Wall clock time and date at job start Sat Apr 11 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47301 * 269.99703 * 3 2 1 5 5 H 1.48502 * 109.47372 * 29.99717 * 3 2 1 6 6 H 1.48502 * 109.47199 * 149.99551 * 3 2 1 7 7 C 1.38816 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99843 * 190.30121 * 7 2 1 9 9 N 1.36936 * 120.00154 * 10.02908 * 7 2 1 10 10 C 1.47083 * 120.87794 * 30.57652 * 9 7 2 11 11 C 1.53696 * 108.27754 * 128.75378 * 10 9 7 12 12 N 1.46899 * 109.25637 * 54.07624 * 11 10 9 13 13 C 1.46905 * 110.99639 * 172.60762 * 12 11 10 14 14 H 1.08994 * 110.88724 * 75.00653 * 13 12 11 15 15 C 1.55155 * 111.00025 * 198.88590 * 13 12 11 16 16 C 1.54326 * 102.93985 * 153.57992 * 15 13 12 17 17 N 1.47021 * 107.27096 * 337.80036 * 16 15 13 18 18 C 1.34777 * 125.65107 * 178.99767 * 17 16 15 19 19 O 1.21287 * 119.99822 * 4.94425 * 18 17 16 20 20 C 1.50695 * 120.00651 * 184.94719 * 18 17 16 21 21 H 1.09000 * 109.52432 * 51.29877 * 20 18 17 22 22 C 1.53151 * 109.51997 * 291.17719 * 20 18 17 23 23 O 1.43075 * 109.14775 * 184.78269 * 22 20 18 24 24 C 1.43071 * 113.59435 * 57.94857 * 23 22 20 25 25 C 1.53142 * 109.15389 * 302.04905 * 24 23 22 26 26 O 1.43065 * 109.52928 * 171.50261 * 20 18 17 27 27 C 1.47467 * 108.72343 * 358.98241 * 17 16 15 28 28 C 1.46894 * 111.27118 * 296.75552 * 12 11 10 29 29 C 1.47071 * 120.88194 * 210.84616 * 9 7 2 30 30 H 0.97003 * 120.00212 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.62277 * 248.51897 * 10 9 7 32 32 H 1.08997 * 109.63251 * 9.09659 * 10 9 7 33 33 H 1.09000 * 109.64498 * 294.07592 * 11 10 9 34 34 H 1.09004 * 109.41852 * 173.94583 * 11 10 9 35 35 H 1.08998 * 110.71829 * 271.93863 * 15 13 12 36 36 H 1.08993 * 110.72902 * 35.21361 * 15 13 12 37 37 H 1.09000 * 109.88947 * 97.22205 * 16 15 13 38 38 H 1.08999 * 109.88175 * 218.23416 * 16 15 13 39 39 H 1.08999 * 109.52178 * 304.68404 * 22 20 18 40 40 H 1.09000 * 109.52282 * 64.81947 * 22 20 18 41 41 H 1.09011 * 109.51995 * 61.95009 * 24 23 22 42 42 H 1.09002 * 109.52622 * 182.07256 * 24 23 22 43 43 H 1.09004 * 109.51929 * 175.21074 * 25 24 23 44 44 H 1.08999 * 109.52085 * 295.40726 * 25 24 23 45 45 H 1.09006 * 110.34533 * 265.24941 * 27 17 16 46 46 H 1.08996 * 110.40966 * 142.91623 * 27 17 16 47 47 H 1.08992 * 109.49237 * 303.14729 * 28 12 11 48 48 H 1.08998 * 109.51445 * 183.07707 * 28 12 11 49 49 H 1.09003 * 109.63053 * 350.89939 * 29 9 7 50 50 H 1.09003 * 109.62987 * 111.47696 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0772 -1.2097 0.1678 9 7 1.3412 -2.3791 -0.2055 10 6 0.1352 -2.4247 -1.0462 11 6 0.3132 -3.5444 -2.0840 12 7 0.6352 -4.7995 -1.3921 13 6 0.6413 -5.9307 -2.3294 14 1 1.5380 -5.9172 -2.9489 15 6 0.5074 -7.2794 -1.5741 16 6 -0.1381 -8.2032 -2.6284 17 7 -0.8122 -7.3411 -3.6101 18 6 -1.4799 -7.7658 -4.7011 19 8 -1.6379 -8.9532 -4.8912 20 6 -2.0300 -6.7656 -5.6849 21 1 -1.2430 -6.0696 -5.9754 22 6 -3.1833 -5.9929 -5.0383 23 8 -3.7717 -5.1257 -6.0124 24 6 -4.2570 -5.8112 -7.1706 25 6 -3.1037 -6.5839 -7.8172 26 8 -2.5153 -7.4511 -6.8431 27 6 -0.6375 -5.9344 -3.2036 28 6 1.9149 -4.7010 -0.6776 29 6 1.8061 -3.6299 0.4129 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7363 -2.6320 -0.4253 32 1 0.0070 -1.4692 -1.5548 33 1 1.1236 -3.2866 -2.7658 34 1 -0.6118 -3.6665 -2.6476 35 1 1.4871 -7.6556 -1.2799 36 1 -0.1424 -7.1723 -0.7057 37 1 0.6314 -8.7964 -3.1225 38 1 -0.8633 -8.8616 -2.1501 39 1 -3.9337 -6.6951 -4.6750 40 1 -2.8037 -5.4018 -4.2049 41 1 -5.0436 -6.5073 -6.8790 42 1 -4.6560 -5.0878 -7.8816 43 1 -3.4835 -7.1759 -8.6499 44 1 -2.3533 -5.8817 -8.1805 45 1 -1.4959 -5.5986 -2.6216 46 1 -0.5003 -5.2999 -4.0792 47 1 2.7029 -4.4272 -1.3790 48 1 2.1520 -5.6620 -0.2211 49 1 2.7832 -3.4716 0.8695 50 1 1.0921 -3.9509 1.1714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051988497.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:57 Heat of formation + Delta-G solvation = -71.470309 kcal Electronic energy + Delta-G solvation = -31143.491133 eV Core-core repulsion = 26979.315256 eV Total energy + Delta-G solvation = -4164.175876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.93628 -39.68541 -38.43979 -36.87540 -36.23839 -34.19316 -32.62429 -31.51050 -30.75165 -29.82439 -28.71252 -28.18789 -26.10979 -25.43185 -23.76083 -22.88633 -22.45885 -21.69296 -20.55738 -19.69099 -19.19259 -17.81704 -17.27179 -17.08359 -16.91106 -16.42412 -15.97131 -15.83443 -15.53878 -14.95101 -14.60493 -14.47676 -14.20655 -13.94923 -13.80282 -13.68692 -13.53633 -13.39899 -13.17471 -12.95434 -12.78735 -12.45463 -12.36127 -12.00218 -11.75103 -11.49016 -11.32782 -11.18982 -11.03854 -10.98335 -10.86755 -10.80343 -10.50133 -10.34580 -10.07465 -9.99819 -9.81701 -9.64912 -9.56523 -8.88204 -8.55454 -7.97390 -6.65307 -5.81540 -3.28822 2.26069 2.35781 3.31479 3.34610 3.41586 3.42647 3.44315 4.01427 4.13902 4.31477 4.33592 4.46099 4.49819 4.58602 4.64206 4.70465 4.81834 4.97439 5.03800 5.10537 5.15533 5.23788 5.34835 5.36263 5.37308 5.40989 5.43615 5.60561 5.66912 5.74788 5.82158 5.87056 5.97218 6.06322 6.10871 6.17684 6.26350 6.45998 6.52651 6.55452 6.62690 6.87985 7.15572 7.22304 7.47382 7.57301 7.66211 7.76794 7.87381 8.42709 9.18840 9.79745 10.39590 11.26777 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.002868 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.009976 B = 9758.956734 C =11399.096709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.596 5.596 10 C 0.180 3.820 11 C 0.029 3.971 12 N -0.520 5.520 13 C 0.070 3.930 14 H 0.054 0.946 15 C -0.121 4.121 16 C 0.112 3.888 17 N -0.614 5.614 18 C 0.540 3.460 19 O -0.518 6.518 20 C 0.042 3.958 21 H 0.094 0.906 22 C 0.035 3.965 23 O -0.368 6.368 24 C 0.019 3.981 25 C 0.023 3.977 26 O -0.352 6.352 27 C 0.098 3.902 28 C 0.046 3.954 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.028 0.972 32 H 0.090 0.910 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.028 0.972 48 H 0.063 0.937 49 H 0.056 0.944 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 -13.813 -11.467 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.100 4.100 12 N -0.245 5.245 13 C -0.040 4.040 14 H 0.072 0.928 15 C -0.159 4.159 16 C -0.010 4.010 17 N -0.351 5.351 18 C 0.326 3.674 19 O -0.393 6.393 20 C -0.020 4.020 21 H 0.112 0.888 22 C -0.042 4.042 23 O -0.287 6.287 24 C -0.058 4.058 25 C -0.054 4.054 26 O -0.271 6.271 27 C -0.025 4.025 28 C -0.083 4.083 29 C 0.022 3.978 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.095 0.905 47 H 0.047 0.953 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.247 -14.409 -11.284 19.039 hybrid contribution 1.095 1.095 -0.702 1.700 sum -4.152 -13.314 -11.986 18.389 Atomic orbital electron populations 1.69954 1.05188 1.25509 1.54262 1.25161 0.95445 0.98349 1.00472 0.86256 0.79023 0.83588 0.77653 1.21461 1.21644 1.20469 1.19183 0.90749 0.83834 1.44581 0.91807 1.44087 1.30352 1.03578 1.53868 1.20964 0.88515 0.94949 0.90156 1.23104 0.98552 0.90591 0.97730 1.62073 1.32775 1.03010 1.26687 1.22744 0.95651 0.92564 0.93060 0.92838 1.22711 1.01701 0.93570 0.97961 1.21972 0.96342 0.93437 0.89252 1.48359 1.53683 1.08753 1.24271 1.19488 0.78288 0.88944 0.80656 1.90731 1.57070 1.16977 1.74527 1.22514 0.97718 0.93718 0.88035 0.88797 1.23214 0.94481 0.94615 0.91925 1.88174 1.78049 1.32895 1.29552 1.23331 0.96068 0.97687 0.88666 1.23366 0.95655 0.94679 0.91663 1.88202 1.78319 1.32366 1.28166 1.22627 0.99465 0.81548 0.98851 1.22634 0.88738 0.99620 0.97355 1.20984 0.97871 0.86446 0.92499 0.93540 0.95437 0.89223 0.95514 0.92016 0.90077 0.89060 0.91402 0.91007 0.91328 0.86635 0.91795 0.87286 0.87112 0.91711 0.89332 0.90483 0.95344 0.91877 0.92595 0.95603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 11.02 55.49 0.61 -24.88 16 2 C 0.00 0.12 5.08 -17.43 -0.09 0.03 16 3 Si 0.90 21.20 29.57 -169.99 -5.03 16.17 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.76 9.62 -15.06 -0.14 -6.91 16 8 H 0.06 1.68 7.85 -52.49 -0.41 1.26 16 9 N -0.60 -14.40 3.02 -171.73 -0.52 -14.91 16 10 C 0.18 4.09 5.39 -3.36 -0.02 4.07 16 11 C 0.03 0.51 5.35 -3.46 -0.02 0.49 16 12 N -0.52 -8.03 4.53 -223.49 -1.01 -9.04 16 13 C 0.07 0.85 2.76 -65.56 -0.18 0.66 16 14 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 15 C -0.12 -1.24 5.93 -24.90 -0.15 -1.39 16 16 C 0.11 1.19 6.87 -3.06 -0.02 1.17 16 17 N -0.61 -7.16 3.33 -170.49 -0.57 -7.73 16 18 C 0.54 7.23 7.21 -10.99 -0.08 7.15 16 19 O -0.52 -8.84 16.86 -14.17 -0.24 -9.07 16 20 C 0.04 0.48 2.58 -27.81 -0.07 0.40 16 21 H 0.09 0.96 7.56 -51.93 -0.39 0.57 16 22 C 0.04 0.37 6.16 37.24 0.23 0.60 16 23 O -0.37 -3.99 10.85 -48.80 -0.53 -4.52 16 24 C 0.02 0.16 7.05 37.23 0.26 0.42 16 25 C 0.02 0.19 7.05 37.23 0.26 0.46 16 26 O -0.35 -4.35 10.04 -62.46 -0.63 -4.98 16 27 C 0.10 1.08 3.31 -2.51 -0.01 1.07 16 28 C 0.05 0.74 5.52 -3.70 -0.02 0.72 16 29 C 0.15 2.98 6.69 -3.61 -0.02 2.95 16 30 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 2.28 6.20 -51.93 -0.32 1.96 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.93 6.28 -51.93 -0.33 0.60 16 35 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.12 1.11 5.97 -51.93 -0.31 0.80 16 41 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.99 7.18 -51.93 -0.37 0.62 16 46 H 0.08 0.79 6.99 -51.93 -0.36 0.42 16 47 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.86 7.46 -51.93 -0.39 0.47 16 49 H 0.06 1.09 7.95 -51.93 -0.41 0.67 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -32.44 382.72 -10.55 -42.99 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.35 Total: -1.69 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -0.07 Total: 11.90 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -1.49 Total: -56.56 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.40 Total: -18.57 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.44 -10.55 -42.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051988497.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.480 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds