Wall clock time and date at job start Sat Apr 11 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48501 * 109.46918 * 269.99877 * 3 2 1 5 5 H 1.48502 * 109.47230 * 29.99447 * 3 2 1 6 6 H 1.48492 * 109.47052 * 149.99820 * 3 2 1 7 7 C 1.38949 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99954 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99713 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99895 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99701 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99941 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46917 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99890 * 179.97438 * 13 12 10 15 15 O 1.21580 * 120.00209 * 4.98839 * 14 13 12 16 16 N 1.34776 * 119.99826 * 184.98500 * 14 13 12 17 17 C 1.47613 * 118.64077 * 174.81113 * 16 14 13 18 18 C 1.53939 * 112.14145 * 222.16045 * 17 16 14 19 19 C 1.50881 * 110.09792 * 40.56538 * 18 17 16 20 20 C 1.52564 * 109.34756 * 268.11131 * 19 18 17 21 21 C 1.47095 * 114.33204 * 85.01893 * 20 19 18 22 22 H 1.08998 * 109.18998 * 57.36779 * 21 20 19 23 23 C 1.53006 * 109.32945 * 176.93329 * 21 20 19 24 24 H 1.08996 * 110.80142 * 57.24162 * 23 21 20 25 25 C 1.54812 * 110.90804 * 180.87038 * 23 21 20 26 26 C 1.54087 * 104.18831 * 139.07770 * 25 23 21 27 27 O 1.43744 * 107.42562 * 1.95414 * 26 25 23 28 28 C 1.44577 * 106.86455 * 333.67332 * 27 26 25 29 29 C 1.44583 * 118.64468 * 354.83367 * 16 14 13 30 30 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00273 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47044 * 59.99969 * 12 10 9 33 33 H 1.08998 * 109.46906 * 300.00079 * 12 10 9 34 34 H 0.97006 * 119.99846 * 359.97438 * 13 12 10 35 35 H 1.08999 * 108.94524 * 342.84526 * 17 16 14 36 36 H 1.08993 * 108.94524 * 101.47213 * 17 16 14 37 37 H 1.09007 * 109.36778 * 160.75038 * 18 17 16 38 38 H 1.09000 * 109.37309 * 280.49509 * 18 17 16 39 39 H 1.09000 * 109.48805 * 28.07224 * 19 18 17 40 40 H 1.08993 * 109.49327 * 148.14901 * 19 18 17 41 41 H 1.09002 * 108.51183 * 323.76155 * 20 19 18 42 42 H 1.09004 * 108.51416 * 206.27690 * 20 19 18 43 43 H 1.08997 * 110.48747 * 20.39944 * 25 23 21 44 44 H 1.09003 * 110.48446 * 257.75523 * 25 23 21 45 45 H 1.09002 * 109.87955 * 121.45596 * 26 25 23 46 46 H 1.09006 * 109.88196 * 242.45032 * 26 25 23 47 47 H 1.09003 * 110.50289 * 281.37199 * 28 27 26 48 48 H 1.09003 * 110.63898 * 158.44779 * 28 27 26 49 49 H 1.08992 * 109.44655 * 329.21552 * 29 16 14 50 50 H 1.08998 * 109.44562 * 209.29834 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3705 0.0022 13 7 6.0491 -3.7517 0.0014 14 6 7.3742 -3.9980 0.0017 15 8 8.1635 -3.0779 0.0942 16 7 7.8242 -5.2643 -0.1005 17 6 9.2784 -5.4913 -0.2141 18 6 9.6173 -6.5698 -1.2589 19 6 8.7334 -6.4129 -2.4716 20 6 7.4878 -7.2778 -2.3045 21 6 6.4032 -6.6379 -1.5443 22 1 6.1272 -5.7029 -2.0317 23 6 5.1897 -7.5693 -1.5116 24 1 5.4542 -8.5347 -1.0804 25 6 4.0163 -6.9211 -0.7372 26 6 2.7703 -7.2803 -1.5694 27 8 3.2082 -8.0928 -2.6714 28 6 4.5869 -7.7422 -2.9290 29 6 6.8628 -6.3441 -0.0949 30 1 -0.4850 0.8401 -0.0004 31 1 3.8649 -0.3633 0.0014 32 1 5.9234 -1.8571 0.8927 33 1 5.9248 -1.8563 -0.8872 34 1 5.4187 -4.4890 0.0006 35 1 9.7611 -4.5570 -0.5005 36 1 9.6644 -5.8045 0.7559 37 1 10.6610 -6.4690 -1.5570 38 1 9.4594 -7.5568 -0.8241 39 1 8.4397 -5.3683 -2.5748 40 1 9.2779 -6.7276 -3.3618 41 1 7.7715 -8.1984 -1.7944 42 1 7.1108 -7.5367 -3.2939 43 1 4.1432 -5.8396 -0.6876 44 1 3.9409 -7.3437 0.2647 45 1 2.0630 -7.8383 -0.9557 46 1 2.2994 -6.3711 -1.9433 47 1 4.6454 -6.8080 -3.4877 48 1 5.0933 -8.5441 -3.4663 49 1 6.0010 -6.0596 0.5086 50 1 7.3227 -7.2372 0.3281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894820321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:39 Heat of formation + Delta-G solvation = -111.387020 kcal Electronic energy + Delta-G solvation = -31603.276635 eV Core-core repulsion = 27437.369840 eV Total energy + Delta-G solvation = -4165.906795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93349 -39.47322 -38.56946 -37.60095 -34.87246 -34.28122 -34.05394 -33.33945 -31.81179 -30.80523 -28.93786 -28.00884 -26.69271 -25.31165 -24.26736 -22.80115 -22.00911 -20.71923 -20.36788 -19.75278 -19.44773 -18.75675 -17.88844 -16.86421 -16.44279 -16.15177 -15.72041 -15.46861 -15.19195 -15.09129 -14.80090 -14.68421 -14.26940 -14.15756 -14.03862 -13.61694 -13.41974 -13.25990 -13.12138 -12.76949 -12.55060 -12.43785 -12.34791 -12.17029 -12.06774 -11.64254 -11.45133 -11.25594 -11.23288 -11.01486 -10.96896 -10.67191 -10.65779 -10.62632 -10.46519 -10.08631 -10.00700 -9.71483 -9.63030 -9.00498 -8.78365 -8.50903 -8.32116 -6.42700 -3.95197 2.63618 2.98235 3.03012 3.11445 3.25821 3.54881 3.86055 3.94742 4.02146 4.36357 4.36930 4.53148 4.55840 4.66460 4.70657 4.83625 4.97478 5.00716 5.12516 5.13429 5.23543 5.26344 5.29951 5.35469 5.45859 5.52164 5.56610 5.63081 5.65867 5.68391 5.76555 5.77156 5.83467 5.83545 5.89857 5.95052 5.97882 6.01620 6.07831 6.12491 6.24080 6.52869 6.62655 6.87390 6.96155 7.42824 7.97914 8.06995 8.42026 8.68125 8.79658 9.27891 9.61005 10.69344 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003644 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.224715 B = 7682.652335 C = 9696.981215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.046 3.954 3 Si 0.878 3.122 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.122 3.878 13 N -0.726 5.726 14 C 0.703 3.297 15 O -0.596 6.596 16 N -0.622 5.622 17 C 0.130 3.870 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.098 4.098 22 H 0.079 0.921 23 C -0.115 4.115 24 H 0.086 0.914 25 C -0.156 4.156 26 C 0.048 3.952 27 O -0.383 6.383 28 C 0.053 3.947 29 C 0.115 3.885 30 H 0.276 0.724 31 H 0.374 0.626 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.406 0.594 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.909 -14.483 -2.994 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.158 4.158 3 Si 0.704 3.296 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.213 5.213 10 C 0.224 3.776 11 O -0.463 6.463 12 C -0.006 4.006 13 N -0.386 5.386 14 C 0.404 3.596 15 O -0.475 6.475 16 N -0.358 5.358 17 C 0.008 3.992 18 C -0.169 4.169 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.118 4.118 22 H 0.097 0.903 23 C -0.134 4.134 24 H 0.104 0.896 25 C -0.193 4.193 26 C -0.029 4.029 27 O -0.302 6.302 28 C -0.023 4.023 29 C -0.009 4.009 30 H 0.086 0.914 31 H 0.207 0.793 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.247 0.753 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.106 0.894 49 H 0.097 0.903 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.711 -14.537 -3.036 22.357 hybrid contribution 0.253 1.236 0.174 1.273 sum 16.964 -13.302 -2.862 21.746 Atomic orbital electron populations 1.69618 1.05704 1.27818 1.48116 1.25060 0.95516 0.98149 0.97120 0.86688 0.79940 0.83834 0.79145 1.19403 1.19989 1.19215 1.19426 0.78917 0.96766 1.48670 0.86047 1.42115 1.07695 1.06131 1.65327 1.19630 0.88009 0.84914 0.85025 1.90500 1.69203 1.30830 1.55797 1.20833 0.93495 0.83091 1.03221 1.45035 1.05391 1.09262 1.78961 1.15893 0.82599 0.83131 0.77991 1.90882 1.55185 1.43219 1.58207 1.46801 1.06844 1.04385 1.77781 1.21666 0.78850 1.00262 0.98442 1.21803 1.00118 0.99027 0.95972 1.21038 0.95786 1.01064 0.97483 1.20505 0.95160 0.98900 1.00419 1.20896 0.94496 0.99493 0.96903 0.90268 1.22750 0.94640 0.99286 0.96696 0.89601 1.23095 0.93699 1.02967 0.99571 1.23138 0.96688 0.95387 0.87646 1.88883 1.26703 1.62601 1.51993 1.23604 0.82281 1.00595 0.95864 1.21596 0.92361 0.90925 0.96046 0.91384 0.79258 0.89860 0.90007 0.75302 0.89206 0.92332 0.90685 0.91615 0.91443 0.91878 0.92075 0.92119 0.89014 0.90529 0.90054 0.91584 0.92094 0.89374 0.90345 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.64 13.96 55.50 0.77 -23.87 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.81 27.74 -169.99 -4.71 14.10 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 7 C -0.31 -8.33 10.16 -14.93 -0.15 -8.48 16 8 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16 9 N -0.58 -13.05 5.09 -10.96 -0.06 -13.10 16 10 C 0.44 9.31 7.85 -10.98 -0.09 9.23 16 11 O -0.58 -13.68 14.78 5.55 0.08 -13.60 16 12 C 0.12 2.11 6.16 -5.19 -0.03 2.08 16 13 N -0.73 -11.65 5.36 -66.42 -0.36 -12.00 16 14 C 0.70 10.98 8.19 -86.92 -0.71 10.27 16 15 O -0.60 -11.07 15.66 5.30 0.08 -10.99 16 16 N -0.62 -7.34 2.24 -178.27 -0.40 -7.74 16 17 C 0.13 1.28 6.07 -2.94 -0.02 1.27 16 18 C -0.13 -0.95 5.71 -27.31 -0.16 -1.10 16 19 C -0.12 -0.94 5.51 -28.02 -0.15 -1.10 16 20 C -0.11 -0.88 4.35 -29.79 -0.13 -1.01 16 21 C -0.10 -0.92 1.46 -92.47 -0.14 -1.06 16 22 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 23 C -0.11 -1.10 2.64 -88.61 -0.23 -1.34 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 25 C -0.16 -1.85 5.41 -25.21 -0.14 -1.99 16 26 C 0.05 0.64 7.69 37.73 0.29 0.93 16 27 O -0.38 -5.26 11.54 -35.23 -0.41 -5.66 16 28 C 0.05 0.57 6.23 38.21 0.24 0.81 16 29 C 0.12 1.14 4.30 -4.08 -0.02 1.12 16 30 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.41 6.37 3.55 -40.82 -0.14 6.23 16 35 H 0.09 1.04 7.02 -51.93 -0.36 0.68 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.42 7.31 -51.93 -0.38 0.04 16 39 H 0.07 0.71 7.48 -51.93 -0.39 0.32 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.42 7.36 -51.93 -0.38 0.03 16 42 H 0.06 0.46 7.03 -51.93 -0.36 0.09 16 43 H 0.09 1.31 5.61 -51.93 -0.29 1.02 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16 48 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 49 H 0.08 0.86 5.10 -51.93 -0.26 0.60 16 50 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -31.69 381.62 -8.62 -40.31 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -7.84 Total: 16.06 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.53 Total: 10.74 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.04 Total: -56.72 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.24 Total: -30.25 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.69 -8.62 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894820321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.077 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds