Wall clock time and date at job start Sat Apr 11 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00534 * 2 1 4 4 H 1.48497 * 109.47424 * 240.00558 * 3 2 1 5 5 H 1.48505 * 109.46620 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47343 * 119.99936 * 3 2 1 7 7 C 1.38824 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99965 * 196.73482 * 7 2 1 9 9 N 1.36937 * 119.99884 * 16.73505 * 7 2 1 10 10 C 1.47153 * 121.06139 * 205.75580 * 9 7 2 11 11 C 1.53287 * 108.54970 * 231.14456 * 10 9 7 12 12 O 1.43100 * 109.22178 * 307.10372 * 11 10 9 13 13 C 1.42061 * 114.33101 * 61.15378 * 12 11 10 14 14 C 1.54495 * 110.38412 * 177.16469 * 13 12 11 15 15 C 1.55032 * 101.53284 * 276.07029 * 14 13 12 16 16 N 1.47487 * 104.89913 * 323.63184 * 15 14 13 17 17 C 1.34773 * 125.66557 * 204.03498 * 16 15 14 18 18 O 1.21275 * 120.00411 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99878 * 359.97438 * 17 16 15 20 20 N 1.46892 * 109.47267 * 179.97438 * 19 17 16 21 21 C 1.47019 * 111.00145 * 293.63463 * 20 19 17 22 22 C 1.53097 * 109.25560 * 177.60815 * 21 20 19 23 23 O 1.43013 * 109.26130 * 56.85061 * 22 21 20 24 24 C 1.43010 * 113.73732 * 301.32447 * 23 22 21 25 25 C 1.47019 * 111.00237 * 170.00234 * 20 19 17 26 26 C 1.47183 * 108.67326 * 24.01607 * 16 15 14 27 27 C 1.47306 * 121.06616 * 25.77347 * 9 7 2 28 28 H 0.96998 * 119.99702 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.62449 * 111.42504 * 10 9 7 30 30 H 1.08998 * 109.78375 * 350.95385 * 10 9 7 31 31 H 1.08998 * 109.51061 * 67.02935 * 11 10 9 32 32 H 1.09000 * 109.51033 * 187.17750 * 11 10 9 33 33 H 1.09005 * 111.01137 * 34.12350 * 14 13 12 34 34 H 1.08994 * 111.01293 * 158.00165 * 14 13 12 35 35 H 1.08999 * 110.34859 * 204.78267 * 15 14 13 36 36 H 1.08997 * 110.35450 * 82.48990 * 15 14 13 37 37 H 1.08999 * 109.47204 * 300.00515 * 19 17 16 38 38 H 1.09002 * 109.46942 * 59.99617 * 19 17 16 39 39 H 1.08992 * 109.50513 * 297.54160 * 21 20 19 40 40 H 1.09000 * 109.50120 * 57.67600 * 21 20 19 41 41 H 1.09008 * 109.50703 * 296.91358 * 22 21 20 42 42 H 1.09005 * 109.54115 * 176.80849 * 22 21 20 43 43 H 1.08995 * 109.51275 * 298.73611 * 24 23 22 44 44 H 1.08996 * 109.54309 * 178.62386 * 24 23 22 45 45 H 1.09007 * 109.49963 * 302.32707 * 25 20 19 46 46 H 1.08992 * 109.50860 * 62.45393 * 25 20 19 47 47 H 1.08998 * 109.91085 * 239.11448 * 26 16 15 48 48 H 1.09001 * 109.90930 * 117.85041 * 26 16 15 49 49 H 1.08998 * 109.67928 * 250.32383 * 27 9 7 50 50 H 1.09006 * 109.67746 * 10.87042 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0559 -1.2222 0.2688 9 7 1.3690 -2.3629 -0.3425 10 6 1.8392 -3.6653 0.1555 11 6 1.9922 -4.6169 -1.0364 12 8 0.7706 -4.6390 -1.7814 13 6 0.3927 -3.3814 -2.3233 14 6 -0.8949 -3.5233 -3.1653 15 6 -0.3235 -3.9877 -4.5296 16 7 0.9498 -3.2580 -4.6756 17 6 1.5653 -2.9770 -5.8412 18 8 2.6139 -2.3677 -5.8419 19 6 0.9505 -3.4200 -7.1439 20 7 1.8068 -2.9950 -8.2591 21 6 1.8344 -1.5295 -8.3735 22 6 2.7827 -1.1293 -9.5068 23 8 2.3609 -1.7592 -10.7195 24 6 2.3232 -3.1867 -10.6438 25 6 1.3701 -3.6079 -9.5221 26 6 1.4366 -2.8871 -3.3370 27 6 0.1867 -2.3476 -1.2211 28 1 -0.4849 0.8401 0.0004 29 1 1.1123 -4.0726 0.8582 30 1 2.8014 -3.5444 0.6532 31 1 2.8032 -4.2704 -1.6770 32 1 2.2164 -5.6203 -0.6747 33 1 -1.5576 -4.2781 -2.7418 34 1 -1.4066 -2.5657 -3.2613 35 1 -1.0068 -3.7230 -5.3365 36 1 -0.1454 -5.0629 -4.5198 37 1 0.8566 -4.5059 -7.1507 38 1 -0.0362 -2.9694 -7.2517 39 1 0.8315 -1.1626 -8.5914 40 1 2.1850 -1.0979 -7.4360 41 1 3.7960 -1.4495 -9.2637 42 1 2.7635 -0.0468 -9.6331 43 1 3.3229 -3.5667 -10.4338 44 1 1.9711 -3.5930 -11.5920 45 1 1.3817 -4.6934 -9.4229 46 1 0.3598 -3.2742 -9.7583 47 1 1.5391 -1.8043 -3.2662 48 1 2.3965 -3.3667 -3.1451 49 1 -0.7029 -2.5990 -0.6436 50 1 0.0706 -1.3580 -1.6631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972343594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:05 Heat of formation + Delta-G solvation = -68.946089 kcal Electronic energy + Delta-G solvation = -31502.184517 eV Core-core repulsion = 27338.118099 eV Total energy + Delta-G solvation = -4164.066418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.43541 -39.67079 -38.49402 -36.24369 -35.48862 -34.49737 -31.86756 -31.35287 -31.26298 -29.56248 -29.06705 -27.57813 -26.10661 -24.58108 -24.20312 -23.28890 -23.06566 -21.10865 -20.66936 -19.34445 -18.70140 -17.23915 -17.01457 -16.69265 -16.33609 -16.21839 -15.70607 -15.35715 -15.21251 -15.08074 -14.69518 -14.39655 -14.32337 -14.01120 -13.83459 -13.67498 -13.49030 -13.16251 -12.88715 -12.61227 -12.56057 -12.22627 -11.99091 -11.86110 -11.56703 -11.45787 -11.42070 -11.13908 -11.08025 -10.84984 -10.77677 -10.75579 -10.49116 -10.31697 -10.04021 -9.94866 -9.59655 -9.51951 -9.09508 -8.59458 -8.57019 -8.38637 -6.79176 -5.87880 -3.29991 2.76850 2.93831 3.35350 3.40947 3.43803 3.59408 3.73401 4.16718 4.41135 4.48630 4.64295 4.76386 4.79413 4.86994 4.92049 4.99236 5.05166 5.14851 5.19081 5.25455 5.32318 5.33740 5.36813 5.46217 5.50228 5.55003 5.62559 5.77042 5.78851 5.80143 5.81787 5.99949 6.05170 6.14649 6.20123 6.27742 6.44694 6.48419 6.58815 6.64596 6.70817 6.74804 6.94103 7.00593 7.37577 7.69436 7.70699 7.85483 8.28756 8.35034 9.07681 9.70603 10.27142 11.20701 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.003202 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.630133 B = 8742.915518 C =10061.854099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.044 3.956 12 O -0.376 6.376 13 C 0.085 3.915 14 C -0.117 4.117 15 C 0.102 3.898 16 N -0.616 5.616 17 C 0.525 3.475 18 O -0.525 6.525 19 C 0.043 3.957 20 N -0.520 5.520 21 C 0.012 3.988 22 C 0.066 3.934 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 C 0.100 3.900 27 C 0.164 3.836 28 H 0.256 0.744 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.038 0.962 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.033 0.967 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -9.650 -16.498 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.319 5.319 10 C -0.016 4.016 11 C -0.034 4.034 12 O -0.295 6.295 13 C 0.043 3.957 14 C -0.155 4.155 15 C -0.021 4.021 16 N -0.351 5.351 17 C 0.313 3.687 18 O -0.401 6.401 19 C -0.088 4.088 20 N -0.246 5.246 21 C -0.116 4.116 22 C -0.010 4.010 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 C -0.022 4.022 27 C 0.037 3.963 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.100 0.900 48 H 0.088 0.912 49 H 0.051 0.949 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.994 -9.352 -16.644 19.118 hybrid contribution -0.287 1.062 0.352 1.155 sum -1.280 -8.290 -16.292 18.325 Atomic orbital electron populations 1.69993 1.05215 1.25793 1.53921 1.25005 0.95348 0.98402 1.00723 0.86362 0.78990 0.83143 0.78316 1.20822 1.21523 1.20783 1.19146 0.92586 0.84407 1.42086 0.91355 1.44102 1.32801 1.01254 1.53705 1.21578 0.98707 0.87505 0.93841 1.23113 0.86425 0.99859 0.94029 1.87658 1.41571 1.30116 1.70140 1.22687 0.92450 0.86634 0.93880 1.22703 0.96682 1.03037 0.93120 1.22379 0.84855 0.96632 0.98284 1.48654 1.23919 1.56302 1.06241 1.20016 0.84854 0.79969 0.83905 1.90677 1.22455 1.40465 1.86531 1.21940 0.94981 1.02189 0.89709 1.61843 1.51462 1.08642 1.02632 1.22988 0.99105 0.87572 1.01902 1.22664 0.97497 0.97752 0.83130 1.87960 1.88650 1.19058 1.35100 1.22624 0.99126 0.81565 0.97881 1.22824 0.97892 1.00342 0.89973 1.22493 0.98236 1.01599 0.79908 1.21244 0.89376 0.96850 0.88804 0.93448 0.95515 0.91865 0.93446 0.89800 0.89017 0.89063 0.91104 0.91050 0.87875 0.91879 0.94412 0.87429 0.91938 0.88378 0.92160 0.88474 0.89526 0.93867 0.89953 0.91231 0.94884 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.12 55.49 0.62 -24.76 16 2 C 0.00 0.10 4.96 -17.43 -0.09 0.02 16 3 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.77 9.66 -15.05 -0.15 -6.92 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -14.44 2.97 -172.18 -0.51 -14.96 16 10 C 0.11 2.25 6.71 -3.54 -0.02 2.23 16 11 C 0.04 0.77 6.76 37.31 0.25 1.02 16 12 O -0.38 -6.89 10.26 -35.23 -0.36 -7.25 16 13 C 0.09 1.56 0.81 -89.73 -0.07 1.49 16 14 C -0.12 -1.67 6.21 -24.87 -0.15 -1.83 16 15 C 0.10 1.24 6.69 -2.43 -0.02 1.23 16 16 N -0.62 -9.67 3.33 -170.67 -0.57 -10.24 16 17 C 0.53 8.32 7.56 -10.98 -0.08 8.24 16 18 O -0.53 -10.34 14.68 5.56 0.08 -10.26 16 19 C 0.04 0.49 4.46 -4.98 -0.02 0.47 16 20 N -0.52 -6.30 4.46 -235.75 -1.05 -7.35 16 21 C 0.01 0.15 5.29 -3.71 -0.02 0.13 16 22 C 0.07 0.75 7.01 37.21 0.26 1.01 16 23 O -0.39 -4.50 10.83 -35.23 -0.38 -4.88 16 24 C 0.07 0.59 7.01 37.21 0.26 0.85 16 25 C 0.02 0.16 5.65 -3.71 -0.02 0.14 16 26 C 0.10 1.88 5.96 -3.32 -0.02 1.86 16 27 C 0.16 3.70 3.98 -3.85 -0.02 3.69 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 31 H 0.05 0.86 6.22 -51.93 -0.32 0.54 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.29 8.01 -51.93 -0.42 0.87 16 35 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.97 8.04 -51.93 -0.42 0.56 16 38 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.11 1.61 5.88 -51.93 -0.31 1.31 16 41 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 1.80 7.61 -51.93 -0.40 1.41 16 48 H 0.07 1.41 6.00 -51.93 -0.31 1.10 16 49 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.10 2.44 5.91 -51.93 -0.31 2.13 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -32.16 382.05 -9.66 -41.82 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.30 Total: 1.97 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 0.09 Total: 13.63 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -1.51 Total: -57.30 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.66 Total: -22.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.16 -9.66 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972343594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.128 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds