Wall clock time and date at job start Sat Apr 11 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47148 * 355.35953 * 3 2 1 5 5 H 1.48502 * 109.46790 * 235.36354 * 3 2 1 6 6 H 1.48493 * 109.47253 * 115.36428 * 3 2 1 7 7 C 1.38808 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99960 * 352.25537 * 7 2 1 9 9 N 1.36934 * 120.00371 * 172.25250 * 7 2 1 10 10 C 1.47076 * 136.05468 * 6.39293 * 9 7 2 11 11 C 1.53758 * 87.88565 * 152.96228 * 10 9 7 12 12 N 1.46497 * 114.08793 * 139.78127 * 11 10 9 13 13 C 1.34776 * 120.00548 * 111.56049 * 12 11 10 14 14 O 1.21287 * 119.99225 * 0.02562 * 13 12 11 15 15 C 1.50690 * 120.00344 * 180.02562 * 13 12 11 16 16 H 1.09004 * 110.55288 * 53.57282 * 15 13 12 17 17 C 1.54996 * 110.62063 * 290.52171 * 15 13 12 18 18 C 1.54801 * 102.09288 * 204.47612 * 17 15 13 19 19 C 1.54096 * 104.19427 * 20.88161 * 18 17 15 20 20 H 1.09004 * 109.88181 * 242.61223 * 19 18 17 21 21 C 1.52996 * 110.00681 * 121.51872 * 19 18 17 22 22 N 1.46900 * 109.47352 * 180.64225 * 21 19 18 23 23 C 1.47017 * 110.99924 * 293.64255 * 22 21 19 24 24 C 1.53108 * 109.25436 * 177.60762 * 23 22 21 25 25 O 1.43009 * 109.26008 * 56.84391 * 24 23 22 26 26 C 1.43015 * 113.74277 * 301.32755 * 25 24 23 27 27 C 1.47012 * 111.00230 * 170.00167 * 22 21 19 28 28 O 1.43750 * 107.28832 * 2.02646 * 19 18 17 29 29 C 1.47066 * 136.06273 * 186.76254 * 9 7 2 30 30 H 0.97005 * 119.99450 * 184.88010 * 1 2 3 31 31 H 1.08991 * 113.46561 * 267.69258 * 10 9 7 32 32 H 1.08994 * 113.46490 * 38.13563 * 10 9 7 33 33 H 1.09001 * 114.57643 * 272.66307 * 11 10 9 34 34 H 0.97000 * 119.99886 * 291.55815 * 12 11 10 35 35 H 1.08994 * 110.90640 * 322.67493 * 17 15 13 36 36 H 1.09006 * 110.90051 * 86.27699 * 17 15 13 37 37 H 1.08999 * 110.49229 * 262.20425 * 18 17 15 38 38 H 1.09002 * 110.60424 * 139.61642 * 18 17 15 39 39 H 1.08994 * 109.47494 * 300.64395 * 21 19 18 40 40 H 1.09004 * 109.47051 * 60.64704 * 21 19 18 41 41 H 1.08998 * 109.50551 * 297.53664 * 23 22 21 42 42 H 1.08991 * 109.50992 * 57.67327 * 23 22 21 43 43 H 1.09000 * 109.50138 * 296.90959 * 24 23 22 44 44 H 1.09000 * 109.50195 * 176.78310 * 24 23 22 45 45 H 1.08997 * 109.50513 * 298.74324 * 26 25 24 46 46 H 1.09000 * 109.51014 * 178.60449 * 26 25 24 47 47 H 1.09001 * 109.50867 * 302.33041 * 27 22 21 48 48 H 1.09003 * 109.50470 * 62.46193 * 27 22 21 49 49 H 1.09003 * 113.46381 * 321.86640 * 29 9 7 50 50 H 1.08999 * 113.46797 * 92.24407 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2891 2.7442 -0.1133 5 1 3.1868 1.6486 -1.1520 6 1 3.0170 1.7467 1.2650 7 6 2.0103 -1.2021 -0.0005 8 1 1.4777 -2.1332 0.1251 9 7 3.3703 -1.2074 -0.1604 10 6 4.4312 -0.1918 -0.2393 11 6 5.4060 -1.2502 0.3027 12 7 6.7245 -1.2313 -0.3354 13 6 7.8075 -0.8428 0.3665 14 8 7.6904 -0.5094 1.5267 15 6 9.1637 -0.8228 -0.2901 16 1 9.1350 -0.2383 -1.2097 17 6 9.6552 -2.2656 -0.5716 18 6 11.1918 -2.0823 -0.6136 19 6 11.4364 -0.7669 0.1509 20 1 11.8822 -0.0283 -0.5154 21 6 12.3624 -1.0184 1.3426 22 7 12.5752 0.2391 2.0714 23 6 13.3245 1.2027 1.2519 24 6 13.4716 2.5161 2.0248 25 8 14.1117 2.2573 3.2772 26 6 13.4085 1.3235 4.1012 27 6 13.2608 -0.0020 3.3493 28 8 10.1590 -0.2984 0.6148 29 6 4.4120 -2.2306 -0.3352 30 1 -0.4849 -0.8371 0.0715 31 1 4.6554 0.1233 -1.2583 32 1 4.2793 0.6481 0.4385 33 1 5.4545 -1.3072 1.3901 34 1 6.8182 -1.4984 -1.2632 35 1 9.3658 -2.9393 0.2348 36 1 9.2799 -2.6243 -1.5300 37 1 11.5376 -1.9949 -1.6435 38 1 11.6909 -2.9125 -0.1138 39 1 11.9069 -1.7515 2.0083 40 1 13.3197 -1.3977 0.9851 41 1 14.3121 0.7996 1.0280 42 1 12.7861 1.3859 0.3221 43 1 12.4859 2.9464 2.2019 44 1 14.0753 3.2140 1.4448 45 1 12.4211 1.7192 4.3385 46 1 13.9667 1.1589 5.0228 47 1 12.6760 -0.6982 3.9504 48 1 14.2475 -0.4244 3.1589 49 1 4.2438 -3.1275 0.2609 50 1 4.6305 -2.4536 -1.3796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030718470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:16 Heat of formation + Delta-G solvation = -75.380292 kcal Electronic energy + Delta-G solvation = -30049.903789 eV Core-core repulsion = 25885.558363 eV Total energy + Delta-G solvation = -4164.345426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53838 -40.74242 -40.13551 -39.05536 -36.70289 -35.34698 -34.23539 -33.06512 -32.25955 -31.77665 -29.80421 -28.46098 -27.06604 -26.03615 -25.04520 -24.34595 -23.31302 -21.86803 -21.62719 -21.45098 -21.30584 -19.59074 -18.44262 -17.94011 -17.68865 -17.28541 -17.21978 -16.99097 -16.60491 -16.12583 -16.06220 -15.98725 -15.64117 -15.58623 -15.33241 -15.15736 -14.84220 -14.43812 -14.02234 -13.80502 -13.62946 -13.45976 -13.39069 -13.24918 -13.07403 -12.87489 -12.59453 -12.46405 -12.38906 -12.21935 -12.20737 -12.09829 -11.69241 -11.49454 -11.44255 -11.30791 -11.06123 -10.95848 -10.69767 -10.47184 -9.99569 -9.29858 -9.25641 -8.68802 -5.51761 1.36593 1.45381 1.52907 1.64442 1.84353 2.48503 2.67697 2.89466 2.94145 3.09133 3.23174 3.49200 3.53800 3.63830 3.84071 3.91724 3.94219 4.01379 4.10113 4.14484 4.17857 4.21455 4.24985 4.30877 4.34144 4.43301 4.52869 4.59510 4.60311 4.61357 4.63738 4.70532 4.73052 4.78194 4.86407 4.90293 4.93727 4.99276 5.01734 5.07957 5.13994 5.20903 5.53037 5.84019 5.91104 5.96750 6.10620 6.15093 6.57327 6.65754 7.25104 7.27812 8.20219 8.86789 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002252 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.596085 B =12428.897418 C =13398.591488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.082 4.082 3 Si 1.107 2.893 4 H -0.302 1.302 5 H -0.255 1.255 6 H -0.288 1.288 7 C -0.289 4.289 8 H 0.058 0.942 9 N -0.658 5.658 10 C 0.079 3.921 11 C 0.127 3.873 12 N -0.694 5.694 13 C 0.515 3.485 14 O -0.576 6.576 15 C 0.058 3.942 16 H 0.123 0.877 17 C -0.136 4.136 18 C -0.140 4.140 19 C 0.072 3.928 20 H 0.081 0.919 21 C 0.060 3.940 22 N -0.552 5.552 23 C 0.021 3.979 24 C 0.059 3.941 25 O -0.404 6.404 26 C 0.061 3.939 27 C 0.022 3.978 28 O -0.362 6.362 29 C 0.124 3.876 30 H 0.248 0.752 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.421 0.579 35 H 0.067 0.933 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.117 0.883 45 H 0.047 0.953 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.397 -4.050 -4.219 36.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.274 4.274 3 Si 0.934 3.066 4 H -0.230 1.230 5 H -0.179 1.179 6 H -0.216 1.216 7 C -0.417 4.417 8 H 0.076 0.924 9 N -0.387 5.387 10 C -0.047 4.047 11 C 0.020 3.980 12 N -0.348 5.348 13 C 0.302 3.698 14 O -0.454 6.454 15 C -0.003 4.003 16 H 0.141 0.859 17 C -0.174 4.174 18 C -0.178 4.178 19 C 0.014 3.986 20 H 0.099 0.901 21 C -0.068 4.068 22 N -0.277 5.277 23 C -0.107 4.107 24 C -0.018 4.018 25 O -0.323 6.323 26 C -0.016 4.016 27 C -0.106 4.106 28 O -0.281 6.281 29 C -0.002 4.002 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.259 0.741 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.134 0.866 45 H 0.066 0.934 46 H 0.133 0.867 47 H 0.105 0.895 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 35.577 -1.789 -3.080 35.755 hybrid contribution -0.301 -2.394 -0.226 2.423 sum 35.276 -4.183 -3.305 35.676 Atomic orbital electron populations 1.71022 1.06529 1.28762 1.54992 1.26941 0.96541 1.04369 0.99580 0.83244 0.73194 0.72370 0.77784 1.22978 1.17935 1.21553 1.19976 0.80555 0.94683 1.46461 0.92424 1.45735 1.01579 1.05321 1.86030 1.23469 0.87498 0.94255 0.99511 1.22768 0.80206 0.96889 0.98139 1.45601 1.05466 1.67516 1.16229 1.21002 0.86718 0.75767 0.86335 1.90730 1.86757 1.48470 1.19424 1.23153 0.86011 0.97785 0.93362 0.85943 1.23117 0.96138 0.93441 1.04671 1.22975 0.95230 0.96892 1.02669 1.23040 0.84370 0.96329 0.94831 0.90148 1.22359 0.98176 0.90886 0.95371 1.62094 1.48643 1.12121 1.04861 1.22818 0.96849 0.93515 0.97526 1.22787 0.98146 0.96350 0.84488 1.87937 1.50491 1.63603 1.30230 1.22761 0.97209 0.87815 0.93829 1.22753 0.97668 0.98494 0.91699 1.89163 1.15180 1.72771 1.50966 1.22829 0.84907 0.92889 0.99575 0.94229 0.91212 0.94611 0.88239 0.74069 0.91392 0.86007 0.87360 0.89070 0.90925 0.91391 0.93377 0.88815 0.93465 0.86553 0.93441 0.86661 0.89517 0.93397 0.92641 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.35 13.70 21.65 0.30 -63.05 16 2 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 3 Si 1.11 55.72 25.13 68.60 1.72 57.45 16 4 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 5 H -0.25 -11.28 6.13 99.48 0.61 -10.67 16 6 H -0.29 -14.15 6.65 99.48 0.66 -13.49 16 7 C -0.29 -16.96 11.08 84.03 0.93 -16.03 16 8 H 0.06 3.60 8.05 -2.91 -0.02 3.58 16 9 N -0.66 -31.63 3.70 -737.98 -2.73 -34.36 16 10 C 0.08 3.22 5.53 83.27 0.46 3.68 16 11 C 0.13 4.29 4.63 45.55 0.21 4.50 16 12 N -0.69 -16.67 5.38 -441.53 -2.38 -19.05 16 13 C 0.51 14.19 7.20 87.65 0.63 14.82 16 14 O -0.58 -22.87 16.16 15.15 0.24 -22.62 16 15 C 0.06 1.05 3.76 30.53 0.11 1.16 16 16 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 17 C -0.14 -1.45 6.57 31.89 0.21 -1.25 16 18 C -0.14 -1.06 6.65 31.58 0.21 -0.85 16 19 C 0.07 0.99 3.29 30.96 0.10 1.09 16 20 H 0.08 0.91 6.52 -2.38 -0.02 0.89 16 21 C 0.06 0.85 4.44 86.30 0.38 1.23 16 22 N -0.55 -9.90 4.63 -895.20 -4.15 -14.04 16 23 C 0.02 0.30 5.44 86.32 0.47 0.77 16 24 C 0.06 0.95 7.01 72.02 0.50 1.46 16 25 O -0.40 -7.89 10.83 -148.98 -1.61 -9.50 16 26 C 0.06 1.02 7.01 72.02 0.50 1.53 16 27 C 0.02 0.35 5.65 86.32 0.49 0.83 16 28 O -0.36 -8.55 10.37 -130.77 -1.36 -9.91 16 29 C 0.12 4.33 8.44 83.18 0.70 5.03 16 30 H 0.25 16.22 8.73 -92.70 -0.81 15.41 16 31 H 0.07 2.57 7.73 -2.39 -0.02 2.55 16 32 H 0.04 1.62 4.65 -2.39 -0.01 1.61 16 33 H 0.10 3.89 7.45 -2.39 -0.02 3.88 16 34 H 0.42 6.40 8.76 -92.71 -0.81 5.59 16 35 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 36 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.09 0.56 7.70 -2.39 -0.02 0.54 16 39 H 0.07 1.19 8.04 -2.39 -0.02 1.18 16 40 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 41 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 1.22 6.38 -2.39 -0.02 1.20 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 48 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.08 2.22 8.13 -2.39 -0.02 2.20 16 Total: -1.00 -85.44 389.80 -3.62 -89.06 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.05 Total: 12.57 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 6.39 Total: 13.46 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -8.95 Total: -130.50 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -2.72 Total: -42.03 kcal Atomic # 14 Polarization: 55.72 SS G_CDS: 1.72 Total: 57.45 kcal Total: -85.44 -3.62 -89.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030718470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.677 kcal (2) G-P(sol) polarization free energy of solvation -85.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds