Wall clock time and date at job start Sat Apr 11 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48494 * 109.47146 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47109 * 120.00008 * 3 2 1 6 6 H 1.48501 * 109.46992 * 239.99696 * 3 2 1 7 7 C 1.38946 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99985 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00285 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00121 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99901 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46990 * 180.02562 * 12 10 9 14 14 C 1.34775 * 120.00037 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99980 * 355.01761 * 14 13 12 16 16 N 1.34780 * 120.00297 * 175.01119 * 14 13 12 17 17 C 1.47592 * 118.64614 * 184.90290 * 16 14 13 18 18 C 1.54299 * 111.94494 * 137.78056 * 17 16 14 19 19 C 1.50887 * 110.23390 * 319.70106 * 18 17 16 20 20 C 1.52565 * 109.35625 * 91.79469 * 19 18 17 21 21 C 1.47085 * 114.33146 * 274.98767 * 20 19 18 22 22 H 1.09005 * 109.32974 * 302.54633 * 21 20 19 23 23 C 1.52995 * 109.19362 * 182.97546 * 21 20 19 24 24 H 1.08996 * 110.45613 * 298.51783 * 23 21 20 25 25 C 1.54511 * 110.50933 * 61.12134 * 23 21 20 26 26 C 1.54479 * 104.06157 * 118.64654 * 25 23 21 27 27 O 1.44432 * 104.80618 * 23.97987 * 26 25 23 28 28 C 1.44643 * 105.36359 * 319.56661 * 27 26 25 29 29 C 1.44580 * 118.63736 * 5.17480 * 16 14 13 30 30 H 0.97009 * 120.00290 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99998 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47025 * 300.00028 * 12 10 9 33 33 H 1.09000 * 109.47132 * 59.99855 * 12 10 9 34 34 H 0.97000 * 120.00006 * 359.97438 * 13 12 10 35 35 H 1.09005 * 108.94823 * 258.57951 * 17 16 14 36 36 H 1.09003 * 108.94789 * 17.20576 * 17 16 14 37 37 H 1.09003 * 109.37034 * 199.42500 * 18 17 16 38 38 H 1.08997 * 109.12100 * 79.82394 * 18 17 16 39 39 H 1.09003 * 109.48814 * 331.83326 * 19 18 17 40 40 H 1.08998 * 109.48667 * 211.76620 * 19 18 17 41 41 H 1.09001 * 108.50705 * 153.73546 * 20 19 18 42 42 H 1.09005 * 108.39117 * 36.15659 * 20 19 18 43 43 H 1.08999 * 110.51023 * 237.29129 * 25 23 21 44 44 H 1.08999 * 110.50928 * 359.87071 * 25 23 21 45 45 H 1.09001 * 110.37636 * 142.80894 * 26 25 23 46 46 H 1.09003 * 110.37622 * 265.15150 * 26 25 23 47 47 H 1.08999 * 110.34273 * 281.58642 * 28 27 26 48 48 H 1.09000 * 110.50858 * 159.18696 * 28 27 26 49 49 H 1.08993 * 109.45483 * 30.74311 * 29 16 14 50 50 H 1.09005 * 109.44615 * 150.69451 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6963 1.2125 6 1 3.1019 1.6963 -1.2125 7 6 2.0087 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7463 -7.2472 0.0027 15 8 0.5547 -7.4706 0.0947 16 7 2.6179 -8.2703 -0.0983 17 6 2.0878 -9.6436 -0.2046 18 6 2.8530 -10.4776 -1.2532 19 6 3.1600 -9.6354 -2.4669 20 6 4.5317 -8.9887 -2.2999 21 6 4.5191 -7.7284 -1.5416 22 1 3.8492 -7.0204 -2.0296 23 6 5.9339 -7.1469 -1.5090 24 1 6.6163 -7.8331 -1.0075 25 6 6.4274 -6.8429 -2.9412 26 6 6.6701 -5.3173 -2.9387 27 8 6.8940 -4.9815 -1.5519 28 6 5.9375 -5.7707 -0.8073 29 6 4.0338 -7.9775 -0.0921 30 1 -0.4851 -0.8401 0.0004 31 1 0.3532 -2.3907 0.0005 32 1 0.6173 -4.9205 0.8914 33 1 0.6166 -4.9209 -0.8886 34 1 3.1493 -5.7993 0.0012 35 1 2.1685 -10.1303 0.7674 36 1 1.0364 -9.5961 -0.4885 37 1 2.2442 -11.3315 -1.5503 38 1 3.7854 -10.8335 -0.8150 39 1 2.4022 -8.8590 -2.5719 40 1 3.1609 -10.2658 -3.3561 41 1 4.9448 -8.7931 -3.2894 42 1 5.1846 -9.6948 -1.7868 43 1 7.3551 -7.3769 -3.1469 44 1 5.6643 -7.1090 -3.6726 45 1 7.5488 -5.0718 -3.5351 46 1 5.7936 -4.7929 -3.3193 47 1 4.9484 -5.3156 -0.8594 48 1 6.2539 -5.8748 0.2306 49 1 4.2179 -7.0881 0.5102 50 1 4.5771 -8.8220 0.3319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894820323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:44 Heat of formation + Delta-G solvation = -115.105734 kcal Electronic energy + Delta-G solvation = -31669.778261 eV Core-core repulsion = 27503.710210 eV Total energy + Delta-G solvation = -4166.068050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95039 -39.48354 -38.49978 -37.56308 -34.91811 -34.39626 -34.16020 -33.28636 -31.22349 -30.71396 -29.14561 -27.73721 -26.38582 -25.52144 -24.19054 -22.71598 -22.24208 -20.85913 -20.17797 -19.92740 -19.51174 -18.33831 -17.97626 -16.90400 -16.36693 -16.16765 -15.81817 -15.51777 -15.31552 -15.16295 -14.74167 -14.48097 -14.32348 -14.10586 -13.95500 -13.76709 -13.57110 -13.38545 -12.98910 -12.79522 -12.57870 -12.40265 -12.23473 -11.99296 -11.69947 -11.55282 -11.30135 -11.25958 -11.13782 -10.99972 -10.95681 -10.70353 -10.58839 -10.43991 -10.23780 -10.02651 -9.92336 -9.68428 -9.64367 -8.98463 -8.65252 -8.50112 -8.14437 -6.83089 -3.97462 2.64935 3.23897 3.29032 3.32654 3.52735 3.70933 3.89905 4.00231 4.21890 4.24909 4.36752 4.60233 4.65186 4.69112 4.72437 4.82022 4.87177 4.98518 5.05144 5.18635 5.20079 5.25604 5.29816 5.33394 5.47123 5.48444 5.57104 5.58368 5.68207 5.72086 5.74961 5.81492 5.83803 5.85780 5.87916 5.89149 5.92884 5.96326 6.02316 6.08420 6.20474 6.53026 6.65828 6.84456 6.95653 7.69383 7.98986 8.08290 8.46754 8.65433 8.70377 9.36016 9.69870 10.59680 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.003549 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.695371 B = 7888.284500 C = 9823.365552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C -0.006 4.006 3 Si 1.091 2.909 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.385 4.385 8 H 0.102 0.898 9 N -0.561 5.561 10 C 0.430 3.570 11 O -0.587 6.587 12 C 0.125 3.875 13 N -0.726 5.726 14 C 0.702 3.298 15 O -0.595 6.595 16 N -0.622 5.622 17 C 0.130 3.870 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.100 4.100 22 H 0.078 0.922 23 C -0.116 4.116 24 H 0.083 0.917 25 C -0.150 4.150 26 C 0.043 3.957 27 O -0.372 6.372 28 C 0.045 3.955 29 C 0.114 3.886 30 H 0.263 0.737 31 H 0.379 0.621 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.406 0.594 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.076 0.924 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.291 -20.252 -4.689 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.209 4.209 3 Si 0.917 3.083 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.514 4.514 8 H 0.120 0.880 9 N -0.197 5.197 10 C 0.216 3.784 11 O -0.473 6.473 12 C -0.003 4.003 13 N -0.385 5.385 14 C 0.403 3.597 15 O -0.474 6.474 16 N -0.358 5.358 17 C 0.008 3.992 18 C -0.169 4.169 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.120 4.120 22 H 0.097 0.903 23 C -0.135 4.135 24 H 0.102 0.898 25 C -0.187 4.187 26 C -0.034 4.034 27 O -0.290 6.290 28 C -0.032 4.032 29 C -0.010 4.010 30 H 0.075 0.925 31 H 0.212 0.788 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.246 0.754 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.107 0.893 49 H 0.094 0.906 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.202 -18.567 -4.535 21.213 hybrid contribution -0.075 -1.797 -0.102 1.801 sum 9.127 -20.364 -4.636 22.792 Atomic orbital electron populations 1.70899 1.06567 1.29636 1.46111 1.26567 0.96493 1.02747 0.95097 0.83133 0.74468 0.73520 0.77191 1.20335 1.20877 1.20891 1.20568 0.94789 0.83601 1.52439 0.88018 1.41844 1.08442 1.05390 1.64026 1.19664 0.88385 0.84693 0.85650 1.90495 1.13468 1.86641 1.56725 1.20804 0.91401 0.85119 1.03026 1.45030 1.11241 1.03405 1.78870 1.15906 0.85041 0.80713 0.78015 1.90887 1.14369 1.83998 1.58171 1.46785 1.05176 1.05970 1.77913 1.21745 0.99260 0.79835 0.98408 1.21858 1.00881 0.98222 0.95920 1.21040 0.97541 0.99351 0.97450 1.20531 0.97339 0.96537 1.00542 1.20961 0.95984 0.98152 0.96860 0.90324 1.22587 0.96308 0.98099 0.96512 0.89820 1.23036 1.01754 0.97068 0.96869 1.23394 1.01531 0.93822 0.84608 1.89164 1.57117 1.65715 1.17015 1.23672 0.94548 0.88775 0.96170 1.21589 0.81474 1.01910 0.96041 0.92542 0.78770 0.90038 0.90212 0.75425 0.92278 0.89185 0.90698 0.91656 0.91466 0.91914 0.91911 0.92155 0.90842 0.90289 0.89451 0.92131 0.90572 0.89303 0.90567 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 13.68 55.50 0.76 -23.91 16 2 C -0.01 -0.15 5.50 -17.47 -0.10 -0.24 16 3 Si 1.09 23.86 29.92 -169.99 -5.09 18.78 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.38 -10.53 9.68 -14.94 -0.14 -10.67 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 9 N -0.56 -13.74 5.28 -10.96 -0.06 -13.80 16 10 C 0.43 9.78 7.85 -10.98 -0.09 9.70 16 11 O -0.59 -14.71 14.81 5.55 0.08 -14.62 16 12 C 0.13 2.33 6.16 -5.19 -0.03 2.30 16 13 N -0.73 -12.33 5.36 -66.41 -0.36 -12.69 16 14 C 0.70 11.49 8.19 -86.92 -0.71 10.78 16 15 O -0.60 -11.54 15.66 5.29 0.08 -11.46 16 16 N -0.62 -7.66 2.23 -178.05 -0.40 -8.05 16 17 C 0.13 1.33 6.11 -2.76 -0.02 1.32 16 18 C -0.13 -0.98 5.71 -27.11 -0.15 -1.14 16 19 C -0.12 -0.97 5.51 -28.01 -0.15 -1.13 16 20 C -0.11 -0.90 4.29 -29.79 -0.13 -1.03 16 21 C -0.10 -0.97 1.38 -92.47 -0.13 -1.10 16 22 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 23 C -0.12 -1.13 2.65 -89.05 -0.24 -1.37 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 C -0.15 -1.40 6.11 -25.16 -0.15 -1.55 16 26 C 0.04 0.52 7.64 37.93 0.29 0.81 16 27 O -0.37 -5.71 11.65 -35.23 -0.41 -6.12 16 28 C 0.05 0.60 6.03 37.93 0.23 0.83 16 29 C 0.11 1.17 4.33 -4.08 -0.02 1.16 16 30 H 0.26 6.99 6.78 -40.82 -0.28 6.71 16 31 H 0.38 8.66 6.73 -40.82 -0.27 8.39 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.41 6.75 3.78 -40.82 -0.15 6.60 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.43 7.31 -51.93 -0.38 0.05 16 39 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.48 6.21 -51.93 -0.32 0.16 16 42 H 0.06 0.42 7.35 -51.93 -0.38 0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.68 6.44 -51.93 -0.33 0.35 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 1.21 6.10 -51.93 -0.32 0.90 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.08 0.87 5.31 -51.93 -0.28 0.59 16 50 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 382.34 15.07 5.76 5.76 Total: -1.00 -32.95 382.34 -8.87 -41.82 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -7.71 Total: 15.63 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -1.54 Total: 8.66 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.05 Total: -58.45 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.25 Total: -32.21 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.09 Total: 18.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.95 -8.87 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894820323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.282 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds