Wall clock time and date at job start Sat Apr 11 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48504 * 109.47324 * 240.00134 * 3 2 1 5 5 H 1.48495 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47071 * 120.00173 * 3 2 1 7 7 C 1.37878 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00457 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99953 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47280 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99838 * 170.00027 * 10 9 7 12 12 C 1.53242 * 109.35855 * 187.23749 * 11 10 9 13 13 N 1.47083 * 108.51931 * 306.20838 * 12 11 10 14 14 C 1.34780 * 120.86188 * 231.11953 * 13 12 11 15 15 O 1.21591 * 119.99986 * 174.79993 * 14 13 12 16 16 N 1.34770 * 120.00052 * 354.79769 * 14 13 12 17 17 C 1.46495 * 120.00037 * 184.97489 * 16 14 13 18 18 C 1.53001 * 109.47232 * 180.02562 * 17 16 14 19 19 H 1.09006 * 110.36445 * 59.30035 * 18 17 16 20 20 C 1.54924 * 110.41234 * 181.64566 * 18 17 16 21 21 C 1.55079 * 101.24555 * 156.51201 * 20 18 17 22 22 H 1.09003 * 114.48558 * 204.39542 * 21 20 18 23 23 C 1.54776 * 108.38895 * 76.28504 * 21 20 18 24 24 O 1.44456 * 103.44850 * 215.40893 * 23 21 20 25 25 C 1.43829 * 106.51671 * 41.59206 * 24 23 21 26 26 C 1.54165 * 107.12974 * 330.56844 * 25 24 23 27 27 H 1.09000 * 112.45409 * 244.04791 * 26 25 24 28 28 O 1.43215 * 109.01816 * 119.61983 * 26 25 24 29 29 C 1.47085 * 118.25932 * 51.13970 * 13 12 11 30 30 C 1.46901 * 110.99723 * 294.29653 * 10 9 7 31 31 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47623 * 59.99531 * 9 7 2 33 33 H 1.09005 * 109.47388 * 299.99962 * 9 7 2 34 34 H 1.08998 * 109.49252 * 307.20709 * 11 10 9 35 35 H 1.09003 * 109.49538 * 67.26801 * 11 10 9 36 36 H 1.09001 * 109.62792 * 65.89283 * 12 11 10 37 37 H 1.08995 * 109.63131 * 186.47281 * 12 11 10 38 38 H 0.97002 * 119.99661 * 4.97897 * 16 14 13 39 39 H 1.08996 * 109.47401 * 300.00357 * 17 16 14 40 40 H 1.09006 * 109.47288 * 60.00579 * 17 16 14 41 41 H 1.08996 * 111.05876 * 274.60896 * 20 18 17 42 42 H 1.09000 * 111.05181 * 38.59822 * 20 18 17 43 43 H 1.08997 * 110.62417 * 333.89898 * 23 21 20 44 44 H 1.09009 * 110.62569 * 96.75540 * 23 21 20 45 45 H 1.08993 * 109.90558 * 211.19124 * 25 24 23 46 46 H 1.08998 * 109.89980 * 89.94067 * 25 24 23 47 47 H 1.08994 * 109.63058 * 189.11845 * 29 13 12 48 48 H 1.09000 * 109.78358 * 68.63709 * 29 13 12 49 49 H 1.08999 * 109.49458 * 292.70696 * 30 10 9 50 50 H 1.09006 * 109.49279 * 52.76490 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5210 -4.8935 0.2376 12 6 2.5632 -6.0037 0.4101 13 7 3.4614 -5.9863 -0.7545 14 6 3.7123 -7.1127 -1.4510 15 8 4.3805 -7.0639 -2.4656 16 7 3.2225 -8.2929 -1.0227 17 6 3.5844 -9.5313 -1.7167 18 6 2.8988 -10.7170 -1.0349 19 1 1.8162 -10.5910 -1.0530 20 6 3.2998 -12.0439 -1.7268 21 6 3.0475 -13.0667 -0.5888 22 1 3.6272 -13.9861 -0.6709 23 6 1.5220 -13.3010 -0.4722 24 8 1.3171 -13.4801 0.9465 25 6 2.1381 -12.5000 1.6052 26 6 3.3526 -12.2376 0.6926 27 1 4.2931 -12.5378 1.1547 28 8 3.3646 -10.8555 0.3176 29 6 4.0788 -4.7079 -1.1388 30 6 2.9765 -3.6492 -1.2505 31 1 -0.4850 0.8400 0.0004 32 1 0.6239 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 0.9160 -4.8191 1.1412 35 1 0.8790 -5.1261 -0.6120 36 1 3.1389 -5.8275 1.3187 37 1 2.0623 -6.9697 0.4723 38 1 2.6303 -8.3224 -0.2551 39 1 3.2608 -9.4734 -2.7559 40 1 4.6655 -9.6659 -1.6797 41 1 2.6608 -12.2461 -2.5864 42 1 4.3507 -12.0326 -2.0161 43 1 0.9715 -12.4322 -0.8330 44 1 1.2278 -14.1956 -1.0212 45 1 2.4737 -12.8840 2.5685 46 1 1.5740 -11.5781 1.7465 47 1 4.5799 -4.8177 -2.1005 48 1 4.8020 -4.4050 -0.3816 49 1 2.3146 -3.8994 -2.0796 50 1 3.4267 -2.6721 -1.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926678973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:47 Heat of formation + Delta-G solvation = -93.945035 kcal Electronic energy + Delta-G solvation = -30138.513623 eV Core-core repulsion = 25973.363169 eV Total energy + Delta-G solvation = -4165.150454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39900 -40.14491 -37.92250 -37.43157 -34.84133 -34.36233 -33.13984 -32.38625 -31.12885 -30.42962 -28.85739 -28.03386 -26.02449 -25.21160 -23.61647 -23.04859 -22.13095 -21.65037 -21.28666 -20.63879 -19.27653 -18.11048 -17.39593 -16.88636 -16.46430 -16.35236 -16.17997 -15.76016 -15.47047 -15.12950 -14.98207 -14.63887 -14.44418 -14.01535 -13.95537 -13.72653 -13.64924 -13.48528 -13.39890 -12.80819 -12.61518 -12.37245 -12.18013 -11.97773 -11.88753 -11.74279 -11.55301 -11.33140 -11.26949 -11.13165 -10.82205 -10.73999 -10.59410 -10.49360 -10.43025 -9.99389 -9.98557 -9.83378 -9.28170 -9.16401 -8.47076 -8.30236 -7.31182 -6.05256 -4.07043 2.66858 3.02857 3.32095 3.33044 3.37005 3.38368 3.39941 3.73040 3.90464 4.12439 4.14241 4.37454 4.40492 4.41841 4.48690 4.64522 4.75955 4.79890 4.81871 5.03032 5.17277 5.23556 5.25213 5.29361 5.30346 5.31687 5.35389 5.39021 5.45566 5.54034 5.60498 5.68922 5.84433 5.96136 6.05976 6.12336 6.21319 6.39467 6.44272 6.53474 6.57660 6.71163 7.07576 7.23184 7.29383 7.75111 8.01053 8.03423 8.13767 8.48810 8.69148 8.99978 9.57410 11.05547 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.002008 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.834807 B =13940.339832 C =14624.719751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.119 3.881 13 N -0.624 5.624 14 C 0.708 3.292 15 O -0.599 6.599 16 N -0.746 5.746 17 C 0.146 3.854 18 C 0.065 3.935 19 H 0.079 0.921 20 C -0.140 4.140 21 C -0.153 4.153 22 H 0.114 0.886 23 C 0.047 3.953 24 O -0.374 6.374 25 C 0.027 3.973 26 C 0.050 3.950 27 H 0.111 0.889 28 O -0.361 6.361 29 C 0.133 3.867 30 C 0.050 3.950 31 H 0.262 0.738 32 H -0.009 1.009 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.070 0.930 49 H 0.024 0.976 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 -28.724 -0.466 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.361 5.361 14 C 0.410 3.590 15 O -0.478 6.478 16 N -0.405 5.405 17 C 0.022 3.978 18 C 0.007 3.993 19 H 0.096 0.904 20 C -0.178 4.178 21 C -0.172 4.172 22 H 0.132 0.868 23 C -0.030 4.030 24 O -0.293 6.293 25 C -0.050 4.050 26 C -0.008 4.008 27 H 0.129 0.871 28 O -0.280 6.280 29 C 0.010 3.990 30 C -0.079 4.079 31 H 0.072 0.928 32 H 0.009 0.991 33 H 0.049 0.951 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.235 0.765 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.042 0.958 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.535 -28.452 -0.581 28.991 hybrid contribution -0.571 0.778 -0.383 1.038 sum 4.963 -27.674 -0.964 28.132 Atomic orbital electron populations 1.69947 1.06089 1.26954 1.50807 1.24994 0.94877 0.99369 0.95360 0.86541 0.79418 0.82645 0.78694 1.20224 1.21398 1.20131 1.21106 0.93481 0.89864 1.50350 0.91807 1.19720 0.89996 0.87216 0.96134 1.62083 1.27871 1.02440 1.33606 1.22381 0.94746 0.90963 1.00808 1.21757 0.91802 0.98149 0.88730 1.47383 1.49570 1.07881 1.31267 1.15798 0.80083 0.80308 0.82843 1.90882 1.45610 1.85668 1.25622 1.45105 1.54226 1.05089 1.36062 1.21236 1.00133 0.80875 0.95591 1.23374 0.98588 0.94975 0.82370 0.90359 1.23168 1.03908 0.92615 0.98081 1.24199 0.98234 0.99936 0.94837 0.86768 1.23719 0.93554 1.02456 0.83236 1.88979 1.66513 1.56081 1.17697 1.23791 0.91098 0.93306 0.96763 1.24134 0.99482 0.82135 0.95040 0.87113 1.88554 1.86851 1.23749 1.28876 1.21730 0.95447 0.80572 1.01262 1.22367 0.95279 0.99217 0.91008 0.92837 0.99142 0.95090 0.90110 0.95602 0.90626 0.91290 0.76468 0.90209 0.90972 0.88884 0.89223 0.91604 0.88394 0.88782 0.90909 0.89338 0.91166 0.95756 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.03 8.41 -34.44 -0.29 -14.32 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.95 4.72 -4.97 -0.02 4.93 16 10 N -0.53 -11.19 4.62 -235.75 -1.09 -12.28 16 11 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 12 C 0.12 1.65 6.54 -3.60 -0.02 1.62 16 13 N -0.62 -9.82 3.01 -178.19 -0.54 -10.36 16 14 C 0.71 11.23 8.31 -86.92 -0.72 10.51 16 15 O -0.60 -11.45 15.80 5.29 0.08 -11.36 16 16 N -0.75 -8.88 5.41 -65.23 -0.35 -9.23 16 17 C 0.15 1.40 5.42 -4.04 -0.02 1.38 16 18 C 0.06 0.45 3.05 -25.72 -0.08 0.38 16 19 H 0.08 0.52 7.15 -51.93 -0.37 0.15 16 20 C -0.14 -0.67 5.91 -24.62 -0.15 -0.81 16 21 C -0.15 -0.75 4.43 -87.18 -0.39 -1.14 16 22 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 23 C 0.05 0.27 6.93 38.09 0.26 0.53 16 24 O -0.37 -3.14 11.55 -35.23 -0.41 -3.55 16 25 C 0.03 0.19 7.46 37.77 0.28 0.47 16 26 C 0.05 0.32 4.61 -24.72 -0.11 0.21 16 27 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 28 O -0.36 -3.04 10.46 -35.23 -0.37 -3.41 16 29 C 0.13 2.24 6.61 -3.60 -0.02 2.22 16 30 C 0.05 0.99 5.46 -3.70 -0.02 0.97 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H -0.01 -0.26 8.13 -51.93 -0.42 -0.68 16 33 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 34 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.75 5.74 -51.93 -0.30 0.45 16 38 H 0.40 4.13 5.99 -40.82 -0.24 3.89 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.31 8.06 -51.93 -0.42 -0.10 16 42 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 43 H 0.07 0.37 6.61 -51.93 -0.34 0.02 16 44 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 47 H 0.09 1.51 7.04 -51.93 -0.37 1.15 16 48 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -33.70 388.12 -10.73 -44.43 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.21 Total: 0.11 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.42 Total: 9.09 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -1.24 Total: -57.58 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.69 Total: -18.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.70 -10.73 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926678973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.516 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds