Wall clock time and date at job start Sat Apr 11 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99965 * 2 1 4 4 H 1.48501 * 109.47065 * 240.00169 * 3 2 1 5 5 H 1.48503 * 109.46748 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47289 * 119.99560 * 3 2 1 7 7 C 1.38817 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00006 * 195.84706 * 7 2 1 9 9 N 1.36935 * 119.99455 * 15.85315 * 7 2 1 10 10 C 1.47083 * 120.87846 * 210.67071 * 9 7 2 11 11 C 1.53236 * 108.51965 * 231.16197 * 10 9 7 12 12 N 1.46899 * 109.34032 * 306.16819 * 11 10 9 13 13 C 1.46904 * 111.00202 * 187.25498 * 12 11 10 14 14 H 1.09007 * 110.88380 * 300.70144 * 13 12 11 15 15 C 1.55161 * 111.03579 * 64.60228 * 13 12 11 16 16 C 1.54327 * 102.93998 * 153.59578 * 15 13 12 17 17 N 1.47023 * 107.26946 * 337.80743 * 16 15 13 18 18 C 1.34777 * 125.65043 * 178.90919 * 17 16 15 19 19 O 1.21277 * 120.00548 * 175.27805 * 18 17 16 20 20 C 1.50703 * 119.99725 * 355.27649 * 18 17 16 21 21 H 1.08996 * 109.52441 * 316.45855 * 20 18 17 22 22 C 1.53146 * 109.52374 * 76.58643 * 20 18 17 23 23 O 1.43077 * 109.15003 * 175.21331 * 22 20 18 24 24 C 1.43075 * 113.59330 * 302.04946 * 23 22 20 25 25 C 1.53146 * 109.15272 * 57.95202 * 24 23 22 26 26 O 1.43071 * 109.52508 * 196.32757 * 20 18 17 27 27 C 1.47423 * 108.70435 * 358.94169 * 17 16 15 28 28 C 1.46900 * 111.27007 * 63.10554 * 12 11 10 29 29 C 1.47078 * 120.88679 * 30.64568 * 9 7 2 30 30 H 0.97001 * 120.00081 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.63111 * 111.45219 * 10 9 7 32 32 H 1.08995 * 109.79104 * 350.96606 * 10 9 7 33 33 H 1.09000 * 109.49277 * 186.20701 * 11 10 9 34 34 H 1.09003 * 109.51747 * 66.14144 * 11 10 9 35 35 H 1.09001 * 110.71936 * 271.95559 * 15 13 12 36 36 H 1.08993 * 110.71652 * 35.22976 * 15 13 12 37 37 H 1.09000 * 109.87941 * 218.39368 * 16 15 13 38 38 H 1.08995 * 109.88452 * 97.22056 * 16 15 13 39 39 H 1.08998 * 109.52406 * 295.11173 * 22 20 18 40 40 H 1.08994 * 109.52198 * 55.24965 * 22 20 18 41 41 H 1.09004 * 109.51996 * 177.85324 * 24 23 22 42 42 H 1.08996 * 109.52586 * 298.04774 * 24 23 22 43 43 H 1.09002 * 109.52003 * 64.58874 * 25 24 23 44 44 H 1.08994 * 109.52195 * 184.71768 * 25 24 23 45 45 H 1.09007 * 110.37052 * 265.28777 * 27 17 16 46 46 H 1.09005 * 110.36896 * 142.96946 * 27 17 16 47 47 H 1.09006 * 109.49143 * 56.85269 * 28 12 11 48 48 H 1.08998 * 109.49162 * 176.93537 * 28 12 11 49 49 H 1.09006 * 109.63059 * 248.54879 * 29 9 7 50 50 H 1.09001 * 109.62812 * 8.93277 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0595 -1.2197 0.2559 9 7 1.3647 -2.3656 -0.3229 10 6 1.7789 -3.6478 0.2668 11 6 1.9827 -4.6608 -0.8648 12 7 0.7684 -4.7197 -1.6895 13 6 0.8570 -5.8005 -2.6805 14 1 1.7149 -5.6561 -3.3373 15 6 0.9141 -7.1879 -1.9880 16 6 0.3272 -8.1326 -3.0579 17 7 -0.4874 -7.3116 -3.9656 18 6 -1.1534 -7.7617 -5.0474 19 8 -1.8654 -7.0091 -5.6778 20 6 -1.0132 -9.2004 -5.4737 21 1 0.0344 -9.4961 -5.4191 22 6 -1.8457 -10.0920 -4.5478 23 8 -1.7971 -11.4397 -5.0256 24 6 -2.2679 -11.5885 -6.3685 25 6 -1.4354 -10.6969 -7.2944 26 8 -1.4825 -9.3489 -6.8171 27 6 -0.4545 -5.9142 -3.4969 28 6 0.5028 -3.4296 -2.3399 29 6 0.2384 -2.3662 -1.2687 30 1 -0.4850 0.8400 0.0004 31 1 1.0040 -4.0066 0.9442 32 1 2.7123 -3.5178 0.8143 33 1 2.1824 -5.6447 -0.4406 34 1 2.8267 -4.3525 -1.4818 35 1 1.9435 -7.4607 -1.7554 36 1 0.2993 -7.1951 -1.0880 37 1 -0.2966 -8.8893 -2.5821 38 1 1.1341 -8.6101 -3.6136 39 1 -1.4385 -10.0488 -3.5376 40 1 -2.8787 -9.7445 -4.5395 41 1 -2.1665 -12.6291 -6.6768 42 1 -3.3154 -11.2921 -6.4222 43 1 -0.4021 -11.0438 -7.3018 44 1 -1.8418 -10.7412 -8.3048 45 1 -1.3159 -5.7066 -2.8620 46 1 -0.4338 -5.2299 -4.3452 47 1 1.3674 -3.1381 -2.9362 48 1 -0.3708 -3.5208 -2.9854 49 1 -0.6846 -2.6018 -0.7389 50 1 0.1521 -1.3853 -1.7360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051988499.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:03 Heat of formation + Delta-G solvation = -72.035804 kcal Electronic energy + Delta-G solvation = -30630.720485 eV Core-core repulsion = 26466.520087 eV Total energy + Delta-G solvation = -4164.200398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.96950 -39.74159 -38.40392 -36.91717 -36.34649 -34.24367 -32.48302 -31.47350 -30.79383 -29.79901 -29.09683 -28.09877 -26.11909 -25.36898 -23.77715 -22.93586 -22.43248 -21.82550 -20.47120 -19.71673 -19.18324 -17.85302 -17.41238 -17.08327 -16.95857 -16.42958 -16.19795 -15.78451 -15.51633 -14.89285 -14.73314 -14.43487 -14.11660 -14.03576 -13.86904 -13.86014 -13.50327 -13.43682 -13.11341 -13.02325 -12.70161 -12.57185 -12.32783 -12.08418 -11.84701 -11.45671 -11.31273 -11.23346 -11.08898 -11.05950 -10.92308 -10.73622 -10.48087 -10.32535 -10.07776 -10.00604 -9.77342 -9.67545 -9.60056 -8.87524 -8.51199 -7.94444 -6.62746 -5.79365 -3.24424 2.19974 2.36531 3.18011 3.37702 3.41422 3.43793 3.44533 4.00021 4.09295 4.16584 4.39299 4.44298 4.47512 4.49225 4.54017 4.60052 4.72439 4.81859 4.94234 5.05920 5.15909 5.20898 5.25082 5.27270 5.35463 5.38684 5.43112 5.65498 5.75278 5.79686 5.86746 5.87734 5.92784 6.09054 6.12866 6.21767 6.30067 6.39813 6.45668 6.50574 6.65989 6.90622 7.17091 7.21891 7.51516 7.59868 7.65209 7.80080 7.87888 8.44827 9.20466 9.82859 10.43566 11.29404 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030804 B = 0.002123 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.755505 B =13186.607342 C =13682.749930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.063 0.937 9 N -0.594 5.594 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.051 0.949 15 C -0.122 4.122 16 C 0.096 3.904 17 N -0.615 5.615 18 C 0.537 3.463 19 O -0.513 6.513 20 C 0.044 3.956 21 H 0.092 0.908 22 C 0.037 3.963 23 O -0.372 6.372 24 C 0.020 3.980 25 C 0.023 3.977 26 O -0.352 6.352 27 C 0.118 3.882 28 C 0.032 3.968 29 C 0.181 3.819 30 H 0.255 0.745 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.027 0.973 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 -24.868 -10.153 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.245 5.245 13 C -0.041 4.041 14 H 0.069 0.931 15 C -0.160 4.160 16 C -0.027 4.027 17 N -0.352 5.352 18 C 0.323 3.677 19 O -0.387 6.387 20 C -0.018 4.018 21 H 0.109 0.891 22 C -0.041 4.041 23 O -0.291 6.291 24 C -0.057 4.057 25 C -0.054 4.054 26 O -0.270 6.270 27 C -0.004 4.004 28 C -0.097 4.097 29 C 0.055 3.945 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.045 0.955 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.573 -24.413 -10.253 26.526 hybrid contribution 1.192 0.976 -0.618 1.660 sum -0.381 -23.437 -10.871 25.838 Atomic orbital electron populations 1.70009 1.05252 1.25708 1.53426 1.25131 0.95300 0.98463 1.00461 0.86383 0.78928 0.83382 0.78109 1.21052 1.21595 1.20839 1.19083 0.92005 0.84581 1.43025 0.91932 1.44056 1.37502 1.02284 1.47884 1.20971 0.97997 0.86412 0.92377 1.22640 0.89733 0.99604 0.96430 1.62021 1.37153 1.04108 1.21259 1.22747 0.95760 0.92405 0.93208 0.93075 1.22696 1.01931 0.93282 0.98110 1.22223 0.94465 0.94548 0.91459 1.48346 1.49652 1.10574 1.26583 1.19479 0.79981 0.88550 0.79680 1.90758 1.37222 1.57512 1.53190 1.22512 0.99821 0.93924 0.85556 0.89065 1.23152 1.00633 0.82379 0.97892 1.88127 1.86097 1.25786 1.29060 1.23337 0.98289 1.01442 0.82630 1.23357 1.00657 0.82432 0.98906 1.88231 1.85984 1.26511 1.26241 1.22286 0.98663 0.81206 0.98270 1.22956 0.98973 0.89661 0.98084 1.20785 0.89801 0.95491 0.88432 0.93503 0.95664 0.92599 0.91826 0.95387 0.89986 0.88948 0.90965 0.91242 0.86913 0.91149 0.87306 0.91661 0.91808 0.87048 0.89736 0.90393 0.95511 0.91870 0.95341 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.39 55.49 0.63 -25.49 16 2 C 0.01 0.16 4.93 -17.43 -0.09 0.07 16 3 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.26 -7.02 9.60 -15.06 -0.14 -7.16 16 8 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 9 N -0.59 -14.78 3.02 -172.02 -0.52 -15.30 16 10 C 0.15 3.05 6.69 -3.60 -0.02 3.03 16 11 C 0.05 0.75 5.50 -3.70 -0.02 0.73 16 12 N -0.52 -8.49 4.53 -223.78 -1.01 -9.51 16 13 C 0.07 0.88 2.71 -65.56 -0.18 0.71 16 14 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 15 C -0.12 -1.16 5.47 -24.89 -0.14 -1.29 16 16 C 0.10 0.78 6.13 -3.06 -0.02 0.76 16 17 N -0.62 -7.11 3.33 -170.52 -0.57 -7.67 16 18 C 0.54 7.09 7.13 -10.98 -0.08 7.01 16 19 O -0.51 -9.08 16.88 -13.75 -0.23 -9.31 16 20 C 0.04 0.44 2.64 -27.81 -0.07 0.37 16 21 H 0.09 0.76 7.66 -51.93 -0.40 0.36 16 22 C 0.04 0.32 6.23 37.23 0.23 0.55 16 23 O -0.37 -3.22 10.85 -48.76 -0.53 -3.75 16 24 C 0.02 0.13 7.05 37.23 0.26 0.39 16 25 C 0.02 0.17 7.05 37.23 0.26 0.43 16 26 O -0.35 -4.06 10.08 -62.24 -0.63 -4.69 16 27 C 0.12 1.57 5.17 -2.53 -0.01 1.56 16 28 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 29 C 0.18 4.29 5.39 -3.61 -0.02 4.27 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 33 H 0.06 0.86 6.97 -51.93 -0.36 0.50 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.46 6.38 -51.93 -0.33 0.12 16 38 H 0.07 0.45 7.84 -51.93 -0.41 0.05 16 39 H 0.11 0.75 6.10 -51.93 -0.32 0.43 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.08 1.15 7.79 -51.93 -0.40 0.74 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.10 6.70 -51.93 -0.35 0.75 16 49 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 2.16 6.39 -51.93 -0.33 1.83 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -33.73 383.77 -10.50 -44.23 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.35 Total: -2.90 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -0.06 Total: 12.01 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -1.47 Total: -57.97 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -1.39 Total: -17.74 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.73 -10.50 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051988499.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.804 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds