Wall clock time and date at job start Sat Apr 11 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47148 * 355.35953 * 3 2 1 5 5 H 1.48502 * 109.46790 * 235.36354 * 3 2 1 6 6 H 1.48493 * 109.47253 * 115.36428 * 3 2 1 7 7 C 1.38808 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99960 * 352.25537 * 7 2 1 9 9 N 1.36934 * 120.00371 * 172.25250 * 7 2 1 10 10 C 1.47076 * 136.05468 * 6.39293 * 9 7 2 11 11 C 1.53758 * 87.88565 * 152.96228 * 10 9 7 12 12 N 1.46497 * 114.08793 * 139.78127 * 11 10 9 13 13 C 1.34776 * 120.00548 * 111.56049 * 12 11 10 14 14 O 1.21287 * 119.99225 * 0.02562 * 13 12 11 15 15 C 1.50690 * 120.00344 * 180.02562 * 13 12 11 16 16 H 1.09004 * 110.55288 * 53.57282 * 15 13 12 17 17 C 1.54996 * 110.62063 * 290.52171 * 15 13 12 18 18 C 1.54801 * 102.09288 * 204.47612 * 17 15 13 19 19 C 1.54096 * 104.19427 * 20.88161 * 18 17 15 20 20 H 1.09004 * 109.88181 * 242.61223 * 19 18 17 21 21 C 1.52996 * 110.00681 * 121.51872 * 19 18 17 22 22 N 1.46900 * 109.47352 * 180.64225 * 21 19 18 23 23 C 1.47017 * 110.99924 * 293.64255 * 22 21 19 24 24 C 1.53108 * 109.25436 * 177.60762 * 23 22 21 25 25 O 1.43009 * 109.26008 * 56.84391 * 24 23 22 26 26 C 1.43015 * 113.74277 * 301.32755 * 25 24 23 27 27 C 1.47012 * 111.00230 * 170.00167 * 22 21 19 28 28 O 1.43750 * 107.28832 * 2.02646 * 19 18 17 29 29 C 1.47066 * 136.06273 * 186.76254 * 9 7 2 30 30 H 0.97005 * 119.99450 * 184.88010 * 1 2 3 31 31 H 1.08991 * 113.46561 * 267.69258 * 10 9 7 32 32 H 1.08994 * 113.46490 * 38.13563 * 10 9 7 33 33 H 1.09001 * 114.57643 * 272.66307 * 11 10 9 34 34 H 0.97000 * 119.99886 * 291.55815 * 12 11 10 35 35 H 1.08994 * 110.90640 * 322.67493 * 17 15 13 36 36 H 1.09006 * 110.90051 * 86.27699 * 17 15 13 37 37 H 1.08999 * 110.49229 * 262.20425 * 18 17 15 38 38 H 1.09002 * 110.60424 * 139.61642 * 18 17 15 39 39 H 1.08994 * 109.47494 * 300.64395 * 21 19 18 40 40 H 1.09004 * 109.47051 * 60.64704 * 21 19 18 41 41 H 1.08998 * 109.50551 * 297.53664 * 23 22 21 42 42 H 1.08991 * 109.50992 * 57.67327 * 23 22 21 43 43 H 1.09000 * 109.50138 * 296.90959 * 24 23 22 44 44 H 1.09000 * 109.50195 * 176.78310 * 24 23 22 45 45 H 1.08997 * 109.50513 * 298.74324 * 26 25 24 46 46 H 1.09000 * 109.51014 * 178.60449 * 26 25 24 47 47 H 1.09001 * 109.50867 * 302.33041 * 27 22 21 48 48 H 1.09003 * 109.50470 * 62.46193 * 27 22 21 49 49 H 1.09003 * 113.46381 * 321.86640 * 29 9 7 50 50 H 1.08999 * 113.46797 * 92.24407 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2891 2.7442 -0.1133 5 1 3.1868 1.6486 -1.1520 6 1 3.0170 1.7467 1.2650 7 6 2.0103 -1.2021 -0.0005 8 1 1.4777 -2.1332 0.1251 9 7 3.3703 -1.2074 -0.1604 10 6 4.4312 -0.1918 -0.2393 11 6 5.4060 -1.2502 0.3027 12 7 6.7245 -1.2313 -0.3354 13 6 7.8075 -0.8428 0.3665 14 8 7.6904 -0.5094 1.5267 15 6 9.1637 -0.8228 -0.2901 16 1 9.1350 -0.2383 -1.2097 17 6 9.6552 -2.2656 -0.5716 18 6 11.1918 -2.0823 -0.6136 19 6 11.4364 -0.7669 0.1509 20 1 11.8822 -0.0283 -0.5154 21 6 12.3624 -1.0184 1.3426 22 7 12.5752 0.2391 2.0714 23 6 13.3245 1.2027 1.2519 24 6 13.4716 2.5161 2.0248 25 8 14.1117 2.2573 3.2772 26 6 13.4085 1.3235 4.1012 27 6 13.2608 -0.0020 3.3493 28 8 10.1590 -0.2984 0.6148 29 6 4.4120 -2.2306 -0.3352 30 1 -0.4849 -0.8371 0.0715 31 1 4.6554 0.1233 -1.2583 32 1 4.2793 0.6481 0.4385 33 1 5.4545 -1.3072 1.3901 34 1 6.8182 -1.4984 -1.2632 35 1 9.3658 -2.9393 0.2348 36 1 9.2799 -2.6243 -1.5300 37 1 11.5376 -1.9949 -1.6435 38 1 11.6909 -2.9125 -0.1138 39 1 11.9069 -1.7515 2.0083 40 1 13.3197 -1.3977 0.9851 41 1 14.3121 0.7996 1.0280 42 1 12.7861 1.3859 0.3221 43 1 12.4859 2.9464 2.2019 44 1 14.0753 3.2140 1.4448 45 1 12.4211 1.7192 4.3385 46 1 13.9667 1.1589 5.0228 47 1 12.6760 -0.6982 3.9504 48 1 14.2475 -0.4244 3.1589 49 1 4.2438 -3.1275 0.2609 50 1 4.6305 -2.4536 -1.3796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030718470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:17 Heat of formation + Delta-G solvation = -44.657704 kcal Electronic energy + Delta-G solvation = -30048.571557 eV Core-core repulsion = 25885.558363 eV Total energy + Delta-G solvation = -4163.013194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59892 -39.82132 -39.05759 -37.74998 -36.00905 -33.82427 -32.50258 -32.15990 -31.59622 -31.01728 -28.31941 -27.37776 -25.41185 -25.14345 -24.40546 -23.06286 -22.26317 -21.26737 -20.68266 -20.38604 -19.80944 -17.56915 -17.45203 -17.13386 -16.62273 -16.54343 -16.24118 -15.81844 -15.42264 -15.35662 -15.25649 -14.91472 -14.61330 -14.54531 -14.13959 -13.96098 -13.55138 -13.15129 -13.14396 -12.87081 -12.45300 -12.33475 -12.21331 -12.01010 -11.96077 -11.75335 -11.67166 -11.61580 -11.53777 -11.41808 -11.10509 -10.81854 -10.57493 -10.38512 -10.15869 -9.90958 -9.63376 -9.47466 -9.22195 -8.88932 -8.68557 -8.56949 -7.20342 -6.35295 -3.27260 2.64849 2.90250 3.30889 3.43620 3.48091 3.55371 3.66643 3.82095 4.11288 4.25675 4.45963 4.53224 4.56094 4.58482 4.61784 4.72901 4.76144 4.81184 4.84400 4.87632 4.98283 5.02329 5.10051 5.17471 5.18326 5.20655 5.31067 5.32664 5.39485 5.41303 5.43947 5.50161 5.60055 5.63854 5.69010 5.73036 5.86598 6.12019 6.24284 6.30211 6.39024 6.46543 6.58357 6.71290 6.81047 6.96094 7.03598 7.63878 8.20419 8.35296 8.94051 9.46018 10.30089 11.17435 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002252 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.596085 B =12428.897418 C =13398.591488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.294 1.294 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.307 4.307 8 H 0.085 0.915 9 N -0.622 5.622 10 C 0.087 3.913 11 C 0.102 3.898 12 N -0.713 5.713 13 C 0.517 3.483 14 O -0.517 6.517 15 C 0.055 3.945 16 H 0.093 0.907 17 C -0.142 4.142 18 C -0.149 4.149 19 C 0.078 3.922 20 H 0.069 0.931 21 C 0.060 3.940 22 N -0.526 5.526 23 C 0.016 3.984 24 C 0.063 3.937 25 O -0.388 6.388 26 C 0.063 3.937 27 C 0.019 3.981 28 O -0.321 6.321 29 C 0.117 3.883 30 H 0.261 0.739 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.398 0.602 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.040 0.960 49 H 0.051 0.949 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.738 -3.341 -1.760 32.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.221 4.221 3 Si 0.902 3.098 4 H -0.221 1.221 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.433 4.433 8 H 0.102 0.898 9 N -0.350 5.350 10 C -0.040 4.040 11 C -0.003 4.003 12 N -0.366 5.366 13 C 0.301 3.699 14 O -0.391 6.391 15 C -0.007 4.007 16 H 0.111 0.889 17 C -0.180 4.180 18 C -0.188 4.188 19 C 0.019 3.981 20 H 0.087 0.913 21 C -0.068 4.068 22 N -0.251 5.251 23 C -0.112 4.112 24 C -0.014 4.014 25 O -0.307 6.307 26 C -0.014 4.014 27 C -0.109 4.109 28 O -0.239 6.239 29 C -0.011 4.011 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.232 0.768 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.106 0.894 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 31.841 -1.023 -0.557 31.862 hybrid contribution 0.756 -2.518 -1.046 2.829 sum 32.597 -3.541 -1.602 32.828 Atomic orbital electron populations 1.70934 1.05289 1.29467 1.51567 1.25759 0.96427 1.01048 0.98883 0.83698 0.73730 0.75874 0.76450 1.22142 1.21427 1.21890 1.20096 0.78097 0.95931 1.49127 0.89754 1.45693 1.02146 1.01847 1.85334 1.23245 0.87631 0.94492 0.98647 1.23516 0.78531 0.99011 0.99237 1.45920 1.07356 1.68010 1.15312 1.20128 0.85142 0.77577 0.87031 1.90748 1.85796 1.45924 1.16642 1.23029 0.88961 0.95083 0.93581 0.88908 1.23078 0.95113 0.96092 1.03671 1.22966 0.96354 0.98061 1.01374 1.22811 0.86056 0.94728 0.94511 0.91308 1.22325 0.97281 0.91673 0.95559 1.62094 1.47782 1.11073 1.04119 1.22846 0.96520 0.94146 0.97684 1.22663 0.98600 0.95511 0.84615 1.87964 1.50012 1.63185 1.29513 1.22673 0.97752 0.87860 0.93117 1.22784 0.97375 0.98807 0.91911 1.89191 1.13296 1.71872 1.49511 1.22638 0.87151 0.93742 0.97532 0.92863 0.93497 0.92719 0.86023 0.76777 0.89742 0.89235 0.90108 0.90002 0.89656 0.93504 0.94241 0.89425 0.91851 0.88529 0.91845 0.88474 0.89428 0.94221 0.93052 0.94243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.70 55.49 0.76 -28.81 16 2 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 3 Si 1.07 27.47 25.13 -169.99 -4.27 23.20 16 4 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 5 H -0.29 -6.83 6.13 56.52 0.35 -6.48 16 6 H -0.29 -7.27 6.65 56.52 0.38 -6.89 16 7 C -0.31 -8.89 11.08 -15.06 -0.17 -9.05 16 8 H 0.08 2.55 8.05 -52.48 -0.42 2.13 16 9 N -0.62 -15.32 3.70 -184.61 -0.68 -16.01 16 10 C 0.09 1.86 5.53 -8.36 -0.05 1.82 16 11 C 0.10 1.83 4.63 -67.68 -0.31 1.52 16 12 N -0.71 -9.71 5.38 -53.49 -0.29 -9.99 16 13 C 0.52 7.64 7.20 -10.99 -0.08 7.56 16 14 O -0.52 -10.27 16.16 -13.49 -0.22 -10.49 16 15 C 0.06 0.59 3.76 -26.83 -0.10 0.48 16 16 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.14 -1.05 6.57 -24.73 -0.16 -1.21 16 18 C -0.15 -0.89 6.65 -25.21 -0.17 -1.06 16 19 C 0.08 0.65 3.29 -26.16 -0.09 0.56 16 20 H 0.07 0.51 6.52 -51.93 -0.34 0.17 16 21 C 0.06 0.48 4.44 -3.83 -0.02 0.47 16 22 N -0.53 -5.00 4.63 -234.30 -1.09 -6.08 16 23 C 0.02 0.13 5.44 -3.70 -0.02 0.11 16 24 C 0.06 0.53 7.01 37.21 0.26 0.80 16 25 O -0.39 -3.91 10.83 -35.23 -0.38 -4.29 16 26 C 0.06 0.54 7.01 37.21 0.26 0.80 16 27 C 0.02 0.16 5.65 -3.71 -0.02 0.14 16 28 O -0.32 -4.07 10.37 -54.27 -0.56 -4.63 16 29 C 0.12 2.20 8.44 -8.51 -0.07 2.13 16 30 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 31 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 32 H 0.05 1.27 4.65 -51.93 -0.24 1.03 16 33 H 0.12 2.40 7.45 -51.93 -0.39 2.01 16 34 H 0.40 4.00 8.76 -40.82 -0.36 3.65 16 35 H 0.08 0.72 8.05 -51.93 -0.42 0.31 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.42 7.70 -51.93 -0.40 0.02 16 39 H 0.09 0.74 8.04 -51.93 -0.42 0.33 16 40 H 0.05 0.30 8.12 -51.93 -0.42 -0.12 16 41 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.66 6.38 -51.93 -0.33 0.33 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.04 0.67 8.13 -51.93 -0.42 0.24 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -37.35 389.80 -10.12 -47.47 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.44 Total: -0.54 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.83 Total: 4.29 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -1.30 Total: -60.89 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -1.16 Total: -19.41 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: -4.27 Total: 23.20 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.35 -10.12 -47.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030718470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.817 kcal (2) G-P(sol) polarization free energy of solvation -37.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds