Wall clock time and date at job start Sat Apr 11 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99947 * 2 1 4 4 H 1.48505 * 109.47268 * 240.00258 * 3 2 1 5 5 H 1.48506 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47294 * 120.00013 * 3 2 1 7 7 C 1.38807 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00422 * 191.13300 * 7 2 1 9 9 N 1.36942 * 120.00079 * 11.13240 * 7 2 1 10 10 C 1.47741 * 121.65512 * 211.54907 * 9 7 2 11 11 C 1.52977 * 108.82671 * 275.72396 * 10 9 7 12 12 N 1.47655 * 108.91572 * 305.18403 * 11 10 9 13 13 C 1.36130 * 116.57720 * 97.49703 * 12 11 10 14 14 O 1.21280 * 120.46648 * 356.90482 * 13 12 11 15 15 C 1.50703 * 119.07043 * 176.88449 * 13 12 11 16 16 C 1.52973 * 109.53697 * 115.52686 * 15 13 12 17 17 N 1.47764 * 108.82306 * 306.57970 * 16 15 13 18 18 C 1.34774 * 121.65946 * 270.98921 * 17 16 15 19 19 O 1.21280 * 120.00389 * 185.15332 * 18 17 16 20 20 C 1.50701 * 119.99900 * 5.15437 * 18 17 16 21 21 C 1.53207 * 109.54239 * 265.19550 * 20 18 17 22 22 C 1.53090 * 109.15302 * 183.15631 * 21 20 18 23 23 O 1.42911 * 109.42286 * 57.60478 * 22 21 20 24 24 C 1.42907 * 114.09247 * 298.83622 * 23 22 21 25 25 C 1.53085 * 109.41783 * 61.15757 * 24 23 22 26 26 C 1.47749 * 116.68278 * 91.26085 * 17 16 15 27 27 C 1.47759 * 121.65396 * 31.57542 * 9 7 2 28 28 H 0.97001 * 120.00146 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.57600 * 155.92293 * 10 9 7 30 30 H 1.09000 * 109.57397 * 35.53043 * 10 9 7 31 31 H 1.08989 * 109.56649 * 185.34928 * 11 10 9 32 32 H 1.09001 * 109.56364 * 65.00764 * 11 10 9 33 33 H 0.96997 * 121.70980 * 277.47571 * 12 11 10 34 34 H 1.09002 * 109.46260 * 355.50701 * 15 13 12 35 35 H 1.09000 * 109.46286 * 235.54673 * 15 13 12 36 36 H 1.09001 * 109.58313 * 186.77796 * 16 15 13 37 37 H 1.09000 * 109.68806 * 66.44504 * 16 15 13 38 38 H 1.08998 * 109.61787 * 25.40704 * 20 18 17 39 39 H 1.09002 * 109.53850 * 63.24359 * 21 20 18 40 40 H 1.09001 * 109.51325 * 303.05542 * 21 20 18 41 41 H 1.08992 * 109.48300 * 297.61594 * 22 21 20 42 42 H 1.09003 * 109.48052 * 177.58563 * 22 21 20 43 43 H 1.09009 * 109.47655 * 181.14341 * 24 23 22 44 44 H 1.08999 * 109.47744 * 301.16259 * 24 23 22 45 45 H 1.09010 * 109.52226 * 62.29833 * 25 24 23 46 46 H 1.09003 * 109.52248 * 182.41533 * 25 24 23 47 47 H 1.09000 * 109.57833 * 351.92277 * 26 17 16 48 48 H 1.08999 * 109.57715 * 112.33221 * 26 17 16 49 49 H 1.09003 * 109.58222 * 161.70294 * 27 9 7 50 50 H 1.08994 * 109.58687 * 281.97050 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0750 -1.2110 0.1801 9 7 1.3449 -2.3768 -0.2300 10 6 1.7775 -3.6466 0.3888 11 6 2.8826 -4.2634 -0.4706 12 7 2.3914 -4.3995 -1.8564 13 6 2.7449 -3.4148 -2.7274 14 8 3.3818 -2.4559 -2.3458 15 6 2.3340 -3.5333 -4.1725 16 6 1.3660 -2.4019 -4.5235 17 7 0.2517 -2.4097 -3.5531 18 6 -0.8607 -3.1422 -3.7593 19 8 -1.7953 -3.0548 -2.9913 20 6 -0.9432 -4.0698 -4.9440 21 6 -1.6362 -3.3541 -6.1080 22 6 -1.7860 -4.3286 -7.2791 23 8 -2.5245 -5.4751 -6.8519 24 6 -1.9010 -6.2109 -5.7973 25 6 -1.7557 -5.3122 -4.5665 26 6 0.4149 -1.5697 -2.3487 27 6 0.1589 -2.4373 -1.1094 28 1 -0.4850 0.8400 0.0004 29 1 0.9322 -4.3326 0.4443 30 1 2.1595 -3.4529 1.3912 31 1 3.1449 -5.2457 -0.0782 32 1 3.7599 -3.6167 -0.4563 33 1 1.8452 -5.1522 -2.1321 34 1 1.8439 -4.4935 -4.3332 35 1 3.2171 -3.4658 -4.8078 36 1 0.9753 -2.5544 -5.5296 37 1 1.8861 -1.4453 -4.4747 38 1 0.0607 -4.3685 -5.2456 39 1 -1.0357 -2.4994 -6.4198 40 1 -2.6212 -3.0119 -5.7905 41 1 -0.7992 -4.6390 -7.6223 42 1 -2.3168 -3.8377 -8.0949 43 1 -2.5146 -7.0759 -5.5455 44 1 -0.9157 -6.5461 -6.1212 45 1 -2.7432 -5.0096 -4.2179 46 1 -1.2417 -5.8583 -3.7754 47 1 1.4309 -1.1766 -2.3125 48 1 -0.2972 -0.7451 -2.3792 49 1 -0.0176 -3.4688 -1.4143 50 1 -0.7125 -2.0605 -0.5740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070931109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:14 Heat of formation + Delta-G solvation = -79.063327 kcal Electronic energy + Delta-G solvation = -33419.494687 eV Core-core repulsion = 29254.989553 eV Total energy + Delta-G solvation = -4164.505134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39862 -39.21167 -38.25416 -35.83505 -35.39732 -33.90514 -33.45091 -31.34680 -31.26562 -30.41410 -29.15518 -26.92291 -25.68882 -24.25854 -23.79815 -23.56046 -22.22265 -20.42748 -20.13513 -19.77443 -18.59040 -17.25561 -16.61430 -16.45785 -16.22881 -15.92011 -15.65124 -15.22029 -14.97140 -14.81702 -14.53127 -14.18432 -13.90167 -13.59318 -13.46919 -13.35074 -13.21163 -12.89085 -12.65628 -12.55792 -12.46506 -12.07460 -11.71507 -11.63139 -11.45358 -11.34410 -11.19625 -11.07644 -10.82584 -10.74802 -10.57544 -10.48921 -10.22198 -9.97265 -9.91600 -9.79756 -9.66335 -9.10801 -9.05208 -8.66133 -8.26870 -8.05659 -6.43366 -5.56799 -3.11516 3.01496 3.24571 3.44979 3.47263 3.51301 3.54985 3.69985 3.84399 4.53107 4.59189 4.61391 4.64031 4.82132 4.91170 5.02011 5.03539 5.19747 5.25017 5.30026 5.38278 5.44934 5.47320 5.48900 5.54751 5.57556 5.67027 5.70985 5.82970 5.88721 6.00106 6.03549 6.14662 6.19385 6.22268 6.53957 6.61272 6.62947 6.78437 6.95813 6.99220 7.02280 7.13489 7.55015 7.78370 7.99044 8.11395 8.12476 8.52157 8.69115 8.93531 9.33835 9.93097 10.56913 11.43257 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.004386 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.296207 B = 6382.006774 C = 6910.588441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.284 1.284 7 C -0.220 4.220 8 H 0.061 0.939 9 N -0.585 5.585 10 C 0.127 3.873 11 C 0.089 3.911 12 N -0.728 5.728 13 C 0.519 3.481 14 O -0.505 6.505 15 C -0.161 4.161 16 C 0.117 3.883 17 N -0.615 5.615 18 C 0.517 3.483 19 O -0.529 6.529 20 C -0.111 4.111 21 C -0.145 4.145 22 C 0.065 3.935 23 O -0.383 6.383 24 C 0.063 3.937 25 C -0.139 4.139 26 C 0.115 3.885 27 C 0.178 3.822 28 H 0.251 0.749 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.391 0.609 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.020 0.980 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -13.102 -14.296 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.725 3.275 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.079 0.921 9 N -0.308 5.308 10 C -0.001 4.001 11 C -0.038 4.038 12 N -0.381 5.381 13 C 0.304 3.696 14 O -0.378 6.378 15 C -0.203 4.203 16 C -0.008 4.008 17 N -0.350 5.350 18 C 0.303 3.697 19 O -0.405 6.405 20 C -0.132 4.132 21 C -0.183 4.183 22 C -0.012 4.012 23 O -0.302 6.302 24 C -0.014 4.014 25 C -0.177 4.177 26 C -0.006 4.006 27 C 0.053 3.947 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.225 0.775 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.078 0.922 49 H 0.039 0.961 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.809 -12.223 -13.645 18.337 hybrid contribution 0.558 0.717 -0.078 0.912 sum 1.367 -11.506 -13.723 17.961 Atomic orbital electron populations 1.70009 1.04952 1.25113 1.54495 1.25120 0.95193 0.97890 1.01483 0.86484 0.78898 0.83955 0.78171 1.21091 1.21932 1.21065 1.18810 0.90588 0.83432 1.42231 0.92082 1.44428 1.32582 1.02868 1.50959 1.21418 0.94725 0.89072 0.94903 1.22389 1.00163 0.99235 0.81972 1.46291 1.55170 1.25659 1.11005 1.20354 0.79780 0.82522 0.86968 1.90766 1.39047 1.29200 1.78818 1.22238 1.01324 1.00541 0.96159 1.21694 0.87658 0.99109 0.92317 1.49226 1.16091 1.46238 1.23410 1.20198 0.82202 0.80978 0.86275 1.90723 1.36414 1.66089 1.47301 1.21429 1.00722 0.96033 0.95042 1.22143 1.02417 0.98748 0.94968 1.22562 0.96463 0.86323 0.95869 1.87938 1.48433 1.40326 1.53498 1.22602 0.97931 0.94097 0.86735 1.22058 1.02285 0.95153 0.98210 1.22721 1.03869 0.92365 0.81612 1.21176 0.90959 0.93504 0.89096 0.93877 0.94476 0.93012 0.92901 0.89865 0.77532 0.90873 0.88299 0.90505 0.89209 0.89539 0.90498 0.90090 0.93093 0.88665 0.88652 0.93255 0.89551 0.90674 0.87620 0.92239 0.96149 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 10.20 55.49 0.57 -25.70 16 2 C 0.00 0.04 4.32 -17.43 -0.08 -0.04 16 3 Si 0.89 22.45 29.57 -169.99 -5.03 17.42 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -5.98 7.44 -15.06 -0.11 -6.09 16 8 H 0.06 1.72 7.85 -52.48 -0.41 1.31 16 9 N -0.59 -14.23 1.82 -170.97 -0.31 -14.54 16 10 C 0.13 2.55 6.10 -3.37 -0.02 2.53 16 11 C 0.09 1.48 6.56 -3.42 -0.02 1.46 16 12 N -0.73 -11.10 4.58 -59.16 -0.27 -11.38 16 13 C 0.52 8.71 4.52 -10.37 -0.05 8.67 16 14 O -0.51 -10.89 13.59 5.56 0.08 -10.81 16 15 C -0.16 -1.94 6.07 -27.90 -0.17 -2.11 16 16 C 0.12 1.55 5.26 -3.36 -0.02 1.53 16 17 N -0.62 -10.66 2.39 -171.41 -0.41 -11.07 16 18 C 0.52 8.72 5.95 -10.99 -0.07 8.66 16 19 O -0.53 -11.37 15.03 5.56 0.08 -11.29 16 20 C -0.11 -1.31 1.81 -91.58 -0.17 -1.47 16 21 C -0.14 -1.54 5.33 -26.58 -0.14 -1.68 16 22 C 0.06 0.57 6.84 37.20 0.25 0.83 16 23 O -0.38 -4.19 10.77 -35.23 -0.38 -4.57 16 24 C 0.06 0.58 6.84 37.20 0.25 0.83 16 25 C -0.14 -1.57 5.13 -26.60 -0.14 -1.71 16 26 C 0.11 2.62 3.73 -3.14 -0.01 2.61 16 27 C 0.18 4.30 3.55 -3.13 -0.01 4.29 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 30 H 0.05 1.05 8.12 -51.93 -0.42 0.63 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.61 7.03 -51.93 -0.37 1.25 16 33 H 0.39 4.92 8.73 -40.82 -0.36 4.57 16 34 H 0.07 0.70 6.72 -51.93 -0.35 0.35 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 0.75 6.21 -51.93 -0.32 0.43 16 37 H 0.09 1.32 7.81 -51.93 -0.41 0.92 16 38 H 0.09 0.83 5.46 -51.93 -0.28 0.55 16 39 H 0.08 0.73 7.47 -51.93 -0.39 0.34 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 1.19 7.76 -51.92 -0.40 0.78 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.11 2.66 4.34 -51.93 -0.23 2.43 16 48 H 0.06 1.55 7.61 -51.93 -0.39 1.16 16 49 H 0.02 0.46 6.02 -51.93 -0.31 0.15 16 50 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 LS Contribution 368.04 15.07 5.55 5.55 Total: -1.00 -34.32 368.04 -8.54 -42.86 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.92 Total: 5.23 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: -0.49 Total: 18.31 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.43 Total: -62.69 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.22 Total: -26.67 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.32 -8.54 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070931109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.206 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds