Wall clock time and date at job start Sat Apr 11 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00292 * 2 1 4 4 H 1.48500 * 109.46779 * 239.99910 * 3 2 1 5 5 H 1.48506 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47229 * 119.99455 * 3 2 1 7 7 C 1.38814 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99928 * 185.49575 * 7 2 1 9 9 N 1.36959 * 119.99730 * 5.50238 * 7 2 1 10 10 C 1.47752 * 121.51834 * 333.08006 * 9 7 2 11 11 C 1.52984 * 109.07521 * 100.15829 * 10 9 7 12 12 N 1.47604 * 108.89398 * 64.81917 * 11 10 9 13 13 C 1.36070 * 116.96980 * 238.35685 * 12 11 10 14 14 O 1.21243 * 120.82935 * 349.41863 * 13 12 11 15 15 C 1.50764 * 118.85270 * 169.58461 * 13 12 11 16 16 C 1.52866 * 109.58800 * 247.91254 * 15 13 12 17 17 N 1.47761 * 109.34605 * 68.42664 * 16 15 13 18 18 C 1.34852 * 121.47683 * 95.29428 * 17 16 15 19 19 O 1.21274 * 119.99881 * 4.54004 * 18 17 16 20 20 C 1.50703 * 119.99389 * 184.54388 * 18 17 16 21 21 H 1.08990 * 109.48533 * 48.58510 * 20 18 17 22 22 C 1.53094 * 109.47922 * 288.55687 * 20 18 17 23 23 C 1.53173 * 109.16213 * 182.41102 * 22 20 18 24 24 C 1.53180 * 109.03766 * 56.98467 * 23 22 20 25 25 C 1.53093 * 109.16054 * 303.01850 * 24 23 22 26 26 O 1.42902 * 109.41377 * 57.60842 * 25 24 23 27 27 C 1.47716 * 116.69393 * 274.68585 * 17 16 15 28 28 C 1.47810 * 121.78016 * 153.49732 * 9 7 2 29 29 H 0.97007 * 119.99950 * 0.02562 * 1 2 3 30 30 H 1.09024 * 109.55780 * 340.23118 * 10 9 7 31 31 H 1.09021 * 109.55603 * 220.08567 * 10 9 7 32 32 H 1.08874 * 109.62267 * 304.42679 * 11 10 9 33 33 H 1.09089 * 109.40275 * 184.40268 * 11 10 9 34 34 H 0.97113 * 121.44915 * 57.21906 * 12 11 10 35 35 H 1.09084 * 109.26883 * 128.05004 * 15 13 12 36 36 H 1.08936 * 109.49629 * 8.33840 * 15 13 12 37 37 H 1.09081 * 109.52802 * 188.36143 * 16 15 13 38 38 H 1.09044 * 109.62093 * 308.33406 * 16 15 13 39 39 H 1.09003 * 109.52609 * 302.32223 * 22 20 18 40 40 H 1.08999 * 109.51893 * 62.44663 * 22 20 18 41 41 H 1.09003 * 109.54194 * 176.85024 * 23 22 20 42 42 H 1.09000 * 109.54643 * 297.11650 * 23 22 20 43 43 H 1.09006 * 109.52173 * 62.92242 * 24 23 22 44 44 H 1.08992 * 109.52751 * 183.11437 * 24 23 22 45 45 H 1.09001 * 109.48003 * 177.58800 * 25 24 23 46 46 H 1.08991 * 109.48188 * 297.60903 * 25 24 23 47 47 H 1.09040 * 109.37243 * 1.77750 * 27 17 16 48 48 H 1.09166 * 109.29239 * 242.19004 * 27 17 16 49 49 H 1.09151 * 109.24447 * 65.66281 * 28 9 7 50 50 H 1.08963 * 109.31851 * 185.29923 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0864 -1.2043 0.0901 9 7 1.3300 -2.3856 -0.1127 10 6 -0.0712 -2.5171 0.3370 11 6 -0.9970 -2.4230 -0.8773 12 7 -0.7448 -3.5778 -1.7612 13 6 -0.3655 -3.3055 -3.0393 14 8 -0.4268 -2.1771 -3.4785 15 6 0.1309 -4.4340 -3.9070 16 6 1.6205 -4.2437 -4.1927 17 7 2.3873 -4.4398 -2.9449 18 6 2.9404 -5.6308 -2.6382 19 8 2.8848 -6.5472 -3.4306 20 6 3.6275 -5.8228 -1.3108 21 1 2.9839 -5.4552 -0.5117 22 6 4.9469 -5.0462 -1.3018 23 6 5.6675 -5.2948 0.0268 24 6 5.8786 -6.8013 0.2065 25 6 4.5233 -7.5101 0.1393 26 8 3.8929 -7.2123 -1.1082 27 6 2.5279 -3.2648 -2.0609 28 6 1.9615 -3.5951 -0.6810 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3062 -1.7161 1.0383 31 1 -0.2083 -3.4815 0.8268 32 1 -0.8042 -1.4949 -1.4129 33 1 -2.0354 -2.4409 -0.5436 34 1 -0.8295 -4.4902 -1.4395 35 1 -0.4213 -4.4346 -4.8478 36 1 -0.0274 -5.3827 -3.3955 37 1 1.9451 -4.9722 -4.9369 38 1 1.7946 -3.2367 -4.5732 39 1 5.5748 -5.3852 -2.1258 40 1 4.7434 -3.9812 -1.4131 41 1 6.6335 -4.7898 0.0176 42 1 5.0618 -4.9110 0.8476 43 1 6.5253 -7.1758 -0.5870 44 1 6.3413 -6.9914 1.1749 45 1 4.6715 -8.5867 0.2237 46 1 3.8915 -7.1649 0.9576 47 1 1.9875 -2.4213 -2.4916 48 1 3.5846 -3.0068 -1.9692 49 1 2.7680 -3.9231 -0.0226 50 1 1.2168 -4.3864 -0.7619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070954956.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:32 Heat of formation + Delta-G solvation = -90.860267 kcal Electronic energy + Delta-G solvation = -33343.445732 eV Core-core repulsion = 29178.429044 eV Total energy + Delta-G solvation = -4165.016688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75107 -40.51606 -39.36640 -38.00220 -36.82098 -35.05931 -34.61947 -33.81627 -32.68223 -31.58937 -30.65840 -28.42881 -27.21096 -25.75761 -25.02372 -24.79123 -23.47066 -22.22275 -21.31094 -21.09640 -20.32657 -18.79760 -18.30934 -17.89089 -17.71432 -16.98945 -16.79207 -16.61962 -16.52234 -16.10328 -15.82747 -15.56715 -15.44142 -15.09281 -14.97671 -14.87748 -14.39342 -14.24273 -13.99538 -13.71820 -13.59931 -13.45040 -13.42324 -13.00994 -12.86750 -12.73856 -12.61424 -12.44226 -12.40187 -12.14042 -12.05978 -11.93972 -11.92498 -11.75788 -11.60423 -11.24924 -10.81929 -10.65608 -10.50783 -10.43583 -9.83411 -9.72169 -8.49699 -7.77439 -5.23193 1.44733 1.50047 1.53995 1.56968 1.62847 1.80966 2.53268 2.59224 2.87693 3.34352 3.41761 3.74021 3.78754 3.84117 3.86220 3.98885 4.05839 4.06972 4.11480 4.18242 4.24305 4.34238 4.46098 4.52258 4.61917 4.63841 4.67214 4.76490 4.78855 4.82197 4.87453 4.88549 4.97409 5.01871 5.07825 5.13292 5.17493 5.18968 5.36251 5.43860 5.51253 5.69195 5.77549 6.06795 6.10840 6.34257 6.45734 6.82561 7.06350 7.23867 7.49921 7.88026 8.42732 9.24994 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.005238 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.867956 B = 5344.537661 C = 6781.172115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.036 4.036 3 Si 0.952 3.048 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.601 5.601 10 C 0.161 3.839 11 C 0.107 3.893 12 N -0.719 5.719 13 C 0.515 3.485 14 O -0.585 6.585 15 C -0.146 4.146 16 C 0.125 3.875 17 N -0.606 5.606 18 C 0.530 3.470 19 O -0.561 6.561 20 C 0.069 3.931 21 H 0.101 0.899 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.152 4.152 25 C 0.051 3.949 26 O -0.384 6.384 27 C 0.101 3.899 28 C 0.134 3.866 29 H 0.245 0.755 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.406 0.594 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.112 0.888 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.042 0.958 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.383 -13.493 0.628 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.232 4.232 3 Si 0.782 3.218 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.325 5.325 10 C 0.035 3.965 11 C -0.018 4.018 12 N -0.372 5.372 13 C 0.303 3.697 14 O -0.465 6.465 15 C -0.187 4.187 16 C 0.002 3.998 17 N -0.341 5.341 18 C 0.319 3.681 19 O -0.440 6.440 20 C 0.009 3.991 21 H 0.118 0.882 22 C -0.186 4.186 23 C -0.156 4.156 24 C -0.189 4.189 25 C -0.025 4.025 26 O -0.303 6.303 27 C -0.023 4.023 28 C 0.008 3.992 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.243 0.757 35 H 0.141 0.859 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.130 0.870 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.060 0.940 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.193 -13.196 -0.163 14.578 hybrid contribution 0.117 1.263 0.188 1.283 sum 6.310 -11.933 0.026 13.499 Atomic orbital electron populations 1.70034 1.05794 1.24912 1.55521 1.25598 0.96219 1.00129 1.01221 0.85588 0.77651 0.80815 0.77749 1.21466 1.22848 1.20339 1.19191 0.91326 0.83783 1.43434 0.91131 1.44601 1.10522 1.07264 1.70138 1.21262 0.83406 0.97495 0.94371 1.22414 0.96978 0.89417 0.92964 1.46665 1.69446 1.09929 1.11199 1.21219 0.75848 0.89715 0.82913 1.90680 1.55940 1.26018 1.73817 1.22115 0.97529 0.97292 1.01776 1.21624 0.88533 1.03194 0.86416 1.48681 1.52614 1.10150 1.22615 1.20411 0.77787 0.81452 0.88484 1.90648 1.60094 1.41718 1.51522 1.22221 0.97480 0.84367 0.95047 0.88150 1.22199 0.95205 1.00924 1.00256 1.21594 1.01374 0.96893 0.95764 1.22189 0.97779 0.95150 1.03825 1.22910 0.93119 1.01616 0.84838 1.87971 1.80513 1.22013 1.39786 1.22627 1.01375 0.86515 0.91761 1.21802 0.96336 0.89726 0.91327 0.94537 0.90614 0.95362 0.89678 0.93967 0.75712 0.85893 0.88668 0.87873 0.90219 0.91477 0.89877 0.89856 0.91105 0.91413 0.88436 0.86991 0.92113 0.91216 0.90914 0.94015 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.77 8.40 21.65 0.18 -48.59 16 2 C -0.04 -1.82 5.39 84.86 0.46 -1.36 16 3 Si 0.95 42.90 29.56 68.60 2.03 44.93 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.25 -11.94 9.11 84.03 0.77 -11.17 16 8 H 0.07 3.31 7.83 -2.92 -0.02 3.28 16 9 N -0.60 -25.50 2.72 -695.66 -1.90 -27.39 16 10 C 0.16 6.66 5.18 86.13 0.45 7.11 16 11 C 0.11 4.40 6.12 86.16 0.53 4.92 16 12 N -0.72 -23.88 3.71 -458.89 -1.70 -25.58 16 13 C 0.52 18.35 5.12 87.47 0.45 18.80 16 14 O -0.58 -26.94 16.13 -2.91 -0.05 -26.98 16 15 C -0.15 -3.89 6.08 29.82 0.18 -3.71 16 16 C 0.12 3.52 5.67 86.09 0.49 4.01 16 17 N -0.61 -18.13 2.61 -815.59 -2.13 -20.26 16 18 C 0.53 16.57 6.89 87.65 0.60 17.17 16 19 O -0.56 -20.80 16.18 15.77 0.26 -20.54 16 20 C 0.07 1.87 2.15 29.88 0.06 1.94 16 21 H 0.10 2.63 4.55 -2.39 -0.01 2.62 16 22 C -0.15 -3.50 4.99 30.68 0.15 -3.35 16 23 C -0.12 -2.22 6.03 30.71 0.19 -2.04 16 24 C -0.15 -2.47 6.14 30.69 0.19 -2.29 16 25 C 0.05 0.97 6.84 72.01 0.49 1.46 16 26 O -0.38 -10.67 9.96 -130.20 -1.30 -11.97 16 27 C 0.10 3.38 4.11 86.07 0.35 3.73 16 28 C 0.13 4.52 3.62 86.05 0.31 4.83 16 29 H 0.24 13.19 8.31 -92.70 -0.77 12.42 16 30 H 0.08 3.66 6.13 -2.37 -0.01 3.65 16 31 H 0.03 1.02 8.05 -2.38 -0.02 1.00 16 32 H 0.08 4.39 5.19 -2.45 -0.01 4.38 16 33 H 0.04 1.63 8.15 -2.34 -0.02 1.61 16 34 H 0.41 10.81 8.32 -92.62 -0.77 10.04 16 35 H 0.12 2.77 8.15 -2.34 -0.02 2.75 16 36 H 0.09 2.26 7.93 -2.42 -0.02 2.24 16 37 H 0.10 2.71 7.37 -2.34 -0.02 2.69 16 38 H 0.08 2.39 7.84 -2.36 -0.02 2.37 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 2.05 5.14 -2.39 -0.01 2.04 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 47 H 0.07 2.92 6.31 -2.37 -0.01 2.91 16 48 H 0.07 2.32 5.62 -2.30 -0.01 2.30 16 49 H 0.04 1.32 6.12 -2.31 -0.01 1.30 16 50 H 0.06 2.01 5.95 -2.41 -0.01 2.00 16 Total: -1.00 -65.69 368.00 1.26 -64.43 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.20 Total: 31.90 kcal Atomic # 6 Polarization: 34.39 SS G_CDS: 5.67 Total: 40.06 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.54 Total: -121.82 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -1.09 Total: -59.49 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -65.69 1.26 -64.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070954956.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.430 kcal (2) G-P(sol) polarization free energy of solvation -65.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds