Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99965 * 2 1 4 4 C 1.34773 * 120.00005 * 180.02562 * 2 1 3 5 5 O 1.21283 * 120.00330 * 359.97438 * 4 2 1 6 6 C 1.50704 * 120.00103 * 179.97438 * 4 2 1 7 7 H 1.09000 * 110.54605 * 57.87936 * 6 4 2 8 8 C 1.54990 * 110.61983 * 295.00123 * 6 4 2 9 9 C 1.54812 * 102.09296 * 204.47379 * 8 6 4 10 10 C 1.54106 * 104.18636 * 20.87682 * 9 8 6 11 11 H 1.09004 * 109.87596 * 242.45637 * 10 9 8 12 12 C 1.50697 * 109.87331 * 121.45717 * 10 9 8 13 13 O 1.21289 * 119.99767 * 245.30110 * 12 10 9 14 14 N 1.34770 * 120.00240 * 65.30650 * 12 10 9 15 15 C 1.46500 * 120.00272 * 179.97438 * 14 12 10 16 16 C 1.52999 * 110.77887 * 56.76197 * 15 14 12 17 17 C 1.55151 * 110.72349 * 179.97438 * 15 14 12 18 18 C 1.54917 * 101.58025 * 82.86483 * 17 15 14 19 19 N 1.47421 * 104.83002 * 37.01304 * 18 17 15 20 20 C 1.36934 * 125.64880 * 155.91318 * 19 18 17 21 21 H 1.08003 * 120.00238 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99973 * 359.96416 * 20 19 18 23 23 N 1.31618 * 120.00207 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46925 * 60.00571 * 24 22 20 26 26 H 1.48504 * 109.47268 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47647 * 300.00713 * 24 22 20 28 28 C 1.47021 * 108.70450 * 335.86832 * 19 18 17 29 29 O 1.43743 * 107.42110 * 1.95640 * 10 9 8 30 30 H 1.09004 * 109.46610 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46706 * 299.99933 * 1 2 3 32 32 H 1.08994 * 109.47253 * 60.00022 * 1 2 3 33 33 H 1.09003 * 109.46651 * 270.00232 * 3 2 1 34 34 H 1.08997 * 109.47188 * 30.00053 * 3 2 1 35 35 H 1.08998 * 109.47246 * 150.00305 * 3 2 1 36 36 H 1.09000 * 110.90845 * 86.27661 * 8 6 4 37 37 H 1.08994 * 110.93613 * 322.68423 * 8 6 4 38 38 H 1.09009 * 110.48499 * 262.20344 * 9 8 6 39 39 H 1.08994 * 110.48955 * 139.55720 * 9 8 6 40 40 H 0.96999 * 120.00169 * 0.02562 * 14 12 10 41 41 H 1.08998 * 109.47698 * 183.23679 * 16 15 14 42 42 H 1.09001 * 109.47548 * 303.24157 * 16 15 14 43 43 H 1.09000 * 109.47333 * 63.23900 * 16 15 14 44 44 H 1.08998 * 111.00631 * 324.79320 * 17 15 14 45 45 H 1.09004 * 111.00792 * 200.93718 * 17 15 14 46 46 H 1.09002 * 110.36419 * 155.85111 * 18 17 15 47 47 H 1.09001 * 110.36569 * 278.17123 * 18 17 15 48 48 H 0.96992 * 120.00536 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.88310 * 120.48076 * 28 19 18 50 50 H 1.09000 * 109.88323 * 241.64470 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6460 -1.1672 -0.0011 7 1 4.0289 -0.6247 0.8633 8 6 4.1913 -0.5538 -1.3159 9 6 5.5950 -1.1990 -1.4170 10 6 5.4997 -2.4523 -0.5253 11 1 6.2034 -2.3719 0.3033 12 6 5.8044 -3.6839 -1.3385 13 8 4.9409 -4.5142 -1.5282 14 7 7.0363 -3.8627 -1.8549 15 6 7.3327 -5.0603 -2.6450 16 6 6.3726 -5.1799 -3.8302 17 6 8.8058 -5.0462 -3.1318 18 6 9.5488 -5.6002 -1.8904 19 7 8.6468 -6.6271 -1.3379 20 6 9.0264 -7.6862 -0.5574 21 1 8.2859 -8.3866 -0.2002 22 6 10.3630 -7.8598 -0.2253 23 7 11.2654 -7.0062 -0.6602 24 14 10.8807 -9.3042 0.8402 25 1 10.5108 -10.5745 0.1657 26 1 12.3505 -9.2638 1.0488 27 1 10.1924 -9.2225 2.1535 28 6 7.2722 -6.3252 -1.7629 29 8 4.1556 -2.5200 -0.0204 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.3792 1.5834 -1.0277 34 1 1.6085 2.0284 0.5138 35 1 3.1500 1.1384 0.5138 36 1 4.2664 0.5307 -1.2373 37 1 3.5704 -0.8383 -2.1653 38 1 6.3563 -0.5175 -1.0372 39 1 5.8126 -1.4795 -2.4475 40 1 7.7270 -3.1989 -1.7028 41 1 6.5741 -6.1056 -4.3692 42 1 5.3452 -5.1877 -3.4663 43 1 6.5144 -4.3316 -4.4998 44 1 9.1317 -4.0318 -3.3616 45 1 8.9393 -5.7022 -3.9920 46 1 10.4980 -6.0478 -2.1850 47 1 9.7126 -4.8069 -1.1610 48 1 12.1993 -7.1272 -0.4279 49 1 6.8703 -7.1593 -2.3381 50 1 6.6467 -6.1388 -0.8899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046619673.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = -97.284125 kcal Electronic energy + Delta-G solvation = -30932.866272 eV Core-core repulsion = 26767.571024 eV Total energy + Delta-G solvation = -4165.295247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88760 -41.06285 -39.70117 -38.46136 -36.67877 -35.74606 -33.94805 -33.13062 -32.15962 -30.99582 -30.32618 -28.69525 -27.57465 -27.37568 -25.53234 -24.83344 -23.09726 -22.27468 -21.79473 -20.60889 -20.40320 -19.15758 -18.70950 -17.89403 -17.60023 -17.28004 -17.16368 -16.79663 -16.54259 -16.16219 -15.80491 -15.55703 -15.29522 -14.89824 -14.73996 -14.52484 -14.31454 -14.17129 -14.06005 -13.60350 -13.41162 -13.37941 -13.33090 -13.20046 -13.17049 -13.02326 -12.84929 -12.77378 -12.75364 -12.40577 -12.10553 -12.05467 -12.01437 -11.91492 -11.69937 -11.54687 -11.31094 -10.78511 -10.75664 -10.36024 -10.04758 -9.73804 -8.90152 -7.80116 -5.23561 1.43042 1.43900 1.46755 1.53299 1.55132 1.69499 2.10846 2.47245 2.93862 3.24126 3.28633 3.48306 3.63311 3.69594 3.76219 3.81385 3.94543 4.01031 4.04412 4.16816 4.30695 4.37407 4.43616 4.52800 4.57245 4.61692 4.67213 4.76177 4.78247 4.79107 4.84782 4.89202 4.90750 4.91683 4.99472 5.00437 5.05345 5.09305 5.31870 5.40697 5.41768 5.60045 5.63765 5.70997 5.80264 6.24199 6.30766 6.63714 7.06339 7.10612 7.31711 7.75492 8.39096 9.20821 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.002465 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.231933 B =11355.602850 C =11751.716540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.614 5.614 3 C 0.062 3.938 4 C 0.506 3.494 5 O -0.583 6.583 6 C 0.051 3.949 7 H 0.135 0.865 8 C -0.130 4.130 9 C -0.133 4.133 10 C 0.055 3.945 11 H 0.117 0.883 12 C 0.505 3.495 13 O -0.567 6.567 14 N -0.695 5.695 15 C 0.173 3.827 16 C -0.143 4.143 17 C -0.124 4.124 18 C 0.154 3.846 19 N -0.622 5.622 20 C -0.247 4.247 21 H 0.065 0.935 22 C -0.057 4.057 23 N -0.941 5.941 24 Si 0.978 3.022 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.135 3.865 29 O -0.368 6.368 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.063 0.937 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.414 0.586 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.077 0.923 47 H -0.002 1.002 48 H 0.250 0.750 49 H 0.016 0.984 50 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.423 27.882 -3.555 30.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C -0.079 4.079 4 C 0.294 3.706 5 O -0.462 6.462 6 C -0.010 4.010 7 H 0.153 0.847 8 C -0.168 4.168 9 C -0.171 4.171 10 C -0.006 4.006 11 H 0.135 0.865 12 C 0.291 3.709 13 O -0.446 6.446 14 N -0.349 5.349 15 C 0.086 3.914 16 C -0.201 4.201 17 C -0.163 4.163 18 C 0.030 3.970 19 N -0.348 5.348 20 C -0.376 4.376 21 H 0.082 0.918 22 C -0.250 4.250 23 N -0.590 5.590 24 Si 0.806 3.194 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.211 1.211 28 C 0.008 3.992 29 O -0.286 6.286 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.162 0.838 37 H 0.082 0.918 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.251 0.749 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.016 0.984 48 H 0.060 0.940 49 H 0.034 0.966 50 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -13.302 26.478 -3.535 29.842 hybrid contribution 0.352 -1.259 1.024 1.660 sum -12.950 25.219 -2.511 28.461 Atomic orbital electron populations 1.21810 0.78438 1.02954 1.03477 1.47786 1.07785 1.06484 1.72808 1.22335 0.98118 0.83387 1.04065 1.20829 0.90306 0.83731 0.75744 1.90737 1.70959 1.33579 1.50967 1.23402 0.90483 0.84621 1.02456 0.84740 1.23217 0.95316 1.03704 0.94545 1.23048 0.99338 0.93927 1.00794 1.22918 0.86078 0.94015 0.97612 0.86524 1.21086 0.82162 0.88099 0.79529 1.90690 1.47989 1.46217 1.59657 1.45733 1.12152 1.23485 1.53483 1.21112 0.96372 0.83557 0.90385 1.21982 0.99198 1.02933 0.96034 1.23210 0.91514 1.02956 0.98591 1.21802 0.94980 0.89186 0.91053 1.44770 1.02418 1.28433 1.59229 1.19307 0.92578 1.02207 1.23520 0.91753 1.25518 0.95532 1.01639 1.02355 1.69979 1.00852 1.38112 1.50057 0.85175 0.76842 0.78999 0.78408 1.20557 1.20958 1.21071 1.21685 0.86679 0.95470 0.95347 1.89188 1.27723 1.26747 1.84957 0.92831 0.89744 0.89897 0.90169 0.88523 0.89080 0.83847 0.91799 0.84376 0.89366 0.74883 0.91588 0.92809 0.89817 0.87306 0.89954 0.90458 0.98384 0.93996 0.96560 0.98355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.69 127.77 1.37 2.37 16 2 N -0.61 -9.05 3.27 -871.88 -2.85 -11.91 16 3 C 0.06 0.20 9.03 127.77 1.15 1.35 16 4 C 0.51 12.68 7.12 87.66 0.62 13.30 16 5 O -0.58 -22.51 15.89 15.16 0.24 -22.27 16 6 C 0.05 0.98 2.81 30.53 0.09 1.07 16 7 H 0.14 1.55 7.33 -2.39 -0.02 1.53 16 8 C -0.13 -1.50 5.78 31.89 0.18 -1.31 16 9 C -0.13 -1.64 6.62 31.59 0.21 -1.43 16 10 C 0.05 1.34 3.84 30.22 0.12 1.45 16 11 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 12 C 0.50 17.21 6.17 87.66 0.54 17.75 16 13 O -0.57 -25.81 13.51 15.65 0.21 -25.60 16 14 N -0.69 -21.07 5.12 -417.57 -2.14 -23.21 16 15 C 0.17 6.18 0.81 4.79 0.00 6.19 16 16 C -0.14 -4.58 8.43 71.98 0.61 -3.97 16 17 C -0.12 -4.22 6.07 31.99 0.19 -4.03 16 18 C 0.15 7.31 5.87 86.86 0.51 7.82 16 19 N -0.62 -33.86 3.39 -691.98 -2.35 -36.21 16 20 C -0.25 -14.78 10.27 84.03 0.86 -13.92 16 21 H 0.06 3.86 7.83 -2.91 -0.02 3.84 16 22 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 23 N -0.94 -55.37 10.09 21.65 0.22 -55.16 16 24 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 27 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 28 C 0.13 6.52 6.20 86.73 0.54 7.06 16 29 O -0.37 -11.85 10.04 -121.20 -1.22 -13.07 16 30 H 0.05 1.11 6.90 -2.38 -0.02 1.09 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.02 7.70 -2.39 -0.02 0.00 16 34 H 0.10 -0.04 8.07 -2.39 -0.02 -0.06 16 35 H 0.09 0.02 6.02 -2.39 -0.01 0.00 16 36 H 0.14 0.19 6.53 -2.39 -0.02 0.17 16 37 H 0.06 1.03 8.05 -2.39 -0.02 1.01 16 38 H 0.14 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.09 1.15 7.69 -2.39 -0.02 1.13 16 40 H 0.41 9.56 8.49 -92.71 -0.79 8.77 16 41 H 0.07 2.06 8.06 -2.39 -0.02 2.04 16 42 H 0.05 2.01 5.97 -2.39 -0.01 2.00 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.11 2.75 8.07 -2.39 -0.02 2.73 16 45 H 0.08 2.76 8.05 -2.38 -0.02 2.74 16 46 H 0.08 4.17 5.88 -2.39 -0.01 4.16 16 47 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 48 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 49 H 0.02 0.82 7.77 -2.39 -0.02 0.80 16 50 H 0.00 -0.08 6.90 -2.39 -0.02 -0.10 16 Total: -1.00 -95.61 389.83 1.76 -93.85 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.16 Total: 13.62 kcal Atomic # 6 Polarization: 23.37 SS G_CDS: 7.46 Total: 30.83 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -7.12 Total: -126.48 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -0.76 Total: -60.94 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -95.61 1.76 -93.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046619673.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.439 kcal (2) G-P(sol) polarization free energy of solvation -95.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds