Wall clock time and date at job start Sat Apr 11 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48501 * 109.46918 * 269.99877 * 3 2 1 5 5 H 1.48502 * 109.47230 * 29.99447 * 3 2 1 6 6 H 1.48492 * 109.47052 * 149.99820 * 3 2 1 7 7 C 1.38949 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99954 * 0.02562 * 7 2 1 9 9 N 1.37097 * 119.99713 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99895 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99701 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99941 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46917 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99890 * 179.97438 * 13 12 10 15 15 O 1.21580 * 120.00209 * 4.98839 * 14 13 12 16 16 N 1.34776 * 119.99826 * 184.98500 * 14 13 12 17 17 C 1.47613 * 118.64077 * 174.81113 * 16 14 13 18 18 C 1.53939 * 112.14145 * 222.16045 * 17 16 14 19 19 C 1.50881 * 110.09792 * 40.56538 * 18 17 16 20 20 C 1.52564 * 109.34756 * 268.11131 * 19 18 17 21 21 C 1.47095 * 114.33204 * 85.01893 * 20 19 18 22 22 H 1.08998 * 109.18998 * 57.36779 * 21 20 19 23 23 C 1.53006 * 109.32945 * 176.93329 * 21 20 19 24 24 H 1.08996 * 110.80142 * 57.24162 * 23 21 20 25 25 C 1.54812 * 110.90804 * 180.87038 * 23 21 20 26 26 C 1.54087 * 104.18831 * 139.07770 * 25 23 21 27 27 O 1.43744 * 107.42562 * 1.95414 * 26 25 23 28 28 C 1.44577 * 106.86455 * 333.67332 * 27 26 25 29 29 C 1.44583 * 118.64468 * 354.83367 * 16 14 13 30 30 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00273 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47044 * 59.99969 * 12 10 9 33 33 H 1.08998 * 109.46906 * 300.00079 * 12 10 9 34 34 H 0.97006 * 119.99846 * 359.97438 * 13 12 10 35 35 H 1.08999 * 108.94524 * 342.84526 * 17 16 14 36 36 H 1.08993 * 108.94524 * 101.47213 * 17 16 14 37 37 H 1.09007 * 109.36778 * 160.75038 * 18 17 16 38 38 H 1.09000 * 109.37309 * 280.49509 * 18 17 16 39 39 H 1.09000 * 109.48805 * 28.07224 * 19 18 17 40 40 H 1.08993 * 109.49327 * 148.14901 * 19 18 17 41 41 H 1.09002 * 108.51183 * 323.76155 * 20 19 18 42 42 H 1.09004 * 108.51416 * 206.27690 * 20 19 18 43 43 H 1.08997 * 110.48747 * 20.39944 * 25 23 21 44 44 H 1.09003 * 110.48446 * 257.75523 * 25 23 21 45 45 H 1.09002 * 109.87955 * 121.45596 * 26 25 23 46 46 H 1.09006 * 109.88196 * 242.45032 * 26 25 23 47 47 H 1.09003 * 110.50289 * 281.37199 * 28 27 26 48 48 H 1.09003 * 110.63898 * 158.44779 * 28 27 26 49 49 H 1.08992 * 109.44655 * 329.21552 * 29 16 14 50 50 H 1.08998 * 109.44562 * 209.29834 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0001 12 6 5.5608 -2.3705 0.0022 13 7 6.0491 -3.7517 0.0014 14 6 7.3742 -3.9980 0.0017 15 8 8.1635 -3.0779 0.0942 16 7 7.8242 -5.2643 -0.1005 17 6 9.2784 -5.4913 -0.2141 18 6 9.6173 -6.5698 -1.2589 19 6 8.7334 -6.4129 -2.4716 20 6 7.4878 -7.2778 -2.3045 21 6 6.4032 -6.6379 -1.5443 22 1 6.1272 -5.7029 -2.0317 23 6 5.1897 -7.5693 -1.5116 24 1 5.4542 -8.5347 -1.0804 25 6 4.0163 -6.9211 -0.7372 26 6 2.7703 -7.2803 -1.5694 27 8 3.2082 -8.0928 -2.6714 28 6 4.5869 -7.7422 -2.9290 29 6 6.8628 -6.3441 -0.0949 30 1 -0.4850 0.8401 -0.0004 31 1 3.8649 -0.3633 0.0014 32 1 5.9234 -1.8571 0.8927 33 1 5.9248 -1.8563 -0.8872 34 1 5.4187 -4.4890 0.0006 35 1 9.7611 -4.5570 -0.5005 36 1 9.6644 -5.8045 0.7559 37 1 10.6610 -6.4690 -1.5570 38 1 9.4594 -7.5568 -0.8241 39 1 8.4397 -5.3683 -2.5748 40 1 9.2779 -6.7276 -3.3618 41 1 7.7715 -8.1984 -1.7944 42 1 7.1108 -7.5367 -3.2939 43 1 4.1432 -5.8396 -0.6876 44 1 3.9409 -7.3437 0.2647 45 1 2.0630 -7.8383 -0.9557 46 1 2.2994 -6.3711 -1.9433 47 1 4.6454 -6.8080 -3.4877 48 1 5.0933 -8.5441 -3.4663 49 1 6.0010 -6.0596 0.5086 50 1 7.3227 -7.2372 0.3281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894820321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:38 Heat of formation + Delta-G solvation = -133.681720 kcal Electronic energy + Delta-G solvation = -31604.243405 eV Core-core repulsion = 27437.369840 eV Total energy + Delta-G solvation = -4166.873565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95960 -40.62140 -40.17742 -38.63296 -36.35691 -35.63172 -35.24596 -34.36877 -33.80461 -31.72118 -29.91971 -29.38644 -27.67454 -26.38623 -25.78547 -23.78162 -22.97571 -21.54780 -21.46953 -21.20680 -20.77233 -20.29468 -19.16804 -17.89527 -17.47725 -17.37938 -17.09432 -16.81837 -16.69373 -16.32278 -15.96881 -15.91245 -15.39416 -15.23643 -15.03624 -14.88872 -14.53658 -14.37525 -14.24593 -14.19680 -13.92152 -13.72207 -13.53233 -13.20745 -13.17627 -12.96833 -12.44961 -12.41656 -12.35926 -12.12693 -12.01220 -11.84963 -11.64238 -11.57746 -11.50508 -11.39443 -11.21433 -11.15100 -10.69742 -10.61995 -10.34012 -10.26612 -9.49359 -8.45434 -6.06650 1.30101 1.32901 1.42150 1.54091 1.78383 2.06476 2.19687 2.67629 2.93827 3.02091 3.11080 3.49939 3.60795 3.74086 3.91298 3.97295 4.01540 4.07696 4.11852 4.18401 4.33630 4.34933 4.37697 4.40405 4.45001 4.53179 4.56775 4.70539 4.78929 4.80116 4.86320 4.87453 4.90835 5.01367 5.07715 5.12652 5.20162 5.28561 5.30350 5.36574 5.39426 5.48498 5.50330 5.66957 5.85022 5.89006 5.91019 6.48893 6.78521 6.87976 7.28534 7.47006 7.77841 8.70852 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003644 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.224715 B = 7682.652335 C = 9696.981215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.007 4.007 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.327 4.327 8 H 0.066 0.934 9 N -0.578 5.578 10 C 0.446 3.554 11 O -0.605 6.605 12 C 0.133 3.867 13 N -0.730 5.730 14 C 0.699 3.301 15 O -0.628 6.628 16 N -0.612 5.612 17 C 0.125 3.875 18 C -0.122 4.122 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.087 4.087 22 H 0.047 0.953 23 C -0.099 4.099 24 H 0.113 0.887 25 C -0.154 4.154 26 C 0.045 3.955 27 O -0.399 6.399 28 C 0.047 3.953 29 C 0.112 3.888 30 H 0.280 0.720 31 H 0.390 0.610 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.408 0.592 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.034 0.966 47 H 0.047 0.953 48 H 0.116 0.884 49 H 0.065 0.935 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.406 -15.539 -2.852 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.207 4.207 3 Si 0.776 3.224 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.456 4.456 8 H 0.084 0.916 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.490 6.490 12 C 0.004 3.996 13 N -0.391 5.391 14 C 0.400 3.600 15 O -0.510 6.510 16 N -0.347 5.347 17 C 0.004 3.996 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.107 4.107 22 H 0.066 0.934 23 C -0.118 4.118 24 H 0.132 0.868 25 C -0.192 4.192 26 C -0.031 4.031 27 O -0.318 6.318 28 C -0.029 4.029 29 C -0.012 4.012 30 H 0.090 0.910 31 H 0.226 0.774 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.134 0.866 49 H 0.083 0.917 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 20.243 -15.645 -2.901 25.747 hybrid contribution -0.861 1.414 0.099 1.659 sum 19.381 -14.231 -2.802 24.207 Atomic orbital electron populations 1.69779 1.07956 1.29351 1.49465 1.26013 0.96375 1.02431 0.95855 0.85489 0.79590 0.77350 0.79984 1.18230 1.19857 1.15738 1.19015 0.80840 0.95259 1.50495 0.91624 1.41916 1.06151 1.07343 1.66427 1.20417 0.89798 0.84049 0.82437 1.90503 1.70534 1.31959 1.55998 1.20719 0.89772 0.84386 1.04705 1.45033 1.05913 1.08726 1.79403 1.16051 0.81891 0.84171 0.77876 1.90854 1.55703 1.44585 1.59816 1.46889 1.08083 1.03371 1.76334 1.21876 0.77183 1.00370 1.00209 1.21785 1.00735 0.98836 0.94591 1.21029 0.96281 0.99269 0.98702 1.20504 0.94289 0.99471 1.00646 1.20770 0.95082 0.98232 0.96645 0.93405 1.22701 0.93515 1.00159 0.95456 0.86847 1.23044 0.94229 1.01399 1.00509 1.23107 0.97667 0.94369 0.88004 1.88863 1.28463 1.62439 1.52078 1.23805 0.81251 1.01053 0.96771 1.21760 0.91858 0.91309 0.96253 0.90993 0.77394 0.88314 0.88364 0.75155 0.91384 0.90882 0.89073 0.89463 0.94510 0.90451 0.89586 0.91677 0.91938 0.89055 0.89056 0.94712 0.93473 0.86600 0.91708 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.96 21.66 0.30 -53.98 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 3 Si 0.96 38.31 27.74 68.60 1.90 40.21 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.23 -8.06 6.52 99.48 0.65 -7.42 16 7 C -0.33 -18.40 10.16 84.04 0.85 -17.55 16 8 H 0.07 4.34 7.39 -2.91 -0.02 4.32 16 9 N -0.58 -26.48 5.09 -306.98 -1.56 -28.05 16 10 C 0.45 19.30 7.85 87.66 0.69 19.99 16 11 O -0.60 -29.98 14.78 -3.07 -0.05 -30.02 16 12 C 0.13 4.51 6.16 85.63 0.53 5.04 16 13 N -0.73 -23.41 5.36 -482.31 -2.59 -26.00 16 14 C 0.70 21.44 8.19 179.06 1.47 22.91 16 15 O -0.63 -22.99 15.66 -3.97 -0.06 -23.05 16 16 N -0.61 -13.52 2.24 -836.20 -1.87 -15.39 16 17 C 0.13 2.18 6.07 86.48 0.53 2.71 16 18 C -0.12 -1.31 5.71 30.22 0.17 -1.14 16 19 C -0.12 -1.56 5.51 29.76 0.16 -1.39 16 20 C -0.11 -1.38 4.35 28.61 0.12 -1.26 16 21 C -0.09 -1.50 1.46 -11.99 -0.02 -1.52 16 22 H 0.05 1.14 8.09 -2.39 -0.02 1.12 16 23 C -0.10 -1.74 2.64 -9.49 -0.03 -1.76 16 24 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 25 C -0.15 -3.70 5.41 31.58 0.17 -3.53 16 26 C 0.05 1.26 7.69 72.35 0.56 1.82 16 27 O -0.40 -10.94 11.54 -148.98 -1.72 -12.66 16 28 C 0.05 0.97 6.23 72.66 0.45 1.42 16 29 C 0.11 1.97 4.30 87.37 0.38 2.35 16 30 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.39 15.20 5.76 -92.71 -0.53 14.67 16 32 H 0.10 3.11 8.14 -2.39 -0.02 3.10 16 33 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.41 13.06 3.55 -92.70 -0.33 12.73 16 35 H 0.07 1.51 7.02 -2.39 -0.02 1.49 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.09 0.63 7.31 -2.39 -0.02 0.61 16 39 H 0.04 0.73 7.48 -2.39 -0.02 0.72 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.70 7.36 -2.39 -0.02 0.69 16 42 H 0.06 0.78 7.03 -2.38 -0.02 0.76 16 43 H 0.06 1.89 5.61 -2.39 -0.01 1.88 16 44 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.05 1.08 8.01 -2.39 -0.02 1.06 16 48 H 0.12 1.73 7.93 -2.39 -0.02 1.71 16 49 H 0.06 1.35 5.10 -2.39 -0.01 1.34 16 50 H 0.11 1.31 8.07 -2.39 -0.02 1.29 16 Total: -1.00 -74.29 381.62 0.90 -73.38 By element: Atomic # 1 Polarization: 47.35 SS G_CDS: 0.04 Total: 47.39 kcal Atomic # 6 Polarization: 21.67 SS G_CDS: 6.50 Total: 28.18 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.72 Total: -123.42 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -1.83 Total: -65.74 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal Total: -74.29 0.90 -73.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894820321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.297 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds