Wall clock time and date at job start Sat Apr 11 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48504 * 109.47324 * 240.00134 * 3 2 1 5 5 H 1.48495 * 109.47197 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47071 * 120.00173 * 3 2 1 7 7 C 1.37878 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00457 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99953 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47280 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99838 * 170.00027 * 10 9 7 12 12 C 1.53242 * 109.35855 * 187.23749 * 11 10 9 13 13 N 1.47083 * 108.51931 * 306.20838 * 12 11 10 14 14 C 1.34780 * 120.86188 * 231.11953 * 13 12 11 15 15 O 1.21591 * 119.99986 * 174.79993 * 14 13 12 16 16 N 1.34770 * 120.00052 * 354.79769 * 14 13 12 17 17 C 1.46495 * 120.00037 * 184.97489 * 16 14 13 18 18 C 1.53001 * 109.47232 * 180.02562 * 17 16 14 19 19 H 1.09006 * 110.36445 * 59.30035 * 18 17 16 20 20 C 1.54924 * 110.41234 * 181.64566 * 18 17 16 21 21 C 1.55079 * 101.24555 * 156.51201 * 20 18 17 22 22 H 1.09003 * 114.48558 * 204.39542 * 21 20 18 23 23 C 1.54776 * 108.38895 * 76.28504 * 21 20 18 24 24 O 1.44456 * 103.44850 * 215.40893 * 23 21 20 25 25 C 1.43829 * 106.51671 * 41.59206 * 24 23 21 26 26 C 1.54165 * 107.12974 * 330.56844 * 25 24 23 27 27 H 1.09000 * 112.45409 * 244.04791 * 26 25 24 28 28 O 1.43215 * 109.01816 * 119.61983 * 26 25 24 29 29 C 1.47085 * 118.25932 * 51.13970 * 13 12 11 30 30 C 1.46901 * 110.99723 * 294.29653 * 10 9 7 31 31 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47623 * 59.99531 * 9 7 2 33 33 H 1.09005 * 109.47388 * 299.99962 * 9 7 2 34 34 H 1.08998 * 109.49252 * 307.20709 * 11 10 9 35 35 H 1.09003 * 109.49538 * 67.26801 * 11 10 9 36 36 H 1.09001 * 109.62792 * 65.89283 * 12 11 10 37 37 H 1.08995 * 109.63131 * 186.47281 * 12 11 10 38 38 H 0.97002 * 119.99661 * 4.97897 * 16 14 13 39 39 H 1.08996 * 109.47401 * 300.00357 * 17 16 14 40 40 H 1.09006 * 109.47288 * 60.00579 * 17 16 14 41 41 H 1.08996 * 111.05876 * 274.60896 * 20 18 17 42 42 H 1.09000 * 111.05181 * 38.59822 * 20 18 17 43 43 H 1.08997 * 110.62417 * 333.89898 * 23 21 20 44 44 H 1.09009 * 110.62569 * 96.75540 * 23 21 20 45 45 H 1.08993 * 109.90558 * 211.19124 * 25 24 23 46 46 H 1.08998 * 109.89980 * 89.94067 * 25 24 23 47 47 H 1.08994 * 109.63058 * 189.11845 * 29 13 12 48 48 H 1.09000 * 109.78358 * 68.63709 * 29 13 12 49 49 H 1.08999 * 109.49458 * 292.70696 * 30 10 9 50 50 H 1.09006 * 109.49279 * 52.76490 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5210 -4.8935 0.2376 12 6 2.5632 -6.0037 0.4101 13 7 3.4614 -5.9863 -0.7545 14 6 3.7123 -7.1127 -1.4510 15 8 4.3805 -7.0639 -2.4656 16 7 3.2225 -8.2929 -1.0227 17 6 3.5844 -9.5313 -1.7167 18 6 2.8988 -10.7170 -1.0349 19 1 1.8162 -10.5910 -1.0530 20 6 3.2998 -12.0439 -1.7268 21 6 3.0475 -13.0667 -0.5888 22 1 3.6272 -13.9861 -0.6709 23 6 1.5220 -13.3010 -0.4722 24 8 1.3171 -13.4801 0.9465 25 6 2.1381 -12.5000 1.6052 26 6 3.3526 -12.2376 0.6926 27 1 4.2931 -12.5378 1.1547 28 8 3.3646 -10.8555 0.3176 29 6 4.0788 -4.7079 -1.1388 30 6 2.9765 -3.6492 -1.2505 31 1 -0.4850 0.8400 0.0004 32 1 0.6239 -2.5567 -0.8903 33 1 0.6247 -2.5571 0.8897 34 1 0.9160 -4.8191 1.1412 35 1 0.8790 -5.1261 -0.6120 36 1 3.1389 -5.8275 1.3187 37 1 2.0623 -6.9697 0.4723 38 1 2.6303 -8.3224 -0.2551 39 1 3.2608 -9.4734 -2.7559 40 1 4.6655 -9.6659 -1.6797 41 1 2.6608 -12.2461 -2.5864 42 1 4.3507 -12.0326 -2.0161 43 1 0.9715 -12.4322 -0.8330 44 1 1.2278 -14.1956 -1.0212 45 1 2.4737 -12.8840 2.5685 46 1 1.5740 -11.5781 1.7465 47 1 4.5799 -4.8177 -2.1005 48 1 4.8020 -4.4050 -0.3816 49 1 2.3146 -3.8994 -2.0796 50 1 3.4267 -2.6721 -1.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926678973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:46 Heat of formation + Delta-G solvation = -119.467076 kcal Electronic energy + Delta-G solvation = -30139.620342 eV Core-core repulsion = 25973.363169 eV Total energy + Delta-G solvation = -4166.257172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93708 -41.35446 -39.18612 -38.23578 -35.99488 -35.82691 -34.37831 -33.61756 -32.26078 -31.39482 -30.01546 -29.14938 -27.34053 -26.32045 -24.62491 -24.05754 -23.83448 -22.26301 -22.17518 -21.65016 -20.50010 -19.24773 -18.50040 -18.02846 -17.52491 -17.34444 -16.84673 -16.77926 -16.53024 -16.29910 -16.02293 -15.84611 -15.68056 -15.41571 -15.34367 -15.08897 -14.67163 -14.47785 -14.08023 -14.05494 -13.81406 -13.49188 -13.13203 -13.10024 -12.97597 -12.77642 -12.56026 -12.41346 -12.34615 -12.31231 -12.22678 -12.14941 -12.00179 -11.75052 -11.73864 -11.39738 -11.17118 -10.95568 -10.61012 -10.52161 -10.28499 -9.60668 -9.05213 -8.20501 -6.30393 1.42777 1.45544 1.53198 1.57214 2.07183 2.40884 2.48719 2.85551 2.96490 3.11594 3.21638 3.28602 3.63661 3.69282 3.88404 3.93446 3.98497 4.01194 4.05566 4.12849 4.18048 4.23660 4.24828 4.38296 4.42157 4.55989 4.61259 4.63910 4.70588 4.73274 4.82741 4.84017 4.87686 4.92828 4.94184 5.00418 5.01374 5.13278 5.16539 5.22112 5.41959 5.43922 5.63666 5.65416 5.89653 6.01606 6.03170 6.25200 6.57356 6.84779 6.89738 7.39265 7.48209 8.90421 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.002008 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.834807 B =13940.339832 C =14624.719751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.038 3.962 12 C 0.129 3.871 13 N -0.629 5.629 14 C 0.705 3.295 15 O -0.634 6.634 16 N -0.732 5.732 17 C 0.145 3.855 18 C 0.068 3.932 19 H 0.084 0.916 20 C -0.133 4.133 21 C -0.143 4.143 22 H 0.131 0.869 23 C 0.041 3.959 24 O -0.397 6.397 25 C 0.026 3.974 26 C 0.046 3.954 27 H 0.121 0.879 28 O -0.380 6.380 29 C 0.145 3.855 30 C 0.057 3.943 31 H 0.264 0.736 32 H -0.042 1.042 33 H 0.011 0.989 34 H 0.089 0.911 35 H 0.017 0.983 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.008 0.992 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -30.341 -0.140 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.263 5.263 11 C -0.091 4.091 12 C 0.006 3.994 13 N -0.365 5.365 14 C 0.406 3.594 15 O -0.516 6.516 16 N -0.390 5.390 17 C 0.021 3.979 18 C 0.011 3.989 19 H 0.102 0.898 20 C -0.171 4.171 21 C -0.162 4.162 22 H 0.149 0.851 23 C -0.035 4.035 24 O -0.316 6.316 25 C -0.051 4.051 26 C -0.012 4.012 27 H 0.139 0.861 28 O -0.300 6.300 29 C 0.021 3.979 30 C -0.072 4.072 31 H 0.073 0.927 32 H -0.025 1.025 33 H 0.029 0.971 34 H 0.108 0.892 35 H 0.036 0.964 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.246 0.754 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.121 0.879 46 H 0.081 0.919 47 H 0.105 0.895 48 H 0.098 0.902 49 H 0.027 0.973 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.618 -30.124 -0.232 30.843 hybrid contribution -0.958 1.204 -0.481 1.612 sum 5.660 -28.920 -0.713 29.477 Atomic orbital electron populations 1.70075 1.07731 1.27966 1.51722 1.25911 0.95736 1.03212 0.94815 0.85437 0.78131 0.77907 0.79155 1.19336 1.21048 1.19156 1.21437 0.93746 0.90941 1.50100 0.91588 1.19371 0.90006 0.88793 0.93523 1.62008 1.27054 1.03035 1.34157 1.22519 0.95735 0.90049 1.00813 1.21803 0.90850 0.98464 0.88299 1.47401 1.49824 1.07541 1.31769 1.15955 0.79967 0.81064 0.82392 1.90857 1.47283 1.86266 1.27184 1.45069 1.53322 1.04594 1.36035 1.21386 0.99969 0.80690 0.95902 1.23356 0.98464 0.94908 0.82200 0.89804 1.23175 1.04565 0.90984 0.98409 1.24201 0.97782 1.00313 0.93907 0.85121 1.23898 0.94207 1.03254 0.82171 1.88956 1.67041 1.56478 1.19166 1.23825 0.91150 0.92771 0.97379 1.24263 0.99635 0.81556 0.95762 0.86097 1.88527 1.86978 1.25062 1.29425 1.21496 0.94322 0.80427 1.01636 1.22289 0.95511 0.99553 0.89891 0.92706 1.02456 0.97120 0.89231 0.96423 0.89525 0.87712 0.75432 0.90090 0.91822 0.87111 0.88809 0.91648 0.86913 0.87945 0.91915 0.89532 0.90182 0.97343 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.52 -29.34 8.41 25.60 0.22 -29.12 16 8 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 9 C 0.21 11.03 4.72 85.56 0.40 11.43 16 10 N -0.54 -22.74 4.62 -899.79 -4.16 -26.90 16 11 C 0.04 1.27 5.62 86.38 0.49 1.76 16 12 C 0.13 3.29 6.54 86.35 0.56 3.86 16 13 N -0.63 -18.99 3.01 -835.92 -2.52 -21.50 16 14 C 0.70 21.48 8.31 179.06 1.49 22.97 16 15 O -0.63 -23.88 15.80 -4.00 -0.06 -23.95 16 16 N -0.73 -16.10 5.41 -478.55 -2.59 -18.69 16 17 C 0.14 2.54 5.42 86.38 0.47 3.00 16 18 C 0.07 0.82 3.05 31.25 0.10 0.91 16 19 H 0.08 0.93 7.15 -2.38 -0.02 0.91 16 20 C -0.13 -0.92 5.91 31.96 0.19 -0.73 16 21 C -0.14 -1.04 4.43 -8.56 -0.04 -1.08 16 22 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 23 C 0.04 0.38 6.93 72.59 0.50 0.88 16 24 O -0.40 -6.13 11.55 -148.98 -1.72 -7.85 16 25 C 0.03 0.32 7.46 72.38 0.54 0.86 16 26 C 0.05 0.50 4.61 31.90 0.15 0.64 16 27 H 0.12 1.04 8.14 -2.39 -0.02 1.03 16 28 O -0.38 -5.67 10.46 -148.98 -1.56 -7.23 16 29 C 0.14 4.82 6.61 86.35 0.57 5.39 16 30 C 0.06 2.26 5.46 86.38 0.47 2.73 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H -0.04 -2.46 8.13 -2.38 -0.02 -2.48 16 33 H 0.01 0.60 7.97 -2.38 -0.02 0.58 16 34 H 0.09 2.84 7.99 -2.39 -0.02 2.82 16 35 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.10 1.94 5.74 -2.39 -0.01 1.93 16 38 H 0.41 7.43 5.99 -92.71 -0.56 6.87 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.11 0.40 8.06 -2.39 -0.02 0.38 16 42 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 43 H 0.07 0.60 6.61 -2.39 -0.02 0.58 16 44 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.06 0.90 7.92 -2.39 -0.02 0.88 16 47 H 0.09 2.95 7.04 -2.39 -0.02 2.93 16 48 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 50 H 0.08 3.46 6.67 -2.38 -0.02 3.44 16 Total: -1.00 -73.79 388.12 -3.34 -77.13 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.39 Total: 14.59 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 6.57 Total: 24.06 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -8.98 Total: -122.85 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -3.34 Total: -39.02 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -73.79 -3.34 -77.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926678973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.335 kcal (2) G-P(sol) polarization free energy of solvation -73.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds