Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47133 * 64.99910 * 4 3 2 6 6 C 1.46772 * 124.34898 * 269.72842 * 5 4 3 7 7 C 1.54306 * 105.55915 * 196.88669 * 6 5 4 8 8 H 1.09001 * 110.74968 * 93.00436 * 7 6 5 9 9 C 1.50709 * 111.11396 * 216.70765 * 7 6 5 10 10 O 1.21287 * 119.99668 * 354.01381 * 9 7 6 11 11 N 1.34775 * 120.00029 * 174.01292 * 9 7 6 12 12 C 1.46494 * 119.99895 * 179.97438 * 11 9 7 13 13 C 1.52993 * 110.89050 * 303.88363 * 12 11 9 14 14 C 1.55159 * 111.00259 * 180.02562 * 12 11 9 15 15 C 1.54321 * 102.94650 * 277.43012 * 14 12 11 16 16 N 1.47022 * 107.27013 * 337.80878 * 15 14 12 17 17 C 1.36933 * 125.64980 * 178.89159 * 16 15 14 18 18 H 1.08004 * 120.00157 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99996 * 0.02562 * 17 16 15 20 20 N 1.31613 * 120.00002 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00138 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46861 * 90.00300 * 21 19 17 23 23 H 1.48501 * 109.47321 * 210.00119 * 21 19 17 24 24 H 1.48503 * 109.47161 * 330.00291 * 21 19 17 25 25 C 1.47433 * 108.70456 * 358.93812 * 16 15 14 26 26 C 1.54623 * 101.84527 * 334.93091 * 7 6 5 27 27 C 1.34416 * 124.35006 * 90.02710 * 5 4 3 28 28 O 1.21281 * 124.94535 * 359.56838 * 27 5 4 29 29 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 32 32 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 33 33 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 34 34 H 1.09000 * 109.47569 * 185.00181 * 4 3 2 35 35 H 1.09008 * 109.47275 * 304.99847 * 4 3 2 36 36 H 1.09000 * 110.24355 * 316.00877 * 6 5 4 37 37 H 1.08995 * 110.24338 * 78.01645 * 6 5 4 38 38 H 0.97004 * 119.99851 * 0.02562 * 11 9 7 39 39 H 1.09001 * 109.47066 * 59.29935 * 13 12 11 40 40 H 1.09006 * 109.47242 * 179.29782 * 13 12 11 41 41 H 1.08997 * 109.47141 * 299.30252 * 13 12 11 42 42 H 1.08999 * 110.72150 * 35.79602 * 14 12 11 43 43 H 1.09001 * 110.71882 * 159.06397 * 14 12 11 44 44 H 1.08999 * 109.87857 * 97.22235 * 15 14 12 45 45 H 1.08994 * 109.88723 * 218.39252 * 15 14 12 46 46 H 0.97003 * 120.00312 * 180.02562 * 20 19 17 47 47 H 1.08994 * 110.36665 * 265.29323 * 25 16 15 48 48 H 1.08998 * 110.36309 * 142.96304 * 25 16 15 49 49 H 1.08999 * 110.49271 * 265.90451 * 26 7 6 50 50 H 1.09004 * 110.59931 * 143.31849 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1447 -0.8812 -1.4442 7 6 5.0104 -1.0311 -2.7127 8 1 6.0668 -1.1005 -2.4533 9 6 4.5779 -2.2230 -3.5274 10 8 3.7300 -2.9761 -3.0973 11 7 5.1334 -2.4520 -4.7339 12 6 4.7134 -3.6108 -5.5255 13 6 4.8903 -4.9068 -4.7318 14 6 5.4834 -3.6737 -6.8710 15 6 4.6909 -2.7004 -7.7688 16 7 3.3409 -2.5819 -7.1989 17 6 2.3339 -1.7941 -7.6892 18 1 1.3733 -1.7763 -7.1959 19 6 2.5477 -1.0183 -8.8203 20 7 3.7182 -1.0404 -9.4217 21 14 1.1738 0.0559 -9.4896 22 1 1.2436 1.3986 -8.8593 23 1 1.3234 0.1913 -10.9608 24 1 -0.1378 -0.5684 -9.1808 25 6 3.2511 -3.4509 -6.0113 26 6 4.7095 0.2886 -3.4602 27 6 4.2852 1.2453 -2.3677 28 8 4.2308 2.4513 -2.4832 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.9784 2.1766 0.0902 35 1 3.8508 0.5686 0.8428 36 1 4.6526 -1.3201 -0.5855 37 1 3.1755 -1.3568 -1.5939 38 1 5.8118 -1.8498 -5.0776 39 1 4.2954 -4.8583 -3.8198 40 1 4.5599 -5.7513 -5.3367 41 1 5.9416 -5.0340 -4.4735 42 1 6.5105 -3.3317 -6.7439 43 1 5.4601 -4.6831 -7.2819 44 1 5.1768 -1.7247 -7.7769 45 1 4.6318 -3.0959 -8.7827 46 1 3.8678 -0.4980 -10.2119 47 1 2.8330 -4.4205 -6.2815 48 1 2.6447 -2.9770 -5.2394 49 1 3.9011 0.1453 -4.1771 50 1 5.6036 0.6567 -3.9635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046365324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -81.329792 kcal Electronic energy + Delta-G solvation = -31460.844782 eV Core-core repulsion = 27296.241366 eV Total energy + Delta-G solvation = -4164.603416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85677 -39.55582 -37.96965 -37.44527 -36.07897 -33.97139 -33.51547 -31.82038 -30.14167 -29.19196 -28.65895 -27.67713 -26.47651 -25.67936 -24.12854 -23.43124 -22.81088 -20.58554 -20.04313 -19.42458 -18.99480 -17.63203 -17.05242 -16.83809 -16.55596 -16.02891 -15.58830 -15.49416 -15.24394 -14.87675 -14.64608 -14.56416 -13.87968 -13.82640 -13.63057 -13.45007 -13.20658 -12.89530 -12.82195 -12.50505 -12.27791 -12.09757 -12.01130 -11.91585 -11.84261 -11.68559 -11.51870 -11.33282 -11.28371 -10.89753 -10.86259 -10.40536 -10.36092 -10.09679 -10.03681 -9.94638 -9.78859 -9.66034 -9.25220 -8.77933 -8.67553 -8.53455 -6.80049 -5.70568 -3.02519 2.56229 2.82199 2.84428 3.41090 3.42633 3.47516 3.48433 3.60012 4.25011 4.36306 4.51681 4.75344 4.80259 4.83309 4.95949 5.02660 5.06703 5.19922 5.22273 5.22939 5.31482 5.38405 5.43143 5.48129 5.55117 5.57741 5.60669 5.62236 5.72409 5.84861 6.00368 6.02012 6.13398 6.16373 6.35979 6.39653 6.42168 6.52814 6.67109 6.78735 6.90314 7.05518 7.10067 7.54695 7.56232 7.80101 7.86162 8.12889 8.26391 8.50627 9.24032 9.84101 10.49720 11.41328 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.003862 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.249554 B = 7248.635544 C = 8485.927422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.131 3.869 5 N -0.614 5.614 6 C 0.126 3.874 7 C -0.125 4.125 8 H 0.113 0.887 9 C 0.529 3.471 10 O -0.534 6.534 11 N -0.696 5.696 12 C 0.156 3.844 13 C -0.152 4.152 14 C -0.147 4.147 15 C 0.177 3.823 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.134 3.866 26 C -0.146 4.146 27 C 0.522 3.478 28 O -0.534 6.534 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.400 0.600 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.043 0.957 46 H 0.251 0.749 47 H 0.025 0.975 48 H 0.049 0.951 49 H 0.117 0.883 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 -0.942 18.881 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.037 4.037 4 C 0.009 3.991 5 N -0.348 5.348 6 C 0.003 3.997 7 C -0.147 4.147 8 H 0.131 0.869 9 C 0.313 3.687 10 O -0.412 6.412 11 N -0.346 5.346 12 C 0.070 3.930 13 C -0.210 4.210 14 C -0.186 4.186 15 C 0.052 3.948 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.571 5.571 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.007 3.993 26 C -0.186 4.186 27 C 0.310 3.690 28 O -0.411 6.411 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.234 0.766 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.067 0.933 49 H 0.135 0.865 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.844 -0.846 18.989 19.393 hybrid contribution -0.617 1.145 -0.700 1.477 sum 3.227 0.298 18.290 18.575 Atomic orbital electron populations 1.22737 0.80925 1.02932 0.99788 1.87906 1.19798 1.27247 1.95390 1.23043 0.94346 0.85505 1.00843 1.21398 0.92241 0.99629 0.85811 1.48208 1.66593 1.07964 1.12075 1.21908 1.01594 0.80092 0.96120 1.22220 1.02209 0.94077 0.96163 0.86889 1.19864 0.81573 0.85569 0.81646 1.90659 1.31738 1.47836 1.70926 1.45777 1.42309 1.28743 1.17762 1.21508 0.96984 0.84582 0.89968 1.22028 1.01400 0.95827 1.01769 1.23233 0.98737 1.01777 0.94817 1.21155 0.84136 0.95473 0.94001 1.44438 1.10440 1.49739 1.28303 1.19032 0.91591 1.17044 1.07458 0.90677 1.24736 0.97114 1.00317 0.98137 1.69935 1.21411 1.43748 1.22025 0.86175 0.81268 0.80592 0.78109 1.21642 1.21684 1.20765 1.21857 0.92916 0.94426 0.90091 1.22360 1.05551 0.92842 0.97829 1.20846 0.76129 0.88118 0.83913 1.90719 1.54432 1.13704 1.82239 0.94020 0.89456 0.94326 0.92733 0.92361 0.88477 0.89396 0.90146 0.88441 0.76624 0.90324 0.91991 0.93239 0.91741 0.90909 0.93602 0.93877 0.93852 0.95748 0.93250 0.86471 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.54 10.55 -35.23 -0.37 -4.91 16 3 C 0.04 0.42 6.28 37.16 0.23 0.65 16 4 C 0.13 1.28 6.32 -4.04 -0.03 1.25 16 5 N -0.61 -7.37 2.88 -172.52 -0.50 -7.86 16 6 C 0.13 1.44 6.57 -3.21 -0.02 1.42 16 7 C -0.12 -1.40 3.53 -90.23 -0.32 -1.72 16 8 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.53 7.66 6.45 -10.98 -0.07 7.59 16 10 O -0.53 -9.26 12.43 5.55 0.07 -9.19 16 11 N -0.70 -10.26 5.13 -45.62 -0.23 -10.49 16 12 C 0.16 2.60 0.82 -129.67 -0.11 2.49 16 13 C -0.15 -2.19 8.52 37.15 0.32 -1.88 16 14 C -0.15 -2.49 5.97 -24.90 -0.15 -2.64 16 15 C 0.18 4.05 5.36 -3.07 -0.02 4.03 16 16 N -0.60 -14.99 3.39 -170.07 -0.58 -15.56 16 17 C -0.22 -6.20 10.28 -15.06 -0.15 -6.35 16 18 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -26.58 10.31 55.49 0.57 -26.01 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 2.83 6.17 -2.52 -0.02 2.81 16 26 C -0.15 -1.88 6.37 -26.74 -0.17 -2.05 16 27 C 0.52 7.55 8.02 -10.86 -0.09 7.47 16 28 O -0.53 -9.55 17.60 5.56 0.10 -9.45 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.89 7.93 -51.93 -0.41 0.48 16 35 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 1.37 7.05 -51.93 -0.37 1.01 16 38 H 0.40 5.25 8.51 -40.82 -0.35 4.90 16 39 H 0.08 1.24 6.01 -51.93 -0.31 0.93 16 40 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 43 H 0.07 1.16 8.04 -51.93 -0.42 0.75 16 44 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16 45 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 46 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 48 H 0.05 1.12 6.87 -51.93 -0.36 0.76 16 49 H 0.12 1.83 7.89 -51.93 -0.41 1.42 16 50 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -34.18 399.30 -7.94 -42.12 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.43 Total: 3.80 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 0.43 Total: 14.20 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.74 Total: -59.93 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.20 Total: -23.56 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.18 -7.94 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046365324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.205 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds