0.97005 * 124.34900 * 162.98754 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.6799 -4.1701 1.2663 12 6 3.9424 -3.4266 1.7074 13 7 4.4210 -3.9859 2.9787 14 6 3.4673 -3.7170 4.0647 15 6 3.9748 -4.3667 5.3548 16 8 5.2840 -3.8717 5.6489 17 6 6.2384 -4.1170 4.6125 18 6 5.7539 -3.4648 3.3150 19 6 2.6400 -4.1244 -1.1695 20 8 3.4284 -5.0460 -1.1706 21 6 2.1497 -3.5508 -2.4740 22 6 2.7953 -4.3057 -3.6377 23 1 2.6478 -5.3796 -3.5232 24 6 2.2145 -3.8204 -4.9861 25 6 3.2342 -2.7348 -5.3959 26 7 4.4868 -3.1008 -4.7244 27 6 4.2692 -3.9776 -3.7291 28 8 5.1293 -4.4382 -3.0086 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.9082 -5.2278 1.1354 33 1 1.9071 -4.0565 2.0267 34 1 3.7141 -2.3689 1.8383 35 1 4.7151 -3.5402 0.9471 36 1 3.3761 -2.6407 4.2108 37 1 2.4939 -4.1337 3.8059 38 1 4.0151 -5.4483 5.2262 39 1 3.3004 -4.1221 6.1754 40 1 6.3446 -5.1914 4.4622 41 1 7.2011 -3.6918 4.8961 42 1 6.4496 -3.6973 2.5087 43 1 5.6993 -2.3844 3.4483 44 1 1.0660 -3.6524 -2.5311 45 1 2.4194 -2.4962 -2.5313 46 1 2.1927 -4.6302 -5.7155 47 1 1.2214 -3.3920 -4.8516 48 1 3.3717 -2.7352 -6.4771 49 1 2.8977 -1.7545 -5.0581 50 1 5.3597 -2.7544 -4.9676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878947388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:37 Heat of formation + Delta-G solvation = -132.536927 kcal Electronic energy + Delta-G solvation = -31320.160809 eV Core-core repulsion = 27153.336886 eV Total energy + Delta-G solvation = -4166.823924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.63589 -40.71344 -40.11527 -37.43984 -37.31877 -36.31417 -34.54089 -33.77046 -32.25535 -31.31908 -29.71855 -29.07767 -27.61025 -26.29549 -25.09536 -24.74105 -23.28374 -22.60515 -21.41410 -21.04780 -19.87222 -18.72935 -18.39257 -17.80027 -17.59841 -17.21107 -17.08417 -16.68706 -16.49707 -16.31660 -16.04291 -15.92295 -15.79593 -15.30293 -14.87961 -14.73458 -14.63547 -14.38816 -14.28511 -13.93593 -13.64555 -13.54046 -13.34485 -13.24582 -13.18860 -12.93198 -12.89925 -12.67408 -12.54342 -12.36760 -12.19530 -12.07320 -11.88378 -11.77101 -11.69229 -11.46617 -10.78739 -10.73099 -10.66954 -10.44367 -9.97752 -9.56268 -9.40838 -8.21717 -6.34105 1.35198 1.38575 1.44495 1.66002 1.82295 2.24627 2.37699 2.53508 2.80626 2.95370 3.08089 3.47239 3.56357 3.78456 3.86393 3.89220 3.96999 3.99780 4.10997 4.16653 4.26663 4.29305 4.38148 4.44650 4.49088 4.54811 4.56030 4.66465 4.66966 4.76313 4.79535 4.80746 4.84824 4.88957 4.97943 5.00765 5.02577 5.13276 5.21410 5.25655 5.64391 5.75774 5.88643 5.92876 6.01099 6.06416 6.09937 6.12379 6.58435 6.82121 7.32564 7.38914 7.48021 8.83203 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008671 B = 0.004186 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3228.341624 B = 6687.104481 C = 8591.601682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.033 3.967 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.284 1.284 7 C -0.540 4.540 8 H 0.041 0.959 9 C 0.254 3.746 10 N -0.604 5.604 11 C 0.135 3.865 12 C 0.063 3.937 13 N -0.536 5.536 14 C 0.012 3.988 15 C 0.069 3.931 16 O -0.402 6.402 17 C 0.071 3.929 18 C 0.015 3.985 19 C 0.498 3.502 20 O -0.569 6.569 21 C -0.110 4.110 22 C -0.107 4.107 23 H 0.099 0.901 24 C -0.118 4.118 25 C 0.096 3.904 26 N -0.731 5.731 27 C 0.507 3.493 28 O -0.567 6.567 29 H 0.269 0.731 30 H 0.042 0.958 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.045 0.955 36 H 0.028 0.972 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.029 0.971 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.075 0.925 50 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -5.264 -4.237 7.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.169 4.169 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.210 1.210 7 C -0.578 4.578 8 H 0.059 0.941 9 C 0.133 3.867 10 N -0.336 5.336 11 C 0.011 3.989 12 C -0.066 4.066 13 N -0.262 5.262 14 C -0.116 4.116 15 C -0.008 4.008 16 O -0.321 6.321 17 C -0.006 4.006 18 C -0.114 4.114 19 C 0.287 3.713 20 O -0.449 6.449 21 C -0.150 4.150 22 C -0.129 4.129 23 H 0.117 0.883 24 C -0.156 4.156 25 C -0.027 4.027 26 N -0.386 5.386 27 C 0.293 3.707 28 O -0.445 6.445 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.047 0.953 44 H 0.141 0.859 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.093 0.907 50 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.106 -6.306 -3.718 7.952 hybrid contribution 0.763 2.229 -0.088 2.357 sum 3.868 -4.078 -3.806 6.788 Atomic orbital electron populations 1.69959 1.06691 1.28124 1.50272 1.25433 0.95438 1.01394 0.94597 0.85879 0.78688 0.80217 0.78487 1.19692 1.20122 1.21018 1.21539 0.92659 0.91805 1.51828 0.94092 1.19126 0.87241 0.82420 0.97868 1.48202 1.45238 1.35046 1.05087 1.21119 0.94891 0.97356 0.85486 1.22201 0.97296 0.96466 0.90646 1.62228 1.03043 1.58580 1.02345 1.22939 0.97211 0.99107 0.92339 1.22784 0.83899 0.98329 0.95797 1.87936 1.20282 1.81262 1.42622 1.22730 0.92475 1.00435 0.84930 1.22851 0.91191 0.97443 0.99879 1.21094 0.80725 0.82657 0.86791 1.90710 1.35297 1.30933 1.87993 1.21493 1.03005 1.00800 0.89737 1.21743 0.91872 1.02375 0.96910 0.88254 1.22780 1.00071 0.99296 0.93439 1.22353 0.82472 0.98717 0.99184 1.46322 1.11628 1.45732 1.34963 1.21309 0.91840 0.78399 0.79172 1.90742 1.51917 1.56115 1.45739 0.92210 0.94020 0.96174 0.90963 0.90198 0.95503 0.93586 0.95386 0.88708 0.91308 0.86303 0.91482 0.86362 0.89828 0.95280 0.85930 0.89114 0.87497 0.86838 0.86817 0.90677 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.76 13.29 21.45 0.28 -47.47 16 2 C 0.03 1.65 5.46 84.66 0.46 2.12 16 3 Si 0.94 41.23 29.54 68.60 2.03 43.26 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.54 -27.35 8.82 25.60 0.23 -27.13 16 8 H 0.04 2.20 7.42 -2.91 -0.02 2.18 16 9 C 0.25 11.67 5.01 85.63 0.43 12.10 16 10 N -0.60 -25.85 2.46 -826.15 -2.03 -27.88 16 11 C 0.14 5.36 5.39 86.38 0.47 5.83 16 12 C 0.06 2.53 5.28 86.31 0.46 2.99 16 13 N -0.54 -18.01 4.73 -895.22 -4.23 -22.25 16 14 C 0.01 0.36 5.44 86.31 0.47 0.83 16 15 C 0.07 1.65 7.01 72.01 0.50 2.15 16 16 O -0.40 -10.90 10.83 -148.98 -1.61 -12.52 16 17 C 0.07 1.73 7.01 72.01 0.50 2.24 16 18 C 0.01 0.44 5.64 86.31 0.49 0.93 16 19 C 0.50 21.28 7.48 87.66 0.66 21.93 16 20 O -0.57 -27.58 13.57 16.64 0.23 -27.36 16 21 C -0.11 -3.76 3.66 29.85 0.11 -3.65 16 22 C -0.11 -3.11 2.54 -10.80 -0.03 -3.14 16 23 H 0.10 3.06 7.90 -2.38 -0.02 3.04 16 24 C -0.12 -2.02 6.71 31.65 0.21 -1.81 16 25 C 0.10 1.60 7.78 86.83 0.68 2.28 16 26 N -0.73 -18.27 6.24 -459.82 -2.87 -21.14 16 27 C 0.51 17.84 7.43 87.90 0.65 18.49 16 28 O -0.57 -26.54 16.21 16.63 0.27 -26.28 16 29 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.04 1.89 6.44 -2.38 -0.02 1.87 16 31 H 0.02 0.98 7.89 -2.39 -0.02 0.96 16 32 H 0.07 2.94 7.42 -2.39 -0.02 2.92 16 33 H 0.08 2.91 6.27 -2.38 -0.01 2.90 16 34 H 0.03 1.20 7.24 -2.39 -0.02 1.18 16 35 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 2.64 6.38 -2.38 -0.02 2.63 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.08 2.50 8.09 -2.39 -0.02 2.48 16 43 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.12 3.57 7.36 -2.39 -0.02 3.55 16 45 H 0.09 3.36 7.98 -2.39 -0.02 3.34 16 46 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.11 1.56 7.87 -2.39 -0.02 1.54 16 48 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 50 H 0.41 9.06 8.96 -92.70 -0.83 8.22 16 Total: -1.00 -73.27 395.69 -1.54 -74.81 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.11 Total: 30.66 kcal Atomic # 6 Polarization: 29.88 SS G_CDS: 6.28 Total: 36.16 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -8.84 Total: -118.74 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: -1.12 Total: -66.15 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -73.27 -1.54 -74.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878947388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.727 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds