Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99884 * 2 1 4 4 H 1.48505 * 109.46387 * 239.99719 * 3 2 1 5 5 H 1.48504 * 109.47112 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47365 * 119.99961 * 3 2 1 7 7 C 1.38809 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00147 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64580 * 0.02638 * 9 7 2 11 11 C 1.54906 * 104.82877 * 155.82444 * 10 9 7 12 12 C 1.55151 * 101.58493 * 37.00632 * 11 10 9 13 13 H 1.09001 * 110.72234 * 83.04209 * 12 11 10 14 14 N 1.46911 * 110.72127 * 206.13179 * 12 11 10 15 15 C 1.46896 * 110.99849 * 295.71676 * 14 12 11 16 16 C 1.53245 * 109.33618 * 172.74544 * 15 14 12 17 17 N 1.47080 * 108.68453 * 53.73199 * 16 15 14 18 18 C 1.34770 * 120.88174 * 128.91616 * 17 16 15 19 19 O 1.21282 * 120.00089 * 184.91280 * 18 17 16 20 20 C 1.50697 * 120.00240 * 4.90454 * 18 17 16 21 21 H 1.09009 * 109.52670 * 308.76685 * 20 18 17 22 22 C 1.53141 * 109.52326 * 68.96003 * 20 18 17 23 23 O 1.43072 * 109.15194 * 175.21948 * 22 20 18 24 24 C 1.43079 * 113.58927 * 302.04394 * 23 22 20 25 25 C 1.53141 * 109.14948 * 57.95469 * 24 23 22 26 26 O 1.43072 * 109.15272 * 304.68721 * 25 24 23 27 27 C 1.47154 * 118.19130 * 309.15415 * 17 16 15 28 28 C 1.46895 * 110.99825 * 171.41133 * 14 12 11 29 29 C 1.47022 * 125.65058 * 179.97438 * 9 7 2 30 30 H 0.97004 * 120.00311 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.36977 * 36.98179 * 10 9 7 32 32 H 1.08996 * 110.45759 * 274.70416 * 10 9 7 33 33 H 1.08999 * 111.00692 * 278.92680 * 11 10 9 34 34 H 1.09000 * 111.03904 * 155.09919 * 11 10 9 35 35 H 1.08996 * 109.49307 * 52.78603 * 15 14 12 36 36 H 1.08998 * 109.49366 * 292.69881 * 15 14 12 37 37 H 1.09002 * 109.62680 * 173.53855 * 16 15 14 38 38 H 1.09003 * 109.62922 * 293.92085 * 16 15 14 39 39 H 1.09006 * 109.52630 * 295.11620 * 22 20 18 40 40 H 1.08999 * 109.52852 * 55.31408 * 22 20 18 41 41 H 1.08995 * 109.52523 * 298.05180 * 24 23 22 42 42 H 1.09003 * 109.52790 * 177.85566 * 24 23 22 43 43 H 1.09001 * 109.52171 * 184.78585 * 25 24 23 44 44 H 1.09001 * 109.52253 * 64.59294 * 25 24 23 45 45 H 1.09005 * 109.46001 * 291.13779 * 27 17 16 46 46 H 1.08999 * 109.79998 * 170.75081 * 27 17 16 47 47 H 1.08998 * 109.49511 * 307.21632 * 28 14 12 48 48 H 1.08997 * 109.49497 * 67.29965 * 28 14 12 49 49 H 1.09003 * 109.88135 * 61.68787 * 29 9 7 50 50 H 1.08998 * 109.88472 * 300.52680 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1416 -2.5331 -0.0005 11 6 -0.4012 -3.9319 -0.6134 12 6 0.7785 -4.7523 -0.0281 13 1 0.5440 -5.1012 0.9777 14 7 1.1100 -5.8838 -0.9044 15 6 -0.0046 -6.8378 -0.9769 16 6 0.3066 -7.9025 -2.0343 17 7 1.6165 -8.4987 -1.7313 18 6 1.7678 -9.8360 -1.6590 19 8 2.8325 -10.3084 -1.3210 20 6 0.6141 -10.7442 -1.9980 21 1 -0.2689 -10.4361 -1.4381 22 6 0.3236 -10.6639 -3.4995 23 8 -0.6969 -11.6102 -3.8314 24 6 -0.3605 -12.9583 -3.4899 25 6 -0.0699 -13.0387 -1.9885 26 8 0.9504 -12.0923 -1.6565 27 6 2.7557 -7.5954 -1.5040 28 6 2.3481 -6.5428 -0.4676 29 6 1.9318 -3.7275 0.0005 30 1 -0.4851 0.8401 -0.0004 31 1 -0.5989 -1.7585 -0.6159 32 1 -0.5297 -2.4868 1.0169 33 1 -0.3509 -3.8972 -1.7017 34 1 -1.3588 -4.3330 -0.2814 35 1 -0.9181 -6.3098 -1.2502 36 1 -0.1372 -7.3167 -0.0067 37 1 -0.4615 -8.6756 -2.0125 38 1 0.3338 -7.4411 -3.0215 39 1 -0.0156 -9.6591 -3.7517 40 1 1.2302 -10.8945 -4.0589 41 1 0.5231 -13.2661 -4.0490 42 1 -1.1950 -13.6153 -3.7351 43 1 0.2692 -14.0435 -1.7364 44 1 -0.9766 -12.8081 -1.4291 45 1 3.0217 -7.1038 -2.4399 46 1 3.6090 -8.1632 -1.1333 47 1 3.1407 -5.8009 -0.3715 48 1 2.1827 -7.0258 0.4955 49 1 2.5275 -3.8647 0.9030 50 1 2.5590 -3.8505 -0.8824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046006128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = -64.804080 kcal Electronic energy + Delta-G solvation = -30786.932709 eV Core-core repulsion = 26623.045902 eV Total energy + Delta-G solvation = -4163.886807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08282 -39.73971 -38.50939 -36.80001 -36.33613 -34.42012 -32.63371 -31.88260 -31.21186 -29.30238 -28.84815 -27.74276 -26.19401 -25.36055 -24.15487 -23.64646 -22.48889 -21.34622 -20.04680 -19.78982 -19.29846 -17.94012 -17.27363 -17.13870 -16.91399 -16.47575 -16.10559 -15.86893 -15.46629 -15.12295 -14.88443 -14.76206 -14.58970 -14.49276 -14.03504 -13.87021 -13.52447 -13.27576 -13.08310 -12.75471 -12.43650 -12.38060 -12.13781 -11.86454 -11.71098 -11.62522 -11.38255 -11.35867 -11.29120 -11.05593 -10.94924 -10.80459 -10.25450 -10.19612 -10.10512 -9.94276 -9.84364 -9.67278 -9.57727 -8.96966 -8.64617 -8.19773 -6.83212 -5.65094 -3.06672 2.21282 2.33343 3.16759 3.35450 3.41028 3.45032 3.46308 3.86759 3.98650 4.09044 4.36168 4.46356 4.49968 4.57051 4.65272 4.71024 4.78150 4.92158 4.93792 5.05936 5.08915 5.20521 5.23408 5.25608 5.30263 5.43105 5.49849 5.51453 5.55473 5.66983 5.71430 5.82354 5.88572 5.94486 6.15915 6.31817 6.39246 6.45305 6.52608 6.53595 6.61984 6.68059 7.05737 7.14508 7.35895 7.51041 7.62622 7.84096 7.85329 8.36333 9.22211 9.83186 10.47772 11.38863 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.002141 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.662581 B =13071.946926 C =13518.090684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.153 3.847 11 C -0.133 4.133 12 C 0.071 3.929 13 H 0.043 0.957 14 N -0.525 5.525 15 C 0.041 3.959 16 C 0.105 3.895 17 N -0.608 5.608 18 C 0.524 3.476 19 O -0.518 6.518 20 C 0.038 3.962 21 H 0.094 0.906 22 C 0.036 3.964 23 O -0.372 6.372 24 C 0.020 3.980 25 C 0.023 3.977 26 O -0.351 6.351 27 C 0.119 3.881 28 C 0.039 3.961 29 C 0.146 3.854 30 H 0.252 0.748 31 H 0.108 0.892 32 H 0.010 0.990 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.035 0.965 49 H 0.016 0.984 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 -24.733 -6.437 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.172 4.172 12 C -0.037 4.037 13 H 0.061 0.939 14 N -0.250 5.250 15 C -0.088 4.088 16 C -0.018 4.018 17 N -0.344 5.344 18 C 0.310 3.690 19 O -0.393 6.393 20 C -0.023 4.023 21 H 0.111 0.889 22 C -0.041 4.041 23 O -0.290 6.290 24 C -0.057 4.057 25 C -0.054 4.054 26 O -0.269 6.269 27 C -0.003 4.003 28 C -0.090 4.090 29 C 0.019 3.981 30 H 0.063 0.937 31 H 0.126 0.874 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.054 0.946 49 H 0.034 0.966 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.991 -24.586 -6.714 25.661 hybrid contribution 0.192 0.464 1.024 1.141 sum -2.799 -24.122 -5.690 24.941 Atomic orbital electron populations 1.69776 1.04886 1.24868 1.57680 1.24783 0.95737 0.97705 1.02485 0.86144 0.78393 0.83014 0.77896 1.21130 1.21584 1.21258 1.19022 0.90469 0.82402 1.43028 0.90556 1.44420 1.01957 0.99611 1.86901 1.21918 0.84767 0.92492 0.98061 1.23083 0.94838 0.98290 1.00986 1.22711 0.98102 0.89798 0.93050 0.93928 1.62026 1.02488 1.08499 1.51981 1.22430 0.95673 0.93259 0.97413 1.22068 0.83676 0.95986 1.00066 1.48144 1.11334 1.04656 1.70240 1.19847 0.88840 0.82205 0.78073 1.90726 1.27975 1.74781 1.45815 1.22577 0.97301 0.84967 0.97502 0.88876 1.23208 0.93176 0.95025 0.92729 1.88140 1.41685 1.16321 1.82860 1.23335 1.02549 0.84377 0.95433 1.23364 0.92385 0.94227 0.95438 1.88233 1.41617 1.14242 1.82829 1.21805 0.88461 0.90094 0.99923 1.22506 0.94135 0.96415 0.95932 1.21237 0.93328 0.85640 0.97852 0.93695 0.87435 0.97234 0.91058 0.92850 0.88784 0.94640 0.89707 0.89683 0.86706 0.91264 0.91733 0.87296 0.87082 0.91752 0.90199 0.88688 0.88638 0.94626 0.96595 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.09 55.49 0.56 -26.17 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -15.35 3.39 -170.08 -0.58 -15.93 16 10 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 11 C -0.13 -2.41 5.56 -24.59 -0.14 -2.55 16 12 C 0.07 1.21 2.65 -65.88 -0.17 1.04 16 13 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 14 N -0.52 -7.22 4.46 -224.16 -1.00 -8.22 16 15 C 0.04 0.45 5.50 -3.70 -0.02 0.43 16 16 C 0.10 0.91 5.24 -3.60 -0.02 0.90 16 17 N -0.61 -6.58 3.02 -172.40 -0.52 -7.10 16 18 C 0.52 6.45 7.06 -10.99 -0.08 6.37 16 19 O -0.52 -8.45 15.99 -14.16 -0.23 -8.68 16 20 C 0.04 0.37 2.40 -27.81 -0.07 0.30 16 21 H 0.09 0.76 6.97 -51.92 -0.36 0.40 16 22 C 0.04 0.29 6.04 37.23 0.22 0.52 16 23 O -0.37 -3.16 10.85 -48.80 -0.53 -3.69 16 24 C 0.02 0.13 7.05 37.23 0.26 0.39 16 25 C 0.02 0.16 7.05 37.23 0.26 0.42 16 26 O -0.35 -3.91 10.04 -62.46 -0.63 -4.54 16 27 C 0.12 1.37 6.60 -3.56 -0.02 1.35 16 28 C 0.04 0.49 5.40 -3.70 -0.02 0.47 16 29 C 0.15 3.00 5.66 -3.07 -0.02 2.98 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.05 0.84 7.93 -51.93 -0.41 0.43 16 35 H 0.09 0.98 6.94 -51.93 -0.36 0.62 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.55 5.20 -51.93 -0.27 0.28 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.12 0.75 6.31 -51.93 -0.33 0.42 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.15 7.06 -51.93 -0.37 0.79 16 47 H 0.10 1.26 6.54 -51.93 -0.34 0.92 16 48 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.04 0.73 7.48 -51.93 -0.39 0.34 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -33.87 378.86 -10.48 -44.35 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.17 Total: -2.24 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.07 Total: 9.53 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -1.54 Total: -57.42 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -1.38 Total: -16.91 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.87 -10.48 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046006128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.455 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds