Wall clock time and date at job start Sat Apr 11 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99947 * 2 1 4 4 H 1.48505 * 109.47268 * 240.00258 * 3 2 1 5 5 H 1.48506 * 109.47366 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47294 * 120.00013 * 3 2 1 7 7 C 1.38807 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00422 * 191.13300 * 7 2 1 9 9 N 1.36942 * 120.00079 * 11.13240 * 7 2 1 10 10 C 1.47741 * 121.65512 * 211.54907 * 9 7 2 11 11 C 1.52977 * 108.82671 * 275.72396 * 10 9 7 12 12 N 1.47655 * 108.91572 * 305.18403 * 11 10 9 13 13 C 1.36130 * 116.57720 * 97.49703 * 12 11 10 14 14 O 1.21280 * 120.46648 * 356.90482 * 13 12 11 15 15 C 1.50703 * 119.07043 * 176.88449 * 13 12 11 16 16 C 1.52973 * 109.53697 * 115.52686 * 15 13 12 17 17 N 1.47764 * 108.82306 * 306.57970 * 16 15 13 18 18 C 1.34774 * 121.65946 * 270.98921 * 17 16 15 19 19 O 1.21280 * 120.00389 * 185.15332 * 18 17 16 20 20 C 1.50701 * 119.99900 * 5.15437 * 18 17 16 21 21 C 1.53207 * 109.54239 * 265.19550 * 20 18 17 22 22 C 1.53090 * 109.15302 * 183.15631 * 21 20 18 23 23 O 1.42911 * 109.42286 * 57.60478 * 22 21 20 24 24 C 1.42907 * 114.09247 * 298.83622 * 23 22 21 25 25 C 1.53085 * 109.41783 * 61.15757 * 24 23 22 26 26 C 1.47749 * 116.68278 * 91.26085 * 17 16 15 27 27 C 1.47759 * 121.65396 * 31.57542 * 9 7 2 28 28 H 0.97001 * 120.00146 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.57600 * 155.92293 * 10 9 7 30 30 H 1.09000 * 109.57397 * 35.53043 * 10 9 7 31 31 H 1.08989 * 109.56649 * 185.34928 * 11 10 9 32 32 H 1.09001 * 109.56364 * 65.00764 * 11 10 9 33 33 H 0.96997 * 121.70980 * 277.47571 * 12 11 10 34 34 H 1.09002 * 109.46260 * 355.50701 * 15 13 12 35 35 H 1.09000 * 109.46286 * 235.54673 * 15 13 12 36 36 H 1.09001 * 109.58313 * 186.77796 * 16 15 13 37 37 H 1.09000 * 109.68806 * 66.44504 * 16 15 13 38 38 H 1.08998 * 109.61787 * 25.40704 * 20 18 17 39 39 H 1.09002 * 109.53850 * 63.24359 * 21 20 18 40 40 H 1.09001 * 109.51325 * 303.05542 * 21 20 18 41 41 H 1.08992 * 109.48300 * 297.61594 * 22 21 20 42 42 H 1.09003 * 109.48052 * 177.58563 * 22 21 20 43 43 H 1.09009 * 109.47655 * 181.14341 * 24 23 22 44 44 H 1.08999 * 109.47744 * 301.16259 * 24 23 22 45 45 H 1.09010 * 109.52226 * 62.29833 * 25 24 23 46 46 H 1.09003 * 109.52248 * 182.41533 * 25 24 23 47 47 H 1.09000 * 109.57833 * 351.92277 * 26 17 16 48 48 H 1.08999 * 109.57715 * 112.33221 * 26 17 16 49 49 H 1.09003 * 109.58222 * 161.70294 * 27 9 7 50 50 H 1.08994 * 109.58687 * 281.97050 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0750 -1.2110 0.1801 9 7 1.3449 -2.3768 -0.2300 10 6 1.7775 -3.6466 0.3888 11 6 2.8826 -4.2634 -0.4706 12 7 2.3914 -4.3995 -1.8564 13 6 2.7449 -3.4148 -2.7274 14 8 3.3818 -2.4559 -2.3458 15 6 2.3340 -3.5333 -4.1725 16 6 1.3660 -2.4019 -4.5235 17 7 0.2517 -2.4097 -3.5531 18 6 -0.8607 -3.1422 -3.7593 19 8 -1.7953 -3.0548 -2.9913 20 6 -0.9432 -4.0698 -4.9440 21 6 -1.6362 -3.3541 -6.1080 22 6 -1.7860 -4.3286 -7.2791 23 8 -2.5245 -5.4751 -6.8519 24 6 -1.9010 -6.2109 -5.7973 25 6 -1.7557 -5.3122 -4.5665 26 6 0.4149 -1.5697 -2.3487 27 6 0.1589 -2.4373 -1.1094 28 1 -0.4850 0.8400 0.0004 29 1 0.9322 -4.3326 0.4443 30 1 2.1595 -3.4529 1.3912 31 1 3.1449 -5.2457 -0.0782 32 1 3.7599 -3.6167 -0.4563 33 1 1.8452 -5.1522 -2.1321 34 1 1.8439 -4.4935 -4.3332 35 1 3.2171 -3.4658 -4.8078 36 1 0.9753 -2.5544 -5.5296 37 1 1.8861 -1.4453 -4.4747 38 1 0.0607 -4.3685 -5.2456 39 1 -1.0357 -2.4994 -6.4198 40 1 -2.6212 -3.0119 -5.7905 41 1 -0.7992 -4.6390 -7.6223 42 1 -2.3168 -3.8377 -8.0949 43 1 -2.5146 -7.0759 -5.5455 44 1 -0.9157 -6.5461 -6.1212 45 1 -2.7432 -5.0096 -4.2179 46 1 -1.2417 -5.8583 -3.7754 47 1 1.4309 -1.1766 -2.3125 48 1 -0.2972 -0.7451 -2.3792 49 1 -0.0176 -3.4688 -1.4143 50 1 -0.7125 -2.0605 -0.5740 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070931109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:14 Heat of formation + Delta-G solvation = -105.035338 kcal Electronic energy + Delta-G solvation = -33420.620918 eV Core-core repulsion = 29254.989553 eV Total energy + Delta-G solvation = -4165.631365 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.62308 -40.38746 -39.38967 -37.63519 -36.79873 -35.30271 -34.58449 -33.16492 -32.03506 -31.85426 -30.77362 -28.50903 -27.11825 -25.71031 -25.06428 -24.45291 -23.67602 -21.99138 -21.40075 -21.09393 -19.84729 -18.67069 -18.25012 -17.63621 -17.48976 -16.91610 -16.88524 -16.56601 -16.36021 -16.28257 -15.66739 -15.48512 -15.33020 -15.06374 -14.95125 -14.71834 -14.45190 -14.30173 -13.99251 -13.88518 -13.64727 -13.23339 -13.17356 -13.08834 -12.93922 -12.75810 -12.60055 -12.33800 -12.22343 -12.18753 -12.02370 -11.87507 -11.78054 -11.64843 -11.58819 -11.39677 -10.79418 -10.65368 -10.46753 -10.27238 -9.84763 -9.58684 -8.47414 -7.70502 -5.27696 1.40896 1.42835 1.49677 1.69598 1.94962 2.12194 2.52310 2.66612 3.04408 3.37237 3.47086 3.68450 3.75578 3.80538 3.93718 4.01646 4.07720 4.23820 4.36021 4.38436 4.42152 4.50381 4.53638 4.57428 4.62176 4.66602 4.72344 4.72764 4.77293 4.83348 4.85156 4.87465 4.89735 4.99967 5.06044 5.13865 5.15799 5.22343 5.30257 5.35189 5.67653 5.76078 5.80198 5.82310 6.34295 6.41102 6.65161 6.92584 7.20465 7.31868 7.70154 7.88351 8.47749 9.25418 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.004386 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.296207 B = 6382.006774 C = 6910.588441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.046 4.046 3 Si 0.945 3.055 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.208 4.208 8 H 0.050 0.950 9 N -0.597 5.597 10 C 0.119 3.881 11 C 0.103 3.897 12 N -0.720 5.720 13 C 0.507 3.493 14 O -0.560 6.560 15 C -0.151 4.151 16 C 0.111 3.889 17 N -0.616 5.616 18 C 0.513 3.487 19 O -0.585 6.585 20 C -0.097 4.097 21 C -0.144 4.144 22 C 0.066 3.934 23 O -0.406 6.406 24 C 0.067 3.933 25 C -0.139 4.139 26 C 0.141 3.859 27 C 0.201 3.799 28 H 0.242 0.758 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.409 0.591 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.127 0.873 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.012 0.988 49 H 0.034 0.966 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -16.161 -17.523 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.241 4.241 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.339 4.339 8 H 0.067 0.933 9 N -0.321 5.321 10 C -0.008 4.008 11 C -0.024 4.024 12 N -0.374 5.374 13 C 0.294 3.706 14 O -0.437 6.437 15 C -0.192 4.192 16 C -0.012 4.012 17 N -0.349 5.349 18 C 0.302 3.698 19 O -0.465 6.465 20 C -0.118 4.118 21 C -0.183 4.183 22 C -0.010 4.010 23 O -0.325 6.325 24 C -0.009 4.009 25 C -0.177 4.177 26 C 0.018 3.982 27 C 0.076 3.924 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.245 0.755 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.030 0.970 49 H 0.052 0.948 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 2.668 -15.357 -16.909 22.997 hybrid contribution -0.026 1.612 0.972 1.883 sum 2.642 -13.744 -15.937 21.210 Atomic orbital electron populations 1.70193 1.06108 1.24789 1.56532 1.25648 0.95675 1.00365 1.02381 0.85672 0.77728 0.81009 0.78116 1.21168 1.22388 1.20359 1.18807 0.90052 0.84602 1.40453 0.93253 1.44566 1.32153 1.03778 1.51564 1.21667 0.96259 0.87567 0.95258 1.22072 0.97310 1.00635 0.82393 1.46271 1.54939 1.26003 1.10195 1.21299 0.78622 0.81584 0.89088 1.90752 1.41444 1.31324 1.80192 1.22264 1.02484 1.01579 0.92836 1.22012 0.86571 0.99194 0.93407 1.49169 1.17853 1.45375 1.22488 1.21249 0.80751 0.80719 0.87033 1.90712 1.38347 1.67772 1.49677 1.21460 1.03129 0.94679 0.92526 1.22180 1.00833 0.99925 0.95317 1.22705 0.98178 0.85242 0.94861 1.87926 1.49781 1.41005 1.53798 1.22693 0.99755 0.93405 0.85087 1.22067 1.00300 0.95470 0.99851 1.21939 1.00693 0.91671 0.83867 1.20737 0.88887 0.93779 0.89024 0.94920 0.93416 0.93693 0.88301 0.92585 0.75471 0.87036 0.85073 0.85510 0.91107 0.85560 0.88951 0.93357 0.89868 0.87542 0.87782 0.90068 0.93232 0.89962 0.89744 0.96955 0.94810 0.98566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 10.20 21.65 0.22 -57.31 16 2 C -0.05 -2.65 4.32 84.86 0.37 -2.29 16 3 Si 0.94 47.95 29.57 68.60 2.03 49.98 16 4 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.21 -11.70 7.44 84.03 0.63 -11.07 16 8 H 0.05 2.88 7.85 -2.91 -0.02 2.86 16 9 N -0.60 -29.93 1.82 -694.82 -1.27 -31.19 16 10 C 0.12 4.76 6.10 86.13 0.53 5.28 16 11 C 0.10 3.24 6.56 86.15 0.57 3.80 16 12 N -0.72 -19.95 4.58 -458.70 -2.10 -22.05 16 13 C 0.51 15.86 4.52 87.44 0.40 16.25 16 14 O -0.56 -23.93 13.59 -3.03 -0.04 -23.97 16 15 C -0.15 -2.91 6.07 29.84 0.18 -2.73 16 16 C 0.11 2.58 5.26 86.13 0.45 3.03 16 17 N -0.62 -20.89 2.39 -814.60 -1.95 -22.84 16 18 C 0.51 16.93 5.95 87.66 0.52 17.45 16 19 O -0.59 -26.20 15.03 -3.03 -0.05 -26.25 16 20 C -0.10 -1.96 1.81 -11.41 -0.02 -1.98 16 21 C -0.14 -2.65 5.33 30.69 0.16 -2.48 16 22 C 0.07 0.88 6.84 72.01 0.49 1.37 16 23 O -0.41 -7.44 10.77 -148.98 -1.60 -9.04 16 24 C 0.07 0.95 6.84 72.01 0.49 1.44 16 25 C -0.14 -2.79 5.13 30.68 0.16 -2.64 16 26 C 0.14 6.74 3.73 86.28 0.32 7.06 16 27 C 0.20 10.18 3.55 86.28 0.31 10.48 16 28 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.05 1.79 7.83 -2.39 -0.02 1.77 16 30 H 0.04 1.84 8.12 -2.39 -0.02 1.82 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.13 7.03 -2.39 -0.02 2.11 16 33 H 0.41 8.53 8.73 -92.71 -0.81 7.73 16 34 H 0.11 1.33 6.72 -2.39 -0.02 1.31 16 35 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.13 1.74 6.21 -2.39 -0.01 1.73 16 37 H 0.07 1.97 7.81 -2.39 -0.02 1.96 16 38 H 0.13 1.57 5.46 -2.39 -0.01 1.55 16 39 H 0.09 1.40 7.47 -2.39 -0.02 1.38 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.05 1.37 7.76 -2.38 -0.02 1.35 16 46 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.08 4.43 4.34 -2.39 -0.01 4.42 16 48 H 0.01 0.68 7.61 -2.39 -0.02 0.66 16 49 H 0.03 1.57 6.02 -2.39 -0.01 1.56 16 50 H 0.00 -0.23 6.91 -2.39 -0.02 -0.24 16 Total: -1.00 -85.16 368.04 0.94 -84.23 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.15 Total: 15.45 kcal Atomic # 6 Polarization: 37.46 SS G_CDS: 5.55 Total: 43.00 kcal Atomic # 7 Polarization: -128.30 SS G_CDS: -5.10 Total: -133.39 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -1.69 Total: -59.26 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -85.16 0.94 -84.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070931109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.810 kcal (2) G-P(sol) polarization free energy of solvation -85.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds