Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00534 * 2 1 4 4 H 1.48497 * 109.47424 * 240.00558 * 3 2 1 5 5 H 1.48505 * 109.46620 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47343 * 119.99936 * 3 2 1 7 7 C 1.38824 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99965 * 196.73482 * 7 2 1 9 9 N 1.36937 * 119.99884 * 16.73505 * 7 2 1 10 10 C 1.47153 * 121.06139 * 205.75580 * 9 7 2 11 11 C 1.53287 * 108.54970 * 231.14456 * 10 9 7 12 12 O 1.43100 * 109.22178 * 307.10372 * 11 10 9 13 13 C 1.42061 * 114.33101 * 61.15378 * 12 11 10 14 14 C 1.54495 * 110.38412 * 177.16469 * 13 12 11 15 15 C 1.55032 * 101.53284 * 276.07029 * 14 13 12 16 16 N 1.47487 * 104.89913 * 323.63184 * 15 14 13 17 17 C 1.34773 * 125.66557 * 204.03498 * 16 15 14 18 18 O 1.21275 * 120.00411 * 179.97438 * 17 16 15 19 19 C 1.50705 * 119.99878 * 359.97438 * 17 16 15 20 20 N 1.46892 * 109.47267 * 179.97438 * 19 17 16 21 21 C 1.47019 * 111.00145 * 293.63463 * 20 19 17 22 22 C 1.53097 * 109.25560 * 177.60815 * 21 20 19 23 23 O 1.43013 * 109.26130 * 56.85061 * 22 21 20 24 24 C 1.43010 * 113.73732 * 301.32447 * 23 22 21 25 25 C 1.47019 * 111.00237 * 170.00234 * 20 19 17 26 26 C 1.47183 * 108.67326 * 24.01607 * 16 15 14 27 27 C 1.47306 * 121.06616 * 25.77347 * 9 7 2 28 28 H 0.96998 * 119.99702 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.62449 * 111.42504 * 10 9 7 30 30 H 1.08998 * 109.78375 * 350.95385 * 10 9 7 31 31 H 1.08998 * 109.51061 * 67.02935 * 11 10 9 32 32 H 1.09000 * 109.51033 * 187.17750 * 11 10 9 33 33 H 1.09005 * 111.01137 * 34.12350 * 14 13 12 34 34 H 1.08994 * 111.01293 * 158.00165 * 14 13 12 35 35 H 1.08999 * 110.34859 * 204.78267 * 15 14 13 36 36 H 1.08997 * 110.35450 * 82.48990 * 15 14 13 37 37 H 1.08999 * 109.47204 * 300.00515 * 19 17 16 38 38 H 1.09002 * 109.46942 * 59.99617 * 19 17 16 39 39 H 1.08992 * 109.50513 * 297.54160 * 21 20 19 40 40 H 1.09000 * 109.50120 * 57.67600 * 21 20 19 41 41 H 1.09008 * 109.50703 * 296.91358 * 22 21 20 42 42 H 1.09005 * 109.54115 * 176.80849 * 22 21 20 43 43 H 1.08995 * 109.51275 * 298.73611 * 24 23 22 44 44 H 1.08996 * 109.54309 * 178.62386 * 24 23 22 45 45 H 1.09007 * 109.49963 * 302.32707 * 25 20 19 46 46 H 1.08992 * 109.50860 * 62.45393 * 25 20 19 47 47 H 1.08998 * 109.91085 * 239.11448 * 26 16 15 48 48 H 1.09001 * 109.90930 * 117.85041 * 26 16 15 49 49 H 1.08998 * 109.67928 * 250.32383 * 27 9 7 50 50 H 1.09006 * 109.67746 * 10.87042 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0559 -1.2222 0.2688 9 7 1.3690 -2.3629 -0.3425 10 6 1.8392 -3.6653 0.1555 11 6 1.9922 -4.6169 -1.0364 12 8 0.7706 -4.6390 -1.7814 13 6 0.3927 -3.3814 -2.3233 14 6 -0.8949 -3.5233 -3.1653 15 6 -0.3235 -3.9877 -4.5296 16 7 0.9498 -3.2580 -4.6756 17 6 1.5653 -2.9770 -5.8412 18 8 2.6139 -2.3677 -5.8419 19 6 0.9505 -3.4200 -7.1439 20 7 1.8068 -2.9950 -8.2591 21 6 1.8344 -1.5295 -8.3735 22 6 2.7827 -1.1293 -9.5068 23 8 2.3609 -1.7592 -10.7195 24 6 2.3232 -3.1867 -10.6438 25 6 1.3701 -3.6079 -9.5221 26 6 1.4366 -2.8871 -3.3370 27 6 0.1867 -2.3476 -1.2211 28 1 -0.4849 0.8401 0.0004 29 1 1.1123 -4.0726 0.8582 30 1 2.8014 -3.5444 0.6532 31 1 2.8032 -4.2704 -1.6770 32 1 2.2164 -5.6203 -0.6747 33 1 -1.5576 -4.2781 -2.7418 34 1 -1.4066 -2.5657 -3.2613 35 1 -1.0068 -3.7230 -5.3365 36 1 -0.1454 -5.0629 -4.5198 37 1 0.8566 -4.5059 -7.1507 38 1 -0.0362 -2.9694 -7.2517 39 1 0.8315 -1.1626 -8.5914 40 1 2.1850 -1.0979 -7.4360 41 1 3.7960 -1.4495 -9.2637 42 1 2.7635 -0.0468 -9.6331 43 1 3.3229 -3.5667 -10.4338 44 1 1.9711 -3.5930 -11.5920 45 1 1.3817 -4.6934 -9.4229 46 1 0.3598 -3.2742 -9.7583 47 1 1.5391 -1.8043 -3.2662 48 1 2.3965 -3.3667 -3.1451 49 1 -0.7029 -2.5990 -0.6436 50 1 0.0706 -1.3580 -1.6631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972343594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = -93.339057 kcal Electronic energy + Delta-G solvation = -31503.242276 eV Core-core repulsion = 27338.118099 eV Total energy + Delta-G solvation = -4165.124176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.70323 -40.75081 -39.71890 -37.58268 -36.46309 -36.28864 -33.38094 -33.09945 -32.14091 -30.61964 -30.37141 -29.15601 -27.65237 -25.80214 -25.02013 -24.98597 -24.32716 -22.65279 -21.50523 -20.64874 -20.16595 -18.90395 -18.35118 -17.91220 -17.45630 -17.15069 -16.92686 -16.65027 -16.46914 -16.15805 -16.02696 -15.80172 -15.73695 -15.29576 -15.21265 -14.92190 -14.74545 -14.67654 -14.50159 -13.88964 -13.56633 -13.36088 -13.18613 -13.04331 -13.01972 -12.88825 -12.73176 -12.53317 -12.40669 -12.31733 -12.27293 -12.19798 -12.17217 -11.79220 -11.58294 -11.18049 -11.04428 -10.81358 -10.61669 -10.50857 -9.70537 -9.42961 -8.76009 -7.94795 -5.39053 1.40503 1.44053 1.49624 1.57732 1.79986 2.43060 2.71649 2.76270 2.94519 3.19126 3.33983 3.49363 3.66393 3.77435 3.92677 3.93382 4.01304 4.08615 4.17426 4.21338 4.22811 4.27466 4.34555 4.37552 4.42436 4.51402 4.56482 4.61569 4.63143 4.73146 4.75350 4.78932 4.81004 4.85199 4.90638 4.98720 5.01817 5.03409 5.15190 5.19910 5.23401 5.48701 5.57287 5.73763 5.90669 6.14395 6.25225 6.33422 6.53060 7.03977 7.13816 7.72287 8.25196 9.11043 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.003202 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.630133 B = 8742.915518 C =10061.854099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.044 4.044 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.615 5.615 10 C 0.105 3.895 11 C 0.051 3.949 12 O -0.370 6.370 13 C 0.092 3.908 14 C -0.114 4.114 15 C 0.106 3.894 16 N -0.617 5.617 17 C 0.517 3.483 18 O -0.575 6.575 19 C 0.053 3.947 20 N -0.542 5.542 21 C 0.016 3.984 22 C 0.070 3.930 23 O -0.402 6.402 24 C 0.058 3.942 25 C 0.021 3.979 26 C 0.112 3.888 27 C 0.173 3.827 28 H 0.252 0.748 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.109 0.891 43 H 0.055 0.945 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.052 0.948 47 H 0.038 0.962 48 H 0.051 0.949 49 H 0.011 0.989 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 -12.031 -18.564 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.240 4.240 3 Si 0.787 3.213 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.339 5.339 10 C -0.021 4.021 11 C -0.027 4.027 12 O -0.289 6.289 13 C 0.050 3.950 14 C -0.152 4.152 15 C -0.015 4.015 16 N -0.352 5.352 17 C 0.307 3.693 18 O -0.454 6.454 19 C -0.077 4.077 20 N -0.268 5.268 21 C -0.112 4.112 22 C -0.007 4.007 23 O -0.321 6.321 24 C -0.019 4.019 25 C -0.106 4.106 26 C -0.011 4.011 27 C 0.047 3.953 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.153 0.847 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.127 0.873 43 H 0.073 0.927 44 H 0.143 0.857 45 H 0.129 0.871 46 H 0.071 0.929 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.029 0.971 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.069 -11.783 -18.719 22.216 hybrid contribution 0.095 1.765 1.038 2.050 sum -1.973 -10.018 -17.681 20.418 Atomic orbital electron populations 1.70123 1.06264 1.25987 1.55212 1.25654 0.96094 1.01018 1.01207 0.85466 0.77817 0.79830 0.78155 1.21304 1.21500 1.19846 1.19422 0.92764 0.85781 1.41355 0.91610 1.44372 1.33034 1.02034 1.54501 1.21762 0.98659 0.86401 0.95237 1.23131 0.86022 1.01067 0.92468 1.87670 1.41779 1.29463 1.69990 1.22450 0.94590 0.85453 0.92485 1.22768 0.94891 1.03868 0.93641 1.22621 0.83536 0.97246 0.98107 1.48751 1.25102 1.56438 1.04878 1.20993 0.84302 0.78853 0.85156 1.90661 1.24890 1.42553 1.87283 1.21965 0.95080 1.03978 0.86664 1.61803 1.52596 1.08188 1.04174 1.22830 0.99379 0.88373 1.00581 1.22610 0.96591 0.98493 0.83025 1.87943 1.88608 1.20624 1.34884 1.22876 0.99232 0.80288 0.99459 1.22915 0.98058 1.01492 0.88184 1.22040 0.97875 0.98665 0.82568 1.21017 0.88143 0.96681 0.89456 0.93895 0.95681 0.91379 0.94190 0.85779 0.86881 0.89370 0.86988 0.88948 0.84699 0.89539 0.93860 0.90682 0.93104 0.87340 0.92691 0.85723 0.87103 0.92947 0.94333 0.93082 0.97116 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.19 11.12 21.65 0.24 -53.95 16 2 C -0.04 -2.46 4.96 84.87 0.42 -2.04 16 3 Si 0.96 45.72 29.59 68.60 2.03 47.75 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.26 -14.59 9.66 84.04 0.81 -13.78 16 8 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 9 N -0.61 -30.85 2.97 -698.64 -2.08 -32.92 16 10 C 0.10 4.29 6.71 86.35 0.58 4.87 16 11 C 0.05 1.71 6.76 72.08 0.49 2.20 16 12 O -0.37 -12.97 10.26 -148.97 -1.53 -14.50 16 13 C 0.09 3.37 0.81 -10.22 -0.01 3.36 16 14 C -0.11 -3.01 6.21 31.80 0.20 -2.82 16 15 C 0.11 2.21 6.69 86.89 0.58 2.79 16 16 N -0.62 -18.65 3.33 -812.26 -2.71 -21.36 16 17 C 0.52 15.92 7.56 87.66 0.66 16.58 16 18 O -0.57 -23.34 14.68 -3.01 -0.04 -23.38 16 19 C 0.05 1.06 4.46 85.56 0.38 1.44 16 20 N -0.54 -11.97 4.46 -899.78 -4.01 -15.98 16 21 C 0.02 0.41 5.29 86.31 0.46 0.86 16 22 C 0.07 1.56 7.01 72.01 0.50 2.06 16 23 O -0.40 -8.68 10.83 -148.98 -1.61 -10.29 16 24 C 0.06 0.90 7.01 72.02 0.50 1.41 16 25 C 0.02 0.30 5.65 86.31 0.49 0.79 16 26 C 0.11 4.36 5.96 86.48 0.52 4.87 16 27 C 0.17 8.15 3.98 86.06 0.34 8.49 16 28 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 31 H 0.04 1.43 6.22 -2.39 -0.01 1.42 16 32 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.09 2.40 8.01 -2.39 -0.02 2.38 16 35 H 0.11 1.49 7.48 -2.39 -0.02 1.48 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.14 1.85 8.04 -2.39 -0.02 1.83 16 38 H 0.09 1.35 7.82 -2.39 -0.02 1.34 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 2.35 5.88 -2.39 -0.01 2.34 16 41 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.11 1.11 8.09 -2.38 -0.02 1.09 16 46 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.04 1.81 7.61 -2.39 -0.02 1.79 16 48 H 0.05 2.14 6.00 -2.39 -0.01 2.13 16 49 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.06 3.41 5.91 -2.38 -0.01 3.39 16 Total: -1.00 -74.66 382.05 -1.86 -76.52 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.92 Total: 17.02 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 6.93 Total: 31.09 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -8.56 Total: -124.21 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -3.19 Total: -48.18 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.66 -1.86 -76.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972343594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.819 kcal (2) G-P(sol) polarization free energy of solvation -74.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds