Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47260 * 300.00015 * 3 2 1 6 6 H 1.48504 * 109.47222 * 60.00028 * 3 2 1 7 7 C 1.38816 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99789 * 165.34177 * 7 2 1 9 9 N 1.36931 * 119.99656 * 345.33886 * 7 2 1 10 10 C 1.47776 * 121.64520 * 150.89666 * 9 7 2 11 11 C 1.52985 * 108.82367 * 83.02426 * 10 9 7 12 12 N 1.47108 * 109.17305 * 57.75151 * 11 10 9 13 13 C 1.35511 * 118.11358 * 259.43601 * 12 11 10 14 14 O 1.21282 * 120.23564 * 359.94505 * 13 12 11 15 15 C 1.50705 * 119.52632 * 179.97438 * 13 12 11 16 16 C 1.53597 * 109.49621 * 245.66063 * 15 13 12 17 17 N 1.47746 * 108.48022 * 55.01749 * 16 15 13 18 18 C 1.34775 * 121.65524 * 87.79977 * 17 16 15 19 19 O 1.21284 * 120.00314 * 179.71854 * 18 17 16 20 20 C 1.50702 * 119.99662 * 359.71897 * 18 17 16 21 21 C 1.53006 * 109.46979 * 179.97438 * 20 18 17 22 22 H 1.08995 * 110.53618 * 56.16686 * 21 20 18 23 23 C 1.54815 * 110.48552 * 178.77811 * 21 20 18 24 24 C 1.54995 * 102.08725 * 139.55789 * 23 21 20 25 25 O 1.44567 * 103.59030 * 323.05648 * 24 23 21 26 26 C 1.43749 * 106.87167 * 39.87901 * 25 24 23 27 27 C 1.47772 * 116.69094 * 267.53136 * 17 16 15 28 28 C 1.47738 * 121.65206 * 330.91585 * 9 7 2 29 29 H 0.97001 * 119.99852 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.57801 * 202.82734 * 10 9 7 31 31 H 1.09001 * 109.57607 * 323.22504 * 10 9 7 32 32 H 1.08994 * 109.52454 * 177.66037 * 11 10 9 33 33 H 1.09005 * 109.52024 * 297.84561 * 11 10 9 34 34 H 0.97005 * 120.94875 * 79.41860 * 12 11 10 35 35 H 1.08996 * 109.47291 * 5.70821 * 15 13 12 36 36 H 1.09000 * 109.47868 * 125.72744 * 15 13 12 37 37 H 1.09001 * 109.60603 * 295.40457 * 16 15 13 38 38 H 1.09001 * 109.87850 * 174.79339 * 16 15 13 39 39 H 1.08997 * 109.47168 * 60.00207 * 20 18 17 40 40 H 1.08997 * 109.47009 * 300.00031 * 20 18 17 41 41 H 1.08996 * 110.90800 * 257.75644 * 23 21 20 42 42 H 1.09001 * 110.90572 * 21.32880 * 23 21 20 43 43 H 1.08998 * 110.61854 * 81.48144 * 24 23 21 44 44 H 1.09003 * 110.61922 * 204.31350 * 24 23 21 45 45 H 1.08999 * 109.87708 * 214.17720 * 26 25 24 46 46 H 1.08991 * 109.87706 * 93.17115 * 26 25 24 47 47 H 1.08998 * 109.58544 * 250.10175 * 27 17 16 48 48 H 1.08992 * 109.59022 * 10.52835 * 27 17 16 49 49 H 1.08999 * 109.58199 * 194.85433 * 28 9 7 50 50 H 1.08995 * 109.58191 * 74.45461 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0638 -1.2175 -0.2361 9 7 1.3590 -2.3686 0.3012 10 6 1.7925 -3.6653 -0.2593 11 6 2.9382 -4.2135 0.5936 12 7 2.4834 -4.3455 1.9863 13 6 2.8430 -3.3827 2.8695 14 8 3.5218 -2.4449 2.5078 15 6 2.3940 -3.4858 4.3044 16 6 1.4307 -2.3331 4.6243 17 7 0.3248 -2.3615 3.6449 18 6 -0.7830 -3.1012 3.8503 19 8 -1.6750 -3.0984 3.0286 20 6 -0.9132 -3.9317 5.1010 21 6 -2.2547 -4.6674 5.0873 22 1 -2.3506 -5.2708 4.1846 23 6 -2.4000 -5.5529 6.3489 24 6 -3.8862 -5.3335 6.7300 25 8 -4.1136 -3.9394 6.4219 26 6 -3.4206 -3.6654 5.1928 27 6 0.4909 -1.5340 2.4320 28 6 0.1880 -2.3927 1.2016 29 1 -0.4850 0.8401 0.0004 30 1 0.9583 -4.3667 -0.2447 31 1 2.1355 -3.5238 -1.2842 32 1 3.2394 -5.1901 0.2147 33 1 3.7847 -3.5281 0.5503 34 1 1.9412 -5.1002 2.2646 35 1 1.8861 -4.4378 4.4586 36 1 3.2614 -3.4259 4.9618 37 1 1.9599 -1.3830 4.5502 38 1 1.0304 -2.4531 5.6310 39 1 -0.8644 -3.2823 5.9751 40 1 -0.1008 -4.6572 5.1416 41 1 -2.2093 -6.5999 6.1133 42 1 -1.7389 -5.2084 7.1441 43 1 -4.5350 -5.9686 6.1268 44 1 -4.0426 -5.5254 7.7916 45 1 -3.0336 -2.6464 5.2047 46 1 -4.0979 -3.7946 4.3487 47 1 -0.1989 -0.6908 2.4677 48 1 1.5160 -1.1680 2.3768 49 1 -0.0117 -3.4178 1.5138 50 1 -0.6815 -1.9914 0.6811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070949676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = -78.237010 kcal Electronic energy + Delta-G solvation = -32914.106462 eV Core-core repulsion = 28749.637159 eV Total energy + Delta-G solvation = -4164.469302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.23101 -39.34164 -38.44061 -35.89279 -35.40532 -33.83555 -33.42123 -31.33842 -30.45437 -30.14526 -29.13111 -27.36819 -26.08519 -24.40434 -23.66227 -22.86416 -22.10519 -20.55164 -20.17721 -19.79251 -18.43715 -17.14686 -16.87201 -16.52391 -16.14913 -16.03964 -15.76159 -15.16994 -14.88594 -14.83863 -14.53767 -14.39680 -13.69392 -13.41697 -13.31457 -13.28269 -13.07986 -12.95365 -12.70200 -12.52973 -12.31180 -12.00113 -11.73342 -11.67370 -11.48558 -11.34552 -11.25740 -11.10061 -10.95798 -10.79918 -10.76121 -10.46521 -10.26546 -9.95400 -9.83611 -9.69657 -9.67011 -9.16232 -9.13386 -8.71871 -8.29193 -8.08085 -6.48600 -5.57123 -3.10721 3.02735 3.22003 3.43095 3.45031 3.52860 3.57559 3.82924 3.89431 4.34270 4.53704 4.60450 4.74535 4.80752 4.94798 5.05429 5.08854 5.14376 5.28080 5.28598 5.45330 5.47045 5.54216 5.54712 5.56332 5.59346 5.68282 5.73229 5.74554 5.86500 6.01599 6.02970 6.09200 6.13468 6.21495 6.51241 6.59493 6.60908 6.77425 6.82422 6.92939 7.01398 7.13554 7.51032 7.78905 7.97508 8.07655 8.11506 8.49022 8.65968 8.90039 9.32341 9.92786 10.54633 11.41836 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.004126 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.138912 B = 6784.477082 C = 7563.775484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.001 3.999 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.063 0.937 9 N -0.587 5.587 10 C 0.127 3.873 11 C 0.089 3.911 12 N -0.722 5.722 13 C 0.520 3.480 14 O -0.516 6.516 15 C -0.159 4.159 16 C 0.117 3.883 17 N -0.616 5.616 18 C 0.507 3.493 19 O -0.529 6.529 20 C -0.133 4.133 21 C -0.103 4.103 22 H 0.091 0.909 23 C -0.152 4.152 24 C 0.046 3.954 25 O -0.385 6.385 26 C 0.060 3.940 27 C 0.113 3.887 28 C 0.175 3.825 29 H 0.250 0.750 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.390 0.610 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.102 0.898 49 H 0.026 0.974 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 -14.151 14.210 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.197 4.197 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.310 5.310 10 C -0.002 4.002 11 C -0.038 4.038 12 N -0.374 5.374 13 C 0.305 3.695 14 O -0.391 6.391 15 C -0.201 4.201 16 C -0.008 4.008 17 N -0.350 5.350 18 C 0.294 3.706 19 O -0.406 6.406 20 C -0.173 4.173 21 C -0.122 4.122 22 H 0.109 0.891 23 C -0.189 4.189 24 C -0.031 4.031 25 O -0.304 6.304 26 C -0.017 4.017 27 C -0.007 4.007 28 C 0.049 3.951 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.222 0.778 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.120 0.880 49 H 0.044 0.956 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.561 -13.127 13.576 18.893 hybrid contribution 0.414 0.442 0.113 0.616 sum -0.148 -12.685 13.689 18.664 Atomic orbital electron populations 1.70044 1.04970 1.24884 1.54423 1.25027 0.95127 0.97884 1.01688 0.86350 0.79693 0.84612 0.77060 1.20249 1.21999 1.21843 1.18913 0.91508 0.83996 1.41031 0.91955 1.44514 1.34111 1.01514 1.50857 1.21443 0.94505 0.88873 0.95335 1.22307 1.00467 0.99556 0.81469 1.46014 1.55225 1.25826 1.10312 1.20266 0.80029 0.82280 0.86942 1.90748 1.38049 1.30844 1.79425 1.22305 1.01247 1.00567 0.95942 1.21820 0.87763 0.98861 0.92314 1.49182 1.16842 1.46377 1.22640 1.20346 0.81881 0.80469 0.87861 1.90738 1.39159 1.64473 1.46231 1.21826 0.98501 0.99364 0.97597 1.22279 0.94356 0.96659 0.98946 0.89055 1.23222 0.97554 1.00443 0.97730 1.23528 0.94832 0.83754 1.00996 1.88909 1.73784 1.25944 1.41753 1.23181 0.92694 0.99389 0.86427 1.22661 1.03557 0.92680 0.81843 1.21165 0.91160 0.94193 0.88537 0.94001 0.94340 0.93046 0.92942 0.89641 0.77770 0.90809 0.88257 0.89196 0.90249 0.89092 0.89172 0.90160 0.90365 0.92328 0.89278 0.89856 0.91751 0.92520 0.87980 0.95554 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 10.35 55.49 0.57 -25.55 16 2 C 0.00 0.03 4.33 -17.43 -0.08 -0.05 16 3 Si 0.89 22.46 29.58 -169.99 -5.03 17.43 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.22 -6.09 8.37 -15.06 -0.13 -6.21 16 8 H 0.06 1.76 7.87 -52.49 -0.41 1.34 16 9 N -0.59 -14.20 2.27 -171.18 -0.39 -14.59 16 10 C 0.13 2.52 6.09 -3.35 -0.02 2.50 16 11 C 0.09 1.48 6.58 -3.72 -0.02 1.46 16 12 N -0.72 -10.93 4.70 -59.69 -0.28 -11.21 16 13 C 0.52 8.61 4.75 -10.65 -0.05 8.56 16 14 O -0.52 -11.04 15.08 5.56 0.08 -10.96 16 15 C -0.16 -1.86 6.20 -27.57 -0.17 -2.03 16 16 C 0.12 1.51 5.55 -3.05 -0.02 1.49 16 17 N -0.62 -10.33 2.42 -171.24 -0.41 -10.75 16 18 C 0.51 8.09 6.56 -10.99 -0.07 8.01 16 19 O -0.53 -10.58 13.45 5.55 0.07 -10.50 16 20 C -0.13 -1.43 3.62 -27.88 -0.10 -1.53 16 21 C -0.10 -1.12 2.66 -89.09 -0.24 -1.36 16 22 H 0.09 1.07 8.02 -51.93 -0.42 0.66 16 23 C -0.15 -1.22 6.71 -24.72 -0.17 -1.38 16 24 C 0.05 0.42 7.72 38.21 0.29 0.71 16 25 O -0.38 -5.03 11.54 -35.23 -0.41 -5.44 16 26 C 0.06 0.79 6.30 37.73 0.24 1.03 16 27 C 0.11 2.54 3.87 -3.31 -0.01 2.53 16 28 C 0.17 4.17 3.62 -3.33 -0.01 4.16 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.04 0.73 7.76 -51.93 -0.40 0.32 16 31 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.68 7.01 -51.93 -0.36 1.32 16 34 H 0.39 4.83 8.71 -40.82 -0.36 4.47 16 35 H 0.07 0.67 6.85 -51.93 -0.36 0.31 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.30 7.81 -51.93 -0.41 0.90 16 38 H 0.08 0.74 6.77 -51.93 -0.35 0.38 16 39 H 0.09 0.87 7.51 -51.93 -0.39 0.48 16 40 H 0.09 0.76 7.06 -51.93 -0.37 0.39 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 1.22 7.26 -51.93 -0.38 0.84 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 1.45 7.73 -51.93 -0.40 1.05 16 48 H 0.10 2.54 4.65 -51.93 -0.24 2.30 16 49 H 0.03 0.59 5.89 -51.93 -0.31 0.29 16 50 H 0.06 1.79 6.73 -51.93 -0.35 1.44 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -34.12 374.42 -8.69 -42.81 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.00 Total: 5.22 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: -0.55 Total: 17.88 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.51 Total: -62.09 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.25 Total: -26.90 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.12 -8.69 -42.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070949676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.426 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds