Wall clock time and date at job start Sat Apr 11 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99694 * 2 1 4 4 H 1.48502 * 109.47226 * 90.00211 * 3 2 1 5 5 H 1.48501 * 109.47061 * 209.99690 * 3 2 1 6 6 H 1.48500 * 109.47418 * 330.00035 * 3 2 1 7 7 C 1.38804 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00230 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64720 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27098 * 181.02645 * 10 9 7 12 12 C 1.55161 * 102.94540 * 22.19288 * 11 10 9 13 13 H 1.08994 * 111.00406 * 82.56955 * 12 11 10 14 14 N 1.46895 * 111.00547 * 206.38734 * 12 11 10 15 15 C 1.46896 * 110.99994 * 304.30097 * 14 12 11 16 16 C 1.53240 * 109.33999 * 172.74729 * 15 14 12 17 17 N 1.47076 * 108.52300 * 53.82757 * 16 15 14 18 18 C 1.34775 * 120.88088 * 128.79318 * 17 16 15 19 19 O 1.21292 * 119.99698 * 174.66928 * 18 17 16 20 20 C 1.50695 * 120.00151 * 354.67206 * 18 17 16 21 21 H 1.08995 * 109.52642 * 49.32320 * 20 18 17 22 22 C 1.53141 * 109.52524 * 289.19122 * 20 18 17 23 23 O 1.43071 * 109.15298 * 184.78849 * 22 20 18 24 24 C 1.43071 * 113.59686 * 57.95028 * 23 22 20 25 25 C 1.53148 * 109.14698 * 302.05010 * 24 23 22 26 26 O 1.43068 * 109.15375 * 55.31419 * 25 24 23 27 27 C 1.47088 * 118.23841 * 308.81957 * 17 16 15 28 28 C 1.46902 * 111.00014 * 179.97438 * 14 12 11 29 29 C 1.47420 * 125.64817 * 179.71838 * 9 7 2 30 30 H 0.96997 * 119.99733 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.88024 * 300.44096 * 10 9 7 32 32 H 1.08997 * 109.88250 * 61.60620 * 10 9 7 33 33 H 1.08998 * 110.72113 * 140.55512 * 11 10 9 34 34 H 1.08999 * 110.72040 * 263.65418 * 11 10 9 35 35 H 1.08996 * 109.49159 * 292.70405 * 15 14 12 36 36 H 1.08998 * 109.49507 * 52.79349 * 15 14 12 37 37 H 1.09004 * 109.62687 * 294.12332 * 16 15 14 38 38 H 1.09002 * 109.79557 * 173.63484 * 16 15 14 39 39 H 1.09010 * 109.52475 * 304.68691 * 22 20 18 40 40 H 1.08993 * 109.52551 * 64.87756 * 22 20 18 41 41 H 1.08998 * 109.52786 * 61.94612 * 24 23 22 42 42 H 1.09002 * 109.52681 * 182.08741 * 24 23 22 43 43 H 1.09006 * 109.52096 * 175.21571 * 25 24 23 44 44 H 1.08997 * 109.52538 * 295.34080 * 25 24 23 45 45 H 1.08998 * 109.62302 * 291.47258 * 27 17 16 46 46 H 1.08999 * 109.78502 * 170.98600 * 27 17 16 47 47 H 1.08997 * 109.49435 * 307.22179 * 28 14 12 48 48 H 1.09003 * 109.48781 * 67.29420 * 28 14 12 49 49 H 1.09003 * 110.36470 * 274.74134 * 29 9 7 50 50 H 1.09003 * 110.37171 * 37.06836 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 -0.0005 11 6 -0.4483 -4.0441 0.0263 12 6 0.8517 -4.6560 0.6121 13 1 0.8559 -4.5960 1.7003 14 7 1.0293 -6.0435 0.1634 15 6 -0.1437 -6.8604 0.5018 16 6 0.0006 -8.2453 -0.1380 17 7 1.2939 -8.8154 0.2688 18 6 1.3691 -10.0541 0.7947 19 8 2.4514 -10.5462 1.0349 20 6 0.1087 -10.8275 1.0843 21 1 -0.5412 -10.8057 0.2095 22 6 -0.6165 -10.1967 2.2765 23 8 -1.7505 -11.0006 2.6151 24 6 -1.4180 -12.3557 2.9314 25 6 -0.6929 -12.9865 1.7391 26 8 0.4412 -12.1827 1.4006 27 6 2.5030 -7.9978 0.0870 28 6 2.2604 -6.6225 0.7175 29 6 1.9336 -3.7310 -0.0048 30 1 -0.4849 0.8400 0.0004 31 1 -0.5581 -2.0521 0.8827 32 1 -0.5536 -2.0846 -0.9027 33 1 -1.2987 -4.2514 0.6757 34 1 -0.6338 -4.4176 -0.9808 35 1 -0.2136 -6.9655 1.5845 36 1 -1.0448 -6.3773 0.1238 37 1 -0.0333 -8.1524 -1.2236 38 1 -0.8078 -8.8939 0.1994 39 1 0.0609 -10.1450 3.1291 40 1 -0.9476 -9.1926 2.0118 41 1 -0.7676 -12.3766 3.8058 42 1 -2.3297 -12.9149 3.1419 43 1 -0.3617 -13.9907 2.0039 44 1 -1.3705 -13.0393 0.8870 45 1 2.7095 -7.8812 -0.9769 46 1 3.3509 -8.4795 0.5739 47 1 3.1024 -5.9668 0.4962 48 1 2.1573 -6.7308 1.7973 49 1 2.1631 -4.0395 -1.0248 50 1 2.8353 -3.7419 0.6076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046006126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:24 Heat of formation + Delta-G solvation = -66.085927 kcal Electronic energy + Delta-G solvation = -30921.029858 eV Core-core repulsion = 26757.087467 eV Total energy + Delta-G solvation = -4163.942392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10523 -39.72798 -38.50771 -36.82198 -36.33508 -34.41186 -32.67346 -31.89917 -31.18890 -29.27767 -28.84634 -27.82900 -26.17798 -25.32426 -24.18482 -23.65178 -22.40388 -21.50341 -19.95550 -19.85650 -19.25909 -17.96201 -17.37277 -17.15728 -16.87257 -16.43912 -16.03338 -15.92209 -15.39716 -15.17451 -14.95010 -14.74039 -14.57123 -14.54495 -14.07479 -13.87858 -13.49243 -13.23601 -13.05862 -12.64341 -12.50020 -12.30327 -12.14911 -12.11393 -11.83814 -11.69245 -11.40035 -11.32508 -11.26272 -11.03950 -10.89523 -10.81603 -10.19751 -10.12145 -10.06637 -9.97603 -9.92823 -9.67868 -9.67086 -8.98634 -8.60487 -8.22186 -6.83370 -5.71714 -3.05178 2.20397 2.32108 3.17667 3.35550 3.39845 3.44900 3.46830 3.85033 3.98819 4.07671 4.37063 4.46466 4.50765 4.58751 4.63252 4.69377 4.75473 4.90394 4.93283 5.02883 5.09166 5.20280 5.22403 5.25258 5.28705 5.44571 5.46273 5.52795 5.57730 5.66223 5.70131 5.81611 5.85555 5.92586 6.14845 6.23007 6.40077 6.44826 6.46089 6.48654 6.62174 6.72245 7.04831 7.11806 7.32674 7.55300 7.61720 7.81764 7.83139 8.25639 9.21735 9.82104 10.47735 11.40059 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.002223 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.803069 B =12592.833303 C =13208.326484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.179 3.821 11 C -0.135 4.135 12 C 0.067 3.933 13 H 0.048 0.952 14 N -0.525 5.525 15 C 0.039 3.961 16 C 0.103 3.897 17 N -0.608 5.608 18 C 0.524 3.476 19 O -0.518 6.518 20 C 0.038 3.962 21 H 0.094 0.906 22 C 0.035 3.965 23 O -0.371 6.371 24 C 0.019 3.981 25 C 0.023 3.977 26 O -0.351 6.351 27 C 0.120 3.880 28 C 0.041 3.959 29 C 0.149 3.851 30 H 0.252 0.748 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.036 0.964 49 H 0.030 0.970 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.779 -24.801 2.870 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.174 4.174 12 C -0.041 4.041 13 H 0.066 0.934 14 N -0.251 5.251 15 C -0.090 4.090 16 C -0.020 4.020 17 N -0.344 5.344 18 C 0.310 3.690 19 O -0.393 6.393 20 C -0.023 4.023 21 H 0.111 0.889 22 C -0.042 4.042 23 O -0.289 6.289 24 C -0.057 4.057 25 C -0.054 4.054 26 O -0.269 6.269 27 C -0.002 4.002 28 C -0.088 4.088 29 C 0.023 3.977 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.083 0.917 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.185 -24.837 2.494 25.311 hybrid contribution 0.201 0.897 0.873 1.267 sum -3.984 -23.941 3.367 24.502 Atomic orbital electron populations 1.69961 1.04874 1.25008 1.57204 1.24803 0.95740 0.97675 1.02321 0.86113 0.78601 0.83478 0.77538 1.21651 1.20681 1.21675 1.19049 0.90430 0.82346 1.43654 0.90452 1.44422 1.01758 0.99838 1.87282 1.21123 0.84408 0.87959 1.01079 1.22958 0.95048 0.99391 1.00016 1.22943 0.98740 0.85568 0.96860 0.93418 1.61948 1.01449 1.02134 1.59526 1.22477 0.95507 0.92862 0.98161 1.22091 0.84256 0.94378 1.01227 1.48122 1.09383 1.14679 1.62185 1.19860 0.89991 0.81396 0.77718 1.90729 1.29325 1.67695 1.51521 1.22571 0.95435 0.85011 0.99308 0.88854 1.23234 0.89184 0.95436 0.96366 1.88143 1.30725 1.21261 1.88801 1.23338 1.01634 0.83456 0.97309 1.23359 0.88993 0.95536 0.97497 1.88231 1.30865 1.18823 1.88988 1.21780 0.86907 0.89526 1.02005 1.22493 0.94359 0.95127 0.96802 1.21495 0.93346 0.85507 0.97384 0.93776 0.93702 0.93824 0.92647 0.91448 0.94605 0.88648 0.89685 0.89613 0.91305 0.86762 0.91743 0.87270 0.87082 0.91731 0.90232 0.88751 0.88773 0.94592 0.95181 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.31 55.49 0.57 -26.37 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -15.31 3.39 -169.94 -0.58 -15.88 16 10 C 0.18 4.26 5.37 -3.07 -0.02 4.24 16 11 C -0.14 -2.38 5.03 -24.90 -0.13 -2.51 16 12 C 0.07 1.12 2.73 -65.44 -0.18 0.94 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 N -0.53 -6.91 4.52 -223.65 -1.01 -7.93 16 15 C 0.04 0.41 5.42 -3.70 -0.02 0.39 16 16 C 0.10 0.89 5.81 -3.60 -0.02 0.87 16 17 N -0.61 -6.48 3.01 -172.46 -0.52 -7.00 16 18 C 0.52 6.40 7.04 -10.99 -0.08 6.32 16 19 O -0.52 -8.37 16.02 -14.09 -0.23 -8.59 16 20 C 0.04 0.37 2.39 -27.81 -0.07 0.31 16 21 H 0.09 0.74 7.18 -51.93 -0.37 0.36 16 22 C 0.04 0.31 6.01 37.23 0.22 0.53 16 23 O -0.37 -3.30 10.85 -48.80 -0.53 -3.83 16 24 C 0.02 0.13 7.05 37.23 0.26 0.39 16 25 C 0.02 0.16 7.05 37.23 0.26 0.42 16 26 O -0.35 -3.88 10.05 -62.42 -0.63 -4.51 16 27 C 0.12 1.34 6.57 -3.60 -0.02 1.31 16 28 C 0.04 0.49 5.52 -3.71 -0.02 0.47 16 29 C 0.15 3.01 5.96 -2.41 -0.01 3.00 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.04 1.18 7.38 -51.93 -0.38 0.80 16 32 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 33 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 34 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 35 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.10 0.97 6.64 -51.93 -0.34 0.62 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.55 4.56 -51.93 -0.24 0.31 16 39 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 40 H 0.11 0.85 6.15 -51.93 -0.32 0.53 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.11 7.11 -51.93 -0.37 0.74 16 47 H 0.09 1.16 7.05 -51.93 -0.37 0.80 16 48 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.03 0.66 7.87 -51.93 -0.41 0.25 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -33.99 379.89 -10.50 -44.49 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.22 Total: -3.00 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -0.07 Total: 9.89 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -1.54 Total: -57.17 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -1.38 Total: -16.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.99 -10.50 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046006126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.597 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds