Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47110 * 299.99775 * 3 2 1 6 6 H 1.48498 * 109.47092 * 59.99500 * 3 2 1 7 7 C 1.38810 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99745 * 192.12427 * 7 2 1 9 9 N 1.36935 * 120.00179 * 12.11908 * 7 2 1 10 10 C 1.47760 * 121.65312 * 209.64990 * 9 7 2 11 11 C 1.52993 * 108.81560 * 276.87165 * 10 9 7 12 12 N 1.47116 * 109.14290 * 302.06357 * 11 10 9 13 13 C 1.35495 * 118.11884 * 99.68113 * 12 11 10 14 14 O 1.21273 * 120.23826 * 0.08547 * 13 12 11 15 15 C 1.50695 * 119.52576 * 180.10433 * 13 12 11 16 16 C 1.53003 * 109.45421 * 115.82639 * 15 13 12 17 17 N 1.47748 * 108.78720 * 304.78399 * 16 15 13 18 18 C 1.34787 * 121.64232 * 271.57327 * 17 16 15 19 19 O 1.21277 * 119.99794 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99769 * 0.02562 * 18 17 16 21 21 C 1.53001 * 109.46725 * 180.02562 * 20 18 17 22 22 H 1.08998 * 110.27841 * 55.63527 * 21 20 18 23 23 C 1.54952 * 110.31030 * 177.83372 * 21 20 18 24 24 C 1.55306 * 100.94005 * 155.35806 * 23 21 20 25 25 C 1.54374 * 102.25481 * 325.86709 * 24 23 21 26 26 O 1.43241 * 107.59182 * 21.35796 * 25 24 23 27 27 C 1.47764 * 116.71122 * 91.54860 * 17 16 15 28 28 C 1.47755 * 121.64660 * 29.62517 * 9 7 2 29 29 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58395 * 157.07460 * 10 9 7 31 31 H 1.08998 * 109.58144 * 36.67198 * 10 9 7 32 32 H 1.09001 * 109.52896 * 182.16076 * 11 10 9 33 33 H 1.09002 * 109.53040 * 61.96128 * 11 10 9 34 34 H 0.96998 * 120.93503 * 279.65463 * 12 11 10 35 35 H 1.08996 * 109.47147 * 235.81816 * 15 13 12 36 36 H 1.08999 * 109.47556 * 355.82827 * 15 13 12 37 37 H 1.08997 * 109.58794 * 64.57101 * 16 15 13 38 38 H 1.08995 * 109.58499 * 184.85156 * 16 15 13 39 39 H 1.08998 * 109.47402 * 299.99713 * 20 18 17 40 40 H 1.09000 * 109.47604 * 60.00281 * 20 18 17 41 41 H 1.09001 * 111.11932 * 273.27611 * 23 21 20 42 42 H 1.08992 * 111.12156 * 37.43705 * 23 21 20 43 43 H 1.08997 * 110.84532 * 207.67234 * 24 23 21 44 44 H 1.09004 * 111.02080 * 84.13680 * 24 23 21 45 45 H 1.09001 * 109.82870 * 261.84020 * 25 24 23 46 46 H 1.09002 * 109.90797 * 140.91174 * 25 24 23 47 47 H 1.09001 * 109.58552 * 350.54905 * 27 17 16 48 48 H 1.08996 * 109.58529 * 110.96321 * 27 17 16 49 49 H 1.08995 * 109.57627 * 285.14148 * 28 9 7 50 50 H 1.08997 * 109.57714 * 164.73832 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0722 -1.2124 0.1970 9 7 1.3486 -2.3749 -0.2479 10 6 1.7969 -3.6567 0.3348 11 6 2.9136 -4.2319 -0.5384 12 7 2.4122 -4.4054 -1.9106 13 6 2.7270 -3.4609 -2.8297 14 8 3.4052 -2.5056 -2.5161 15 6 2.2281 -3.6057 -4.2443 16 6 1.2713 -2.4564 -4.5673 17 7 0.1937 -2.4359 -3.5566 18 6 -0.9351 -3.1559 -3.7119 19 8 -1.8004 -3.1174 -2.8630 20 6 -1.1214 -4.0096 -4.9397 21 6 -2.4768 -4.7159 -4.8687 22 1 -3.2766 -3.9865 -4.7412 23 6 -2.7124 -5.5574 -6.1484 24 6 -3.7128 -6.6218 -5.6211 25 6 -3.2391 -6.8244 -4.1659 26 8 -2.4893 -5.6634 -3.7891 27 6 0.4149 -1.5877 -2.3671 28 6 0.1506 -2.4212 -1.1115 29 1 -0.4850 0.8401 -0.0004 30 1 0.9612 -4.3558 0.3664 31 1 2.1726 -3.4876 1.3439 32 1 3.2270 -5.1970 -0.1403 33 1 3.7613 -3.5466 -0.5443 34 1 1.8719 -5.1744 -2.1506 35 1 3.0732 -3.5792 -4.9321 36 1 1.7038 -4.5555 -4.3492 37 1 1.8137 -1.5113 -4.5421 38 1 0.8427 -2.6054 -5.5584 39 1 -1.0863 -3.3800 -5.8287 40 1 -0.3260 -4.7532 -4.9894 41 1 -3.1604 -4.9543 -6.9381 42 1 -1.7871 -6.0223 -6.4886 43 1 -3.6285 -7.5483 -6.1890 44 1 -4.7351 -6.2445 -5.6473 45 1 -2.6065 -7.7097 -4.1028 46 1 -4.1004 -6.9378 -3.5075 47 1 1.4449 -1.2313 -2.3589 48 1 -0.2676 -0.7383 -2.3920 49 1 -0.7036 -2.0103 -0.5735 50 1 -0.0557 -3.4533 -1.3950 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070942239.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -102.502201 kcal Electronic energy + Delta-G solvation = -33045.813424 eV Core-core repulsion = 28880.291904 eV Total energy + Delta-G solvation = -4165.521520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34512 -40.40489 -39.59800 -37.65568 -36.68501 -35.29823 -33.39289 -33.13537 -32.59942 -31.79765 -30.70787 -28.58980 -27.46424 -25.93945 -24.99881 -23.81138 -22.53052 -22.04202 -21.96207 -21.12163 -19.72904 -18.59802 -18.18995 -17.82383 -17.44498 -17.36784 -16.82342 -16.46397 -16.32601 -16.19700 -15.82918 -15.35888 -15.25450 -14.98392 -14.77768 -14.56976 -14.26661 -14.06551 -13.93377 -13.78786 -13.42142 -13.21882 -13.11352 -12.91514 -12.87974 -12.75959 -12.51827 -12.31696 -12.27016 -12.07623 -12.01976 -11.93880 -11.83661 -11.76576 -11.59994 -11.56592 -10.71267 -10.49839 -10.45511 -10.35483 -9.85532 -9.51358 -8.50113 -7.68674 -5.26387 1.39615 1.42140 1.53063 1.87549 1.97572 2.19173 2.52846 2.67767 2.99654 3.37455 3.60794 3.64888 3.75001 3.91815 3.96902 4.08567 4.11068 4.26376 4.32255 4.40801 4.43487 4.54248 4.57264 4.60061 4.66999 4.69282 4.73810 4.79064 4.85804 4.88586 4.90047 4.91612 4.97786 5.04697 5.07846 5.09411 5.13663 5.27271 5.31774 5.36415 5.68908 5.79517 5.83108 5.88512 6.28549 6.40141 6.74944 6.89836 7.21063 7.45813 7.68676 7.89134 8.47772 9.26441 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014688 B = 0.004147 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.830327 B = 6750.666687 C = 7160.632544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.047 4.047 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.213 4.213 8 H 0.051 0.949 9 N -0.600 5.600 10 C 0.119 3.881 11 C 0.103 3.897 12 N -0.716 5.716 13 C 0.507 3.493 14 O -0.570 6.570 15 C -0.149 4.149 16 C 0.113 3.887 17 N -0.621 5.621 18 C 0.503 3.497 19 O -0.577 6.577 20 C -0.127 4.127 21 C 0.088 3.912 22 H 0.046 0.954 23 C -0.138 4.138 24 C -0.150 4.150 25 C 0.037 3.963 26 O -0.401 6.401 27 C 0.143 3.857 28 C 0.201 3.799 29 H 0.242 0.758 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.406 0.594 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.011 0.989 49 H 0.002 0.998 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 -17.558 -19.380 26.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.242 4.242 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.344 4.344 8 H 0.068 0.932 9 N -0.323 5.323 10 C -0.007 4.007 11 C -0.024 4.024 12 N -0.368 5.368 13 C 0.295 3.705 14 O -0.449 6.449 15 C -0.190 4.190 16 C -0.010 4.010 17 N -0.356 5.356 18 C 0.293 3.707 19 O -0.456 6.456 20 C -0.166 4.166 21 C 0.030 3.970 22 H 0.064 0.936 23 C -0.175 4.175 24 C -0.187 4.187 25 C -0.039 4.039 26 O -0.321 6.321 27 C 0.020 3.980 28 C 0.075 3.925 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.150 0.850 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.029 0.971 49 H 0.020 0.980 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.090 -16.705 -18.489 24.942 hybrid contribution -0.280 1.288 0.742 1.513 sum -1.371 -15.417 -17.747 23.548 Atomic orbital electron populations 1.70231 1.06128 1.24614 1.56582 1.25624 0.95702 1.00372 1.02461 0.85481 0.78638 0.81536 0.76630 1.19861 1.22094 1.21975 1.18935 0.90358 0.84847 1.40306 0.93158 1.44660 1.31263 1.03050 1.53350 1.21672 0.96077 0.87485 0.95487 1.21978 0.97196 1.00672 0.82563 1.46019 1.54937 1.25953 1.09914 1.21263 0.79148 0.81462 0.88675 1.90722 1.40633 1.31489 1.82019 1.22238 1.02089 1.01636 0.92989 1.21995 0.87543 0.98640 0.92803 1.49157 1.18452 1.45886 1.22099 1.21359 0.80365 0.79859 0.89103 1.90745 1.43450 1.65420 1.45967 1.22014 0.99444 0.99314 0.95842 1.22796 0.95844 0.91383 0.86969 0.93612 1.23311 1.01163 0.96848 0.96212 1.23106 0.99826 1.01102 0.94692 1.23294 0.95503 0.88773 0.96359 1.88571 1.74284 1.29200 1.40078 1.21823 1.00127 0.91439 0.84625 1.20691 0.88565 0.94088 0.89128 0.94903 0.93553 0.93587 0.88453 0.92566 0.75811 0.84991 0.87315 0.91334 0.84761 0.84348 0.85665 0.87997 0.87924 0.87654 0.90789 0.90304 0.92822 0.90181 0.97061 0.98024 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.59 10.12 21.65 0.22 -58.37 16 2 C -0.05 -2.76 4.41 84.86 0.37 -2.39 16 3 Si 0.95 48.83 29.57 68.60 2.03 50.86 16 4 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 7 C -0.21 -12.37 8.25 84.03 0.69 -11.67 16 8 H 0.05 3.01 7.86 -2.91 -0.02 2.99 16 9 N -0.60 -31.37 2.22 -695.59 -1.54 -32.91 16 10 C 0.12 5.05 6.09 86.14 0.52 5.58 16 11 C 0.10 3.51 6.57 86.26 0.57 4.07 16 12 N -0.72 -21.80 4.69 -460.75 -2.16 -23.96 16 13 C 0.51 16.81 4.71 87.54 0.41 17.22 16 14 O -0.57 -25.18 14.80 -3.01 -0.04 -25.23 16 15 C -0.15 -3.07 6.19 29.85 0.18 -2.88 16 16 C 0.11 2.68 5.49 86.14 0.47 3.16 16 17 N -0.62 -21.82 2.44 -815.37 -1.99 -23.80 16 18 C 0.50 17.23 6.96 87.65 0.61 17.84 16 19 O -0.58 -26.86 13.97 8.37 0.12 -26.74 16 20 C -0.13 -2.48 4.11 29.85 0.12 -2.35 16 21 C 0.09 1.93 2.92 31.26 0.09 2.02 16 22 H 0.05 1.26 8.00 -2.39 -0.02 1.24 16 23 C -0.14 -1.57 6.57 32.05 0.21 -1.36 16 24 C -0.15 -1.82 7.02 31.85 0.22 -1.60 16 25 C 0.04 0.71 7.79 72.45 0.56 1.28 16 26 O -0.40 -11.35 10.41 -137.59 -1.43 -12.78 16 27 C 0.14 7.04 3.82 86.14 0.33 7.37 16 28 C 0.20 10.64 3.56 86.14 0.31 10.95 16 29 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.05 1.88 7.77 -2.39 -0.02 1.86 16 31 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 32 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.06 2.29 7.03 -2.39 -0.02 2.27 16 34 H 0.41 9.89 8.70 -92.71 -0.81 9.08 16 35 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.11 1.53 6.94 -2.39 -0.02 1.51 16 37 H 0.07 1.95 7.82 -2.39 -0.02 1.93 16 38 H 0.13 1.72 6.75 -2.39 -0.02 1.71 16 39 H 0.14 1.63 7.52 -2.39 -0.02 1.61 16 40 H 0.13 1.71 7.15 -2.39 -0.02 1.69 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.74 8.06 -2.39 -0.02 0.72 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.08 4.30 4.56 -2.39 -0.01 4.29 16 48 H 0.01 0.63 7.59 -2.39 -0.02 0.62 16 49 H 0.00 0.12 6.73 -2.39 -0.02 0.10 16 50 H 0.03 1.65 5.98 -2.39 -0.01 1.64 16 Total: -1.00 -89.84 375.91 1.03 -88.81 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.15 Total: 16.90 kcal Atomic # 6 Polarization: 41.53 SS G_CDS: 5.69 Total: 47.22 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -5.47 Total: -139.04 kcal Atomic # 8 Polarization: -63.39 SS G_CDS: -1.36 Total: -64.75 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.86 kcal Total: -89.84 1.03 -88.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070942239.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.687 kcal (2) G-P(sol) polarization free energy of solvation -89.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds