Wall clock time and date at job start Sat Apr 11 2020 05:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00033 * 2 1 4 4 H 1.48494 * 109.47146 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47109 * 120.00008 * 3 2 1 6 6 H 1.48501 * 109.46992 * 239.99696 * 3 2 1 7 7 C 1.38946 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99985 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00496 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00285 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00121 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99901 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46990 * 180.02562 * 12 10 9 14 14 C 1.34775 * 120.00037 * 179.97438 * 13 12 10 15 15 O 1.21587 * 119.99980 * 355.01761 * 14 13 12 16 16 N 1.34780 * 120.00297 * 175.01119 * 14 13 12 17 17 C 1.47592 * 118.64614 * 184.90290 * 16 14 13 18 18 C 1.54299 * 111.94494 * 137.78056 * 17 16 14 19 19 C 1.50887 * 110.23390 * 319.70106 * 18 17 16 20 20 C 1.52565 * 109.35625 * 91.79469 * 19 18 17 21 21 C 1.47085 * 114.33146 * 274.98767 * 20 19 18 22 22 H 1.09005 * 109.32974 * 302.54633 * 21 20 19 23 23 C 1.52995 * 109.19362 * 182.97546 * 21 20 19 24 24 H 1.08996 * 110.45613 * 298.51783 * 23 21 20 25 25 C 1.54511 * 110.50933 * 61.12134 * 23 21 20 26 26 C 1.54479 * 104.06157 * 118.64654 * 25 23 21 27 27 O 1.44432 * 104.80618 * 23.97987 * 26 25 23 28 28 C 1.44643 * 105.36359 * 319.56661 * 27 26 25 29 29 C 1.44580 * 118.63736 * 5.17480 * 16 14 13 30 30 H 0.97009 * 120.00290 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99998 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.47025 * 300.00028 * 12 10 9 33 33 H 1.09000 * 109.47132 * 59.99855 * 12 10 9 34 34 H 0.97000 * 120.00006 * 359.97438 * 13 12 10 35 35 H 1.09005 * 108.94823 * 258.57951 * 17 16 14 36 36 H 1.09003 * 108.94789 * 17.20576 * 17 16 14 37 37 H 1.09003 * 109.37034 * 199.42500 * 18 17 16 38 38 H 1.08997 * 109.12100 * 79.82394 * 18 17 16 39 39 H 1.09003 * 109.48814 * 331.83326 * 19 18 17 40 40 H 1.08998 * 109.48667 * 211.76620 * 19 18 17 41 41 H 1.09001 * 108.50705 * 153.73546 * 20 19 18 42 42 H 1.09005 * 108.39117 * 36.15659 * 20 19 18 43 43 H 1.08999 * 110.51023 * 237.29129 * 25 23 21 44 44 H 1.08999 * 110.50928 * 359.87071 * 25 23 21 45 45 H 1.09001 * 110.37636 * 142.80894 * 26 25 23 46 46 H 1.09003 * 110.37622 * 265.15150 * 26 25 23 47 47 H 1.08999 * 110.34273 * 281.58642 * 28 27 26 48 48 H 1.09000 * 110.50858 * 159.18696 * 28 27 26 49 49 H 1.08993 * 109.45483 * 30.74311 * 29 16 14 50 50 H 1.09005 * 109.44615 * 150.69451 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 1.2831 2.7464 -0.0006 5 1 3.1018 1.6963 1.2125 6 1 3.1019 1.6963 -1.2125 7 6 2.0087 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7463 -7.2472 0.0027 15 8 0.5547 -7.4706 0.0947 16 7 2.6179 -8.2703 -0.0983 17 6 2.0878 -9.6436 -0.2046 18 6 2.8530 -10.4776 -1.2532 19 6 3.1600 -9.6354 -2.4669 20 6 4.5317 -8.9887 -2.2999 21 6 4.5191 -7.7284 -1.5416 22 1 3.8492 -7.0204 -2.0296 23 6 5.9339 -7.1469 -1.5090 24 1 6.6163 -7.8331 -1.0075 25 6 6.4274 -6.8429 -2.9412 26 6 6.6701 -5.3173 -2.9387 27 8 6.8940 -4.9815 -1.5519 28 6 5.9375 -5.7707 -0.8073 29 6 4.0338 -7.9775 -0.0921 30 1 -0.4851 -0.8401 0.0004 31 1 0.3532 -2.3907 0.0005 32 1 0.6173 -4.9205 0.8914 33 1 0.6166 -4.9209 -0.8886 34 1 3.1493 -5.7993 0.0012 35 1 2.1685 -10.1303 0.7674 36 1 1.0364 -9.5961 -0.4885 37 1 2.2442 -11.3315 -1.5503 38 1 3.7854 -10.8335 -0.8150 39 1 2.4022 -8.8590 -2.5719 40 1 3.1609 -10.2658 -3.3561 41 1 4.9448 -8.7931 -3.2894 42 1 5.1846 -9.6948 -1.7868 43 1 7.3551 -7.3769 -3.1469 44 1 5.6643 -7.1090 -3.6726 45 1 7.5488 -5.0718 -3.5351 46 1 5.7936 -4.7929 -3.3193 47 1 4.9484 -5.3156 -0.8594 48 1 6.2539 -5.8748 0.2306 49 1 4.2179 -7.0881 0.5102 50 1 4.5771 -8.8220 0.3319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894820323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:43 Heat of formation + Delta-G solvation = -137.754561 kcal Electronic energy + Delta-G solvation = -31670.760388 eV Core-core repulsion = 27503.710210 eV Total energy + Delta-G solvation = -4167.050177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02153 -40.66617 -40.21018 -38.64460 -36.66469 -35.70396 -35.37049 -34.33096 -33.23249 -31.58717 -30.09293 -29.22081 -27.38137 -26.55500 -25.96713 -23.65917 -23.22946 -21.86452 -21.60979 -20.94357 -20.66776 -20.08979 -19.43997 -17.93394 -17.70730 -17.43894 -17.07863 -16.80294 -16.76319 -16.37803 -16.00073 -15.85880 -15.50420 -15.44038 -15.28289 -14.87325 -14.64775 -14.39118 -14.19992 -13.79654 -13.73992 -13.57769 -13.40045 -13.35399 -13.09869 -12.81234 -12.54569 -12.36380 -12.05123 -11.96070 -11.95132 -11.92690 -11.66514 -11.58822 -11.51776 -11.37512 -11.24416 -11.14605 -10.78181 -10.59180 -10.37466 -10.18338 -9.55073 -8.97175 -6.12537 1.45829 1.46669 1.55031 1.82208 1.86187 2.00467 2.38221 2.72493 2.98500 3.03898 3.12339 3.44738 3.55719 3.82371 3.86517 3.95081 3.96994 4.04683 4.08742 4.15494 4.25165 4.30711 4.32485 4.38384 4.42964 4.48187 4.53918 4.66120 4.74261 4.80425 4.82381 4.82498 4.91729 4.96499 5.07361 5.10465 5.17167 5.22457 5.27493 5.33474 5.39470 5.46831 5.56545 5.63009 5.80738 5.84691 5.89678 6.45634 6.61821 6.81787 7.31915 7.41094 7.74088 8.49489 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.003549 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.695371 B = 7888.284500 C = 9823.365552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.038 4.038 3 Si 1.133 2.867 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.409 4.409 8 H 0.080 0.920 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.610 6.610 12 C 0.138 3.862 13 N -0.728 5.728 14 C 0.698 3.302 15 O -0.629 6.629 16 N -0.610 5.610 17 C 0.124 3.876 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.089 4.089 22 H 0.044 0.956 23 C -0.103 4.103 24 H 0.112 0.888 25 C -0.140 4.140 26 C 0.033 3.967 27 O -0.403 6.403 28 C 0.040 3.960 29 C 0.109 3.891 30 H 0.260 0.740 31 H 0.386 0.614 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.038 0.962 47 H 0.040 0.960 48 H 0.094 0.906 49 H 0.060 0.940 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.049 -22.857 -5.085 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.237 4.237 3 Si 0.953 3.047 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.496 6.496 12 C 0.009 3.991 13 N -0.388 5.388 14 C 0.399 3.601 15 O -0.511 6.511 16 N -0.346 5.346 17 C 0.003 3.997 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.148 4.148 21 C -0.109 4.109 22 H 0.063 0.937 23 C -0.122 4.122 24 H 0.130 0.870 25 C -0.178 4.178 26 C -0.044 4.044 27 O -0.323 6.323 28 C -0.037 4.037 29 C -0.014 4.014 30 H 0.071 0.929 31 H 0.220 0.780 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.104 0.896 45 H 0.124 0.876 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.112 0.888 49 H 0.079 0.921 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.977 -21.231 -4.940 24.406 hybrid contribution -0.606 -1.056 0.017 1.218 sum 10.371 -22.287 -4.923 25.070 Atomic orbital electron populations 1.70967 1.07108 1.29658 1.47308 1.27862 0.96605 1.05402 0.93857 0.82641 0.73833 0.70229 0.78045 1.19765 1.19645 1.19725 1.20556 0.94106 0.85157 1.54026 0.90238 1.41859 1.08791 1.05297 1.65039 1.20348 0.88264 0.85602 0.83377 1.90490 1.14835 1.87326 1.56986 1.20609 0.91208 0.83393 1.03910 1.44994 1.10970 1.03498 1.79384 1.16084 0.85131 0.80993 0.77889 1.90857 1.15961 1.84456 1.59851 1.46878 1.05547 1.05800 1.76337 1.21977 0.98540 0.78902 1.00317 1.21842 1.01768 0.97748 0.94505 1.21038 0.96788 0.98821 0.98690 1.20519 0.97592 0.95761 1.00895 1.20839 0.95184 0.98504 0.96373 0.93703 1.22534 0.96818 0.96217 0.96587 0.86966 1.23024 1.03206 0.94866 0.96662 1.23593 1.01513 0.95942 0.83344 1.89123 1.57497 1.66900 1.18753 1.23696 0.92403 0.90575 0.96996 1.21796 0.80408 1.02712 0.96510 0.92881 0.77956 0.89114 0.89213 0.75196 0.90759 0.91548 0.89059 0.89336 0.94773 0.90331 0.91182 0.89593 0.88264 0.89553 0.87627 0.94321 0.94200 0.88760 0.92136 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.86 13.68 21.66 0.30 -50.56 16 2 C -0.04 -2.06 5.50 84.93 0.47 -1.59 16 3 Si 1.13 48.19 29.92 68.60 2.05 50.25 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.41 -23.07 9.68 84.04 0.81 -22.26 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -28.97 5.28 -306.98 -1.62 -30.59 16 10 C 0.44 20.57 7.85 87.66 0.69 21.25 16 11 O -0.61 -31.82 14.81 -3.07 -0.05 -31.87 16 12 C 0.14 5.26 6.16 85.63 0.53 5.79 16 13 N -0.73 -25.47 5.36 -482.28 -2.59 -28.05 16 14 C 0.70 23.11 8.19 179.05 1.47 24.58 16 15 O -0.63 -24.83 15.66 -3.99 -0.06 -24.90 16 16 N -0.61 -14.46 2.23 -835.48 -1.86 -16.32 16 17 C 0.12 2.32 6.11 86.61 0.53 2.85 16 18 C -0.12 -1.39 5.71 30.35 0.17 -1.21 16 19 C -0.12 -1.63 5.51 29.76 0.16 -1.47 16 20 C -0.11 -1.38 4.29 28.61 0.12 -1.26 16 21 C -0.09 -1.58 1.38 -11.99 -0.02 -1.60 16 22 H 0.04 1.12 8.11 -2.38 -0.02 1.10 16 23 C -0.10 -1.79 2.65 -9.78 -0.03 -1.81 16 24 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 25 C -0.14 -2.30 6.11 31.61 0.19 -2.11 16 26 C 0.03 0.78 7.64 72.48 0.55 1.33 16 27 O -0.40 -12.62 11.65 -148.98 -1.74 -14.35 16 28 C 0.04 1.08 6.03 72.48 0.44 1.52 16 29 C 0.11 2.05 4.33 87.38 0.38 2.43 16 30 H 0.26 14.11 6.78 -92.70 -0.63 13.48 16 31 H 0.39 18.24 6.73 -92.70 -0.62 17.61 16 32 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.41 14.13 3.78 -92.71 -0.35 13.78 16 35 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.07 1.58 7.01 -2.39 -0.02 1.56 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.68 7.31 -2.39 -0.02 0.66 16 39 H 0.03 0.72 7.49 -2.39 -0.02 0.70 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.81 6.21 -2.39 -0.01 0.80 16 42 H 0.09 0.71 7.35 -2.38 -0.02 0.69 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.31 6.44 -2.39 -0.02 1.29 16 45 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.04 1.36 6.10 -2.39 -0.01 1.34 16 48 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.06 1.35 5.31 -2.39 -0.01 1.34 16 50 H 0.12 1.42 8.06 -2.38 -0.02 1.40 16 Total: -1.00 -74.36 382.34 1.04 -73.32 By element: Atomic # 1 Polarization: 46.51 SS G_CDS: 0.14 Total: 46.65 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 6.47 Total: 26.44 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -5.77 Total: -125.53 kcal Atomic # 8 Polarization: -69.27 SS G_CDS: -1.84 Total: -71.12 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.05 Total: 50.25 kcal Total: -74.36 1.04 -73.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894820323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.439 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds