Wall clock time and date at job start Sat Apr 11 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47301 * 269.99703 * 3 2 1 5 5 H 1.48502 * 109.47372 * 29.99717 * 3 2 1 6 6 H 1.48502 * 109.47199 * 149.99551 * 3 2 1 7 7 C 1.38816 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99843 * 190.30121 * 7 2 1 9 9 N 1.36936 * 120.00154 * 10.02908 * 7 2 1 10 10 C 1.47083 * 120.87794 * 30.57652 * 9 7 2 11 11 C 1.53696 * 108.27754 * 128.75378 * 10 9 7 12 12 N 1.46899 * 109.25637 * 54.07624 * 11 10 9 13 13 C 1.46905 * 110.99639 * 172.60762 * 12 11 10 14 14 H 1.08994 * 110.88724 * 75.00653 * 13 12 11 15 15 C 1.55155 * 111.00025 * 198.88590 * 13 12 11 16 16 C 1.54326 * 102.93985 * 153.57992 * 15 13 12 17 17 N 1.47021 * 107.27096 * 337.80036 * 16 15 13 18 18 C 1.34777 * 125.65107 * 178.99767 * 17 16 15 19 19 O 1.21287 * 119.99822 * 4.94425 * 18 17 16 20 20 C 1.50695 * 120.00651 * 184.94719 * 18 17 16 21 21 H 1.09000 * 109.52432 * 51.29877 * 20 18 17 22 22 C 1.53151 * 109.51997 * 291.17719 * 20 18 17 23 23 O 1.43075 * 109.14775 * 184.78269 * 22 20 18 24 24 C 1.43071 * 113.59435 * 57.94857 * 23 22 20 25 25 C 1.53142 * 109.15389 * 302.04905 * 24 23 22 26 26 O 1.43065 * 109.52928 * 171.50261 * 20 18 17 27 27 C 1.47467 * 108.72343 * 358.98241 * 17 16 15 28 28 C 1.46894 * 111.27118 * 296.75552 * 12 11 10 29 29 C 1.47071 * 120.88194 * 210.84616 * 9 7 2 30 30 H 0.97003 * 120.00212 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.62277 * 248.51897 * 10 9 7 32 32 H 1.08997 * 109.63251 * 9.09659 * 10 9 7 33 33 H 1.09000 * 109.64498 * 294.07592 * 11 10 9 34 34 H 1.09004 * 109.41852 * 173.94583 * 11 10 9 35 35 H 1.08998 * 110.71829 * 271.93863 * 15 13 12 36 36 H 1.08993 * 110.72902 * 35.21361 * 15 13 12 37 37 H 1.09000 * 109.88947 * 97.22205 * 16 15 13 38 38 H 1.08999 * 109.88175 * 218.23416 * 16 15 13 39 39 H 1.08999 * 109.52178 * 304.68404 * 22 20 18 40 40 H 1.09000 * 109.52282 * 64.81947 * 22 20 18 41 41 H 1.09011 * 109.51995 * 61.95009 * 24 23 22 42 42 H 1.09002 * 109.52622 * 182.07256 * 24 23 22 43 43 H 1.09004 * 109.51929 * 175.21074 * 25 24 23 44 44 H 1.08999 * 109.52085 * 295.40726 * 25 24 23 45 45 H 1.09006 * 110.34533 * 265.24941 * 27 17 16 46 46 H 1.08996 * 110.40966 * 142.91623 * 27 17 16 47 47 H 1.08992 * 109.49237 * 303.14729 * 28 12 11 48 48 H 1.08998 * 109.51445 * 183.07707 * 28 12 11 49 49 H 1.09003 * 109.63053 * 350.89939 * 29 9 7 50 50 H 1.09003 * 109.62987 * 111.47696 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0772 -1.2097 0.1678 9 7 1.3412 -2.3791 -0.2055 10 6 0.1352 -2.4247 -1.0462 11 6 0.3132 -3.5444 -2.0840 12 7 0.6352 -4.7995 -1.3921 13 6 0.6413 -5.9307 -2.3294 14 1 1.5380 -5.9172 -2.9489 15 6 0.5074 -7.2794 -1.5741 16 6 -0.1381 -8.2032 -2.6284 17 7 -0.8122 -7.3411 -3.6101 18 6 -1.4799 -7.7658 -4.7011 19 8 -1.6379 -8.9532 -4.8912 20 6 -2.0300 -6.7656 -5.6849 21 1 -1.2430 -6.0696 -5.9754 22 6 -3.1833 -5.9929 -5.0383 23 8 -3.7717 -5.1257 -6.0124 24 6 -4.2570 -5.8112 -7.1706 25 6 -3.1037 -6.5839 -7.8172 26 8 -2.5153 -7.4511 -6.8431 27 6 -0.6375 -5.9344 -3.2036 28 6 1.9149 -4.7010 -0.6776 29 6 1.8061 -3.6299 0.4129 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7363 -2.6320 -0.4253 32 1 0.0070 -1.4692 -1.5548 33 1 1.1236 -3.2866 -2.7658 34 1 -0.6118 -3.6665 -2.6476 35 1 1.4871 -7.6556 -1.2799 36 1 -0.1424 -7.1723 -0.7057 37 1 0.6314 -8.7964 -3.1225 38 1 -0.8633 -8.8616 -2.1501 39 1 -3.9337 -6.6951 -4.6750 40 1 -2.8037 -5.4018 -4.2049 41 1 -5.0436 -6.5073 -6.8790 42 1 -4.6560 -5.0878 -7.8816 43 1 -3.4835 -7.1759 -8.6499 44 1 -2.3533 -5.8817 -8.1805 45 1 -1.4959 -5.5986 -2.6216 46 1 -0.5003 -5.2999 -4.0792 47 1 2.7029 -4.4272 -1.3790 48 1 2.1520 -5.6620 -0.2211 49 1 2.7832 -3.4716 0.8695 50 1 1.0921 -3.9509 1.1714 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051988497.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:56 Heat of formation + Delta-G solvation = -94.114869 kcal Electronic energy + Delta-G solvation = -31144.473074 eV Core-core repulsion = 26979.315256 eV Total energy + Delta-G solvation = -4165.157818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.84358 -40.60626 -39.64405 -38.13526 -37.09029 -35.76979 -33.62920 -33.08798 -31.87632 -31.24828 -29.82684 -29.02462 -27.67467 -26.33690 -25.01988 -24.41613 -23.65994 -22.54346 -21.64747 -20.80810 -20.58775 -18.82367 -18.66002 -18.04175 -17.88402 -17.41382 -16.91075 -16.77478 -16.68060 -16.37379 -15.86034 -15.69393 -15.38968 -15.24058 -15.09923 -14.81477 -14.76115 -14.60867 -14.45173 -14.02085 -13.85242 -13.64911 -13.25592 -13.10960 -13.00527 -12.72300 -12.66922 -12.55019 -12.49741 -12.20449 -11.99194 -11.95445 -11.89022 -11.76367 -11.68661 -11.39552 -11.32806 -10.97128 -10.56557 -10.35572 -9.84170 -9.26164 -8.58340 -7.84028 -5.34165 1.26922 1.45827 1.48633 1.49288 1.58079 2.51964 2.58087 2.60867 2.98738 3.27660 3.33058 3.36528 3.43021 3.69624 3.74761 3.77516 3.91036 4.02329 4.11309 4.18624 4.20168 4.25268 4.37145 4.40721 4.42767 4.45696 4.52032 4.63983 4.67136 4.73791 4.75123 4.76328 4.77548 4.84880 4.92748 4.94329 5.12647 5.13528 5.25700 5.26938 5.43954 5.64619 5.77728 5.78476 5.83816 6.15216 6.25804 6.27751 6.43609 6.88054 7.18754 7.88087 8.42334 9.21566 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.002868 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.009976 B = 9758.956734 C =11399.096709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.616 5.616 10 C 0.187 3.813 11 C 0.047 3.953 12 N -0.524 5.524 13 C 0.071 3.929 14 H 0.060 0.940 15 C -0.109 4.109 16 C 0.110 3.890 17 N -0.609 5.609 18 C 0.538 3.462 19 O -0.562 6.562 20 C 0.045 3.955 21 H 0.107 0.893 22 C 0.040 3.960 23 O -0.384 6.384 24 C 0.015 3.985 25 C 0.019 3.981 26 O -0.381 6.381 27 C 0.100 3.900 28 C 0.058 3.942 29 C 0.144 3.856 30 H 0.250 0.750 31 H 0.000 1.000 32 H 0.055 0.945 33 H 0.021 0.979 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.024 0.976 48 H 0.097 0.903 49 H 0.057 0.943 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -14.557 -12.403 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.340 5.340 10 C 0.061 3.939 11 C -0.082 4.082 12 N -0.250 5.250 13 C -0.038 4.038 14 H 0.077 0.923 15 C -0.147 4.147 16 C -0.012 4.012 17 N -0.344 5.344 18 C 0.326 3.674 19 O -0.440 6.440 20 C -0.016 4.016 21 H 0.125 0.875 22 C -0.038 4.038 23 O -0.303 6.303 24 C -0.061 4.061 25 C -0.057 4.057 26 O -0.300 6.300 27 C -0.023 4.023 28 C -0.071 4.071 29 C 0.018 3.982 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.042 0.958 48 H 0.116 0.884 49 H 0.076 0.924 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.472 -15.167 -12.213 19.980 hybrid contribution 0.845 1.279 -0.394 1.583 sum -3.627 -13.888 -12.607 19.104 Atomic orbital electron populations 1.70123 1.06497 1.25735 1.55695 1.25874 0.96193 1.01347 1.00925 0.85274 0.77995 0.79657 0.77525 1.21156 1.22206 1.19508 1.19495 0.91068 0.85117 1.43651 0.91788 1.44381 1.30481 1.04297 1.54824 1.20714 0.87275 0.95422 0.90506 1.22753 0.99695 0.89922 0.95866 1.61973 1.32523 1.02914 1.27554 1.22759 0.96325 0.91849 0.92911 0.92260 1.22659 1.02650 0.92069 0.97334 1.22062 0.96440 0.93537 0.89153 1.48371 1.52905 1.09189 1.23886 1.19863 0.77859 0.88699 0.81002 1.90705 1.58916 1.18754 1.75606 1.22519 0.98300 0.93137 0.87688 0.87520 1.23166 0.94075 0.94440 0.92099 1.88149 1.78130 1.33617 1.30374 1.23549 0.95971 0.98341 0.88269 1.23620 0.95831 0.94877 0.91382 1.88165 1.78774 1.34131 1.28921 1.22643 0.99035 0.81350 0.99259 1.22451 0.88856 0.99647 0.96142 1.21133 0.97418 0.85958 0.93677 0.94106 0.98184 0.92632 0.96070 0.89465 0.88159 0.89323 0.90972 0.90950 0.91939 0.85938 0.91748 0.84769 0.84993 0.90846 0.89205 0.89260 0.95788 0.88446 0.92413 0.96488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 11.02 21.65 0.24 -53.83 16 2 C -0.05 -2.62 5.08 84.86 0.43 -2.19 16 3 Si 0.97 44.00 29.57 68.60 2.03 46.03 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.26 -14.13 9.62 84.03 0.81 -13.33 16 8 H 0.06 3.36 7.85 -2.91 -0.02 3.34 16 9 N -0.62 -29.99 3.02 -697.24 -2.11 -32.09 16 10 C 0.19 8.61 5.39 86.50 0.47 9.08 16 11 C 0.05 1.57 5.35 86.54 0.46 2.04 16 12 N -0.52 -15.01 4.53 -860.99 -3.90 -18.91 16 13 C 0.07 1.50 2.76 46.31 0.13 1.63 16 14 H 0.06 1.27 8.11 -2.39 -0.02 1.25 16 15 C -0.11 -1.89 5.93 31.78 0.19 -1.70 16 16 C 0.11 2.10 6.87 86.73 0.60 2.69 16 17 N -0.61 -13.04 3.33 -811.68 -2.70 -15.74 16 18 C 0.54 13.86 7.21 87.66 0.63 14.49 16 19 O -0.56 -19.01 16.86 15.80 0.27 -18.75 16 20 C 0.04 0.97 2.58 29.90 0.08 1.04 16 21 H 0.11 1.98 7.56 -2.39 -0.02 1.96 16 22 C 0.04 0.78 6.16 72.03 0.44 1.23 16 23 O -0.38 -7.75 10.85 -136.00 -1.48 -9.22 16 24 C 0.01 0.21 7.05 72.03 0.51 0.72 16 25 C 0.02 0.28 7.05 72.03 0.51 0.79 16 26 O -0.38 -9.02 10.04 -122.95 -1.23 -10.26 16 27 C 0.10 1.95 3.31 86.85 0.29 2.24 16 28 C 0.06 1.74 5.52 86.39 0.48 2.22 16 29 C 0.14 5.64 6.69 86.35 0.58 6.22 16 30 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 32 H 0.06 2.92 6.20 -2.39 -0.01 2.91 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 2.47 6.28 -2.39 -0.01 2.46 16 35 H 0.10 1.40 8.06 -2.39 -0.02 1.39 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.12 2.15 5.97 -2.39 -0.01 2.14 16 41 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.13 1.31 8.14 -2.38 -0.02 1.30 16 44 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.80 7.18 -2.38 -0.02 1.78 16 46 H 0.09 1.57 6.99 -2.39 -0.02 1.55 16 47 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.10 2.28 7.46 -2.39 -0.02 2.26 16 49 H 0.06 2.20 7.95 -2.39 -0.02 2.18 16 50 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -71.70 382.72 -1.37 -73.06 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.92 Total: 12.54 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 6.59 Total: 27.17 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -8.47 Total: -120.57 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -2.44 Total: -38.23 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.70 -1.37 -73.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051988497.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.051 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds