Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99965 * 2 1 4 4 C 1.34773 * 120.00005 * 180.02562 * 2 1 3 5 5 O 1.21283 * 120.00330 * 359.97438 * 4 2 1 6 6 C 1.50704 * 120.00103 * 179.97438 * 4 2 1 7 7 H 1.09000 * 110.54605 * 57.87936 * 6 4 2 8 8 C 1.54990 * 110.61983 * 295.00123 * 6 4 2 9 9 C 1.54812 * 102.09296 * 204.47379 * 8 6 4 10 10 C 1.54106 * 104.18636 * 20.87682 * 9 8 6 11 11 H 1.09004 * 109.87596 * 242.45637 * 10 9 8 12 12 C 1.50697 * 109.87331 * 121.45717 * 10 9 8 13 13 O 1.21289 * 119.99767 * 245.30110 * 12 10 9 14 14 N 1.34770 * 120.00240 * 65.30650 * 12 10 9 15 15 C 1.46500 * 120.00272 * 179.97438 * 14 12 10 16 16 C 1.52999 * 110.77887 * 56.76197 * 15 14 12 17 17 C 1.55151 * 110.72349 * 179.97438 * 15 14 12 18 18 C 1.54917 * 101.58025 * 82.86483 * 17 15 14 19 19 N 1.47421 * 104.83002 * 37.01304 * 18 17 15 20 20 C 1.36934 * 125.64880 * 155.91318 * 19 18 17 21 21 H 1.08003 * 120.00238 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99973 * 359.96416 * 20 19 18 23 23 N 1.31618 * 120.00207 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46925 * 60.00571 * 24 22 20 26 26 H 1.48504 * 109.47268 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47647 * 300.00713 * 24 22 20 28 28 C 1.47021 * 108.70450 * 335.86832 * 19 18 17 29 29 O 1.43743 * 107.42110 * 1.95640 * 10 9 8 30 30 H 1.09004 * 109.46610 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46706 * 299.99933 * 1 2 3 32 32 H 1.08994 * 109.47253 * 60.00022 * 1 2 3 33 33 H 1.09003 * 109.46651 * 270.00232 * 3 2 1 34 34 H 1.08997 * 109.47188 * 30.00053 * 3 2 1 35 35 H 1.08998 * 109.47246 * 150.00305 * 3 2 1 36 36 H 1.09000 * 110.90845 * 86.27661 * 8 6 4 37 37 H 1.08994 * 110.93613 * 322.68423 * 8 6 4 38 38 H 1.09009 * 110.48499 * 262.20344 * 9 8 6 39 39 H 1.08994 * 110.48955 * 139.55720 * 9 8 6 40 40 H 0.96999 * 120.00169 * 0.02562 * 14 12 10 41 41 H 1.08998 * 109.47698 * 183.23679 * 16 15 14 42 42 H 1.09001 * 109.47548 * 303.24157 * 16 15 14 43 43 H 1.09000 * 109.47333 * 63.23900 * 16 15 14 44 44 H 1.08998 * 111.00631 * 324.79320 * 17 15 14 45 45 H 1.09004 * 111.00792 * 200.93718 * 17 15 14 46 46 H 1.09002 * 110.36419 * 155.85111 * 18 17 15 47 47 H 1.09001 * 110.36569 * 278.17123 * 18 17 15 48 48 H 0.96992 * 120.00536 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.88310 * 120.48076 * 28 19 18 50 50 H 1.09000 * 109.88323 * 241.64470 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6460 -1.1672 -0.0011 7 1 4.0289 -0.6247 0.8633 8 6 4.1913 -0.5538 -1.3159 9 6 5.5950 -1.1990 -1.4170 10 6 5.4997 -2.4523 -0.5253 11 1 6.2034 -2.3719 0.3033 12 6 5.8044 -3.6839 -1.3385 13 8 4.9409 -4.5142 -1.5282 14 7 7.0363 -3.8627 -1.8549 15 6 7.3327 -5.0603 -2.6450 16 6 6.3726 -5.1799 -3.8302 17 6 8.8058 -5.0462 -3.1318 18 6 9.5488 -5.6002 -1.8904 19 7 8.6468 -6.6271 -1.3379 20 6 9.0264 -7.6862 -0.5574 21 1 8.2859 -8.3866 -0.2002 22 6 10.3630 -7.8598 -0.2253 23 7 11.2654 -7.0062 -0.6602 24 14 10.8807 -9.3042 0.8402 25 1 10.5108 -10.5745 0.1657 26 1 12.3505 -9.2638 1.0488 27 1 10.1924 -9.2225 2.1535 28 6 7.2722 -6.3252 -1.7629 29 8 4.1556 -2.5200 -0.0204 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.3792 1.5834 -1.0277 34 1 1.6085 2.0284 0.5138 35 1 3.1500 1.1384 0.5138 36 1 4.2664 0.5307 -1.2373 37 1 3.5704 -0.8383 -2.1653 38 1 6.3563 -0.5175 -1.0372 39 1 5.8126 -1.4795 -2.4475 40 1 7.7270 -3.1989 -1.7028 41 1 6.5741 -6.1056 -4.3692 42 1 5.3452 -5.1877 -3.4663 43 1 6.5144 -4.3316 -4.4998 44 1 9.1317 -4.0318 -3.3616 45 1 8.9393 -5.7022 -3.9920 46 1 10.4980 -6.0478 -2.1850 47 1 9.7126 -4.8069 -1.1610 48 1 12.1993 -7.1272 -0.4279 49 1 6.8703 -7.1593 -2.3381 50 1 6.6467 -6.1388 -0.8899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046619673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = -67.780280 kcal Electronic energy + Delta-G solvation = -30931.586889 eV Core-core repulsion = 26767.571024 eV Total energy + Delta-G solvation = -4164.015865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.91773 -39.86908 -38.57049 -36.94717 -35.90138 -33.99626 -32.63999 -31.95504 -30.75808 -29.70887 -28.65477 -28.16287 -26.69261 -25.63586 -24.25882 -23.47089 -22.36061 -20.69832 -20.26357 -19.80674 -18.95826 -18.03807 -17.11557 -16.87332 -16.63907 -16.29750 -15.97546 -15.64928 -15.11072 -14.65419 -14.60251 -14.24394 -14.07618 -13.74938 -13.60665 -13.39789 -13.10453 -13.01166 -12.96776 -12.73800 -12.46135 -12.34705 -12.23195 -12.03726 -11.99927 -11.70120 -11.68293 -11.52461 -11.29144 -10.91059 -10.81138 -10.49076 -10.32043 -10.29748 -10.08530 -9.91401 -9.79718 -9.60147 -9.10255 -9.04672 -8.63301 -8.57877 -6.77913 -5.62026 -3.02011 2.28478 2.36527 2.86721 3.17206 3.44623 3.47939 3.50075 3.75589 3.97992 4.21063 4.41894 4.53238 4.56416 4.66855 4.71860 4.75299 4.83234 5.00545 5.05900 5.10848 5.15686 5.23034 5.29196 5.30540 5.42768 5.48499 5.51583 5.53070 5.60624 5.64672 5.76800 5.98976 6.07862 6.19737 6.25186 6.39622 6.41593 6.48288 6.57331 6.75082 6.88100 6.91124 7.18546 7.46690 7.66952 7.82217 7.86538 7.89425 8.38431 8.57281 9.26857 9.87360 10.52258 11.42404 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002465 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.231933 B =11355.602850 C =11751.716540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.623 5.623 3 C 0.075 3.925 4 C 0.519 3.481 5 O -0.507 6.507 6 C 0.057 3.943 7 H 0.099 0.901 8 C -0.142 4.142 9 C -0.144 4.144 10 C 0.056 3.944 11 H 0.099 0.901 12 C 0.513 3.487 13 O -0.511 6.511 14 N -0.706 5.706 15 C 0.162 3.838 16 C -0.153 4.153 17 C -0.146 4.146 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.216 4.216 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.926 5.926 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.136 3.864 29 O -0.314 6.314 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.397 0.603 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.010 0.990 48 H 0.251 0.749 49 H 0.031 0.969 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 23.781 -2.926 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.360 5.360 3 C -0.068 4.068 4 C 0.305 3.695 5 O -0.380 6.380 6 C -0.004 4.004 7 H 0.117 0.883 8 C -0.180 4.180 9 C -0.182 4.182 10 C -0.006 4.006 11 H 0.117 0.883 12 C 0.297 3.703 13 O -0.385 6.385 14 N -0.359 5.359 15 C 0.076 3.924 16 C -0.211 4.211 17 C -0.185 4.185 18 C 0.028 3.972 19 N -0.330 5.330 20 C -0.345 4.345 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.576 5.576 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.009 3.991 29 O -0.230 6.230 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.231 0.769 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.028 0.972 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -14.521 22.264 -2.895 26.738 hybrid contribution 0.788 -0.017 0.767 1.100 sum -13.733 22.247 -2.128 26.231 Atomic orbital electron populations 1.21690 0.78710 1.04494 1.01244 1.47612 1.07229 1.06010 1.75197 1.21931 0.97375 0.85382 1.02161 1.20233 0.89185 0.83594 0.76488 1.90775 1.69513 1.30742 1.46945 1.23028 0.91870 0.86185 0.99349 0.88337 1.23172 0.96471 1.01102 0.97212 1.22952 0.97793 0.95746 1.01728 1.22751 0.86661 0.94316 0.96845 0.88319 1.20151 0.82804 0.87286 0.80073 1.90711 1.46260 1.43937 1.57592 1.45880 1.11794 1.24175 1.54057 1.21331 0.95516 0.84856 0.90689 1.22076 1.01253 1.01287 0.96488 1.23359 0.93178 1.00607 1.01343 1.21938 0.95823 0.90294 0.89153 1.44495 1.00750 1.28408 1.59328 1.19069 0.92188 1.01024 1.22205 0.90590 1.24751 0.95729 0.99122 1.01221 1.69758 1.00912 1.37127 1.49762 0.86142 0.77230 0.81923 0.80177 1.21167 1.21623 1.21282 1.21622 0.88580 0.93040 0.95858 1.89228 1.26228 1.23067 1.84507 0.89372 0.92108 0.92137 0.92137 0.90705 0.90798 0.88843 0.89720 0.88962 0.89273 0.76932 0.91765 0.90505 0.93277 0.91910 0.90518 0.87437 0.97217 0.93802 0.95131 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.69 59.85 0.64 1.20 16 2 N -0.62 -5.09 3.27 -189.51 -0.62 -5.71 16 3 C 0.07 0.28 9.03 59.85 0.54 0.82 16 4 C 0.52 6.44 7.12 -10.98 -0.08 6.36 16 5 O -0.51 -9.02 15.89 -13.48 -0.21 -9.23 16 6 C 0.06 0.60 2.81 -26.83 -0.08 0.53 16 7 H 0.10 0.74 7.33 -51.93 -0.38 0.36 16 8 C -0.14 -1.07 5.78 -24.73 -0.14 -1.21 16 9 C -0.14 -1.17 6.62 -25.20 -0.17 -1.34 16 10 C 0.06 0.72 3.84 -27.31 -0.10 0.61 16 11 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 12 C 0.51 8.68 6.17 -10.99 -0.07 8.61 16 13 O -0.51 -10.99 13.51 -14.02 -0.19 -11.18 16 14 N -0.71 -11.11 5.12 -45.92 -0.24 -11.34 16 15 C 0.16 2.94 0.81 -129.99 -0.10 2.84 16 16 C -0.15 -2.51 8.43 37.16 0.31 -2.20 16 17 C -0.15 -2.63 6.07 -24.58 -0.15 -2.78 16 18 C 0.15 3.61 5.87 -2.53 -0.01 3.60 16 19 N -0.60 -15.91 3.39 -170.07 -0.58 -16.49 16 20 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 21 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 23 N -0.93 -26.96 10.09 55.49 0.56 -26.40 16 24 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.14 3.14 6.20 -3.06 -0.02 3.12 16 29 O -0.31 -4.96 10.04 -64.29 -0.65 -5.60 16 30 H 0.09 0.83 6.90 -51.93 -0.36 0.47 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.16 7.70 -51.93 -0.40 -0.24 16 34 H 0.07 0.16 8.07 -51.93 -0.42 -0.26 16 35 H 0.07 0.20 6.02 -51.93 -0.31 -0.11 16 36 H 0.09 0.35 6.53 -51.93 -0.34 0.02 16 37 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.09 0.75 7.69 -51.93 -0.40 0.35 16 40 H 0.40 5.12 8.49 -40.82 -0.35 4.78 16 41 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 42 H 0.08 1.41 5.97 -51.93 -0.31 1.10 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 45 H 0.08 1.37 8.05 -51.93 -0.42 0.96 16 46 H 0.11 2.87 5.88 -51.93 -0.31 2.57 16 47 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.03 0.73 7.77 -51.93 -0.40 0.32 16 50 H 0.03 0.79 6.90 -51.93 -0.36 0.43 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -39.01 389.83 -8.84 -47.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.09 Total: 1.36 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 0.32 Total: 13.28 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.87 Total: -59.95 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -1.05 Total: -26.01 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.01 -8.84 -47.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046619673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.930 kcal (2) G-P(sol) polarization free energy of solvation -39.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds