Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47439 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47030 * 299.99818 * 3 2 1 6 6 H 1.48497 * 109.47591 * 59.99662 * 3 2 1 7 7 C 1.38812 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99948 * 160.62276 * 7 2 1 9 9 N 1.36947 * 119.99971 * 340.62768 * 7 2 1 10 10 C 1.43419 * 120.63168 * 155.69387 * 9 7 2 11 11 C 1.55290 * 116.26161 * 269.29175 * 10 9 7 12 12 C 1.55193 * 108.89188 * 319.52155 * 11 10 9 13 13 O 1.39639 * 110.53217 * 322.09516 * 12 11 10 14 14 C 1.42372 * 108.62819 * 101.19128 * 13 12 11 15 15 H 1.09003 * 108.61406 * 28.55196 * 14 13 12 16 16 C 1.52999 * 108.61930 * 146.31891 * 14 13 12 17 17 N 1.46500 * 109.47495 * 299.99918 * 16 14 13 18 18 C 1.34772 * 120.00127 * 179.97438 * 17 16 14 19 19 O 1.21286 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00052 * 180.02562 * 18 17 16 21 21 H 1.09007 * 108.56315 * 62.07245 * 20 18 17 22 22 C 1.51779 * 108.61772 * 180.02562 * 20 18 17 23 23 C 1.52993 * 110.88277 * 188.12741 * 22 20 18 24 24 N 1.47189 * 108.66156 * 273.52984 * 23 22 20 25 25 C 1.33372 * 120.42732 * 71.96115 * 24 23 22 26 26 O 1.21285 * 119.89170 * 179.71784 * 25 24 23 27 27 C 1.51424 * 120.21872 * 359.68949 * 25 24 23 28 28 C 1.51787 * 108.61886 * 304.27012 * 20 18 17 29 29 C 1.46922 * 113.79754 * 267.43901 * 14 13 12 30 30 H 0.97009 * 119.99817 * 0.02562 * 1 2 3 31 31 H 1.08998 * 108.13153 * 31.09103 * 10 9 7 32 32 H 1.09005 * 108.12513 * 147.77969 * 10 9 7 33 33 H 1.08995 * 109.59304 * 199.68386 * 11 10 9 34 34 H 1.08996 * 109.53549 * 79.32656 * 11 10 9 35 35 H 1.08995 * 109.26261 * 201.82655 * 12 11 10 36 36 H 1.09006 * 109.25323 * 82.35330 * 12 11 10 37 37 H 1.09001 * 109.47135 * 60.00579 * 16 14 13 38 38 H 1.09001 * 109.46923 * 179.97438 * 16 14 13 39 39 H 0.97002 * 119.99678 * 0.02562 * 17 16 14 40 40 H 1.09002 * 109.19467 * 308.48350 * 22 20 18 41 41 H 1.08996 * 109.19779 * 67.76504 * 22 20 18 42 42 H 1.09001 * 109.60316 * 33.28686 * 23 22 20 43 43 H 1.08997 * 109.60259 * 153.78041 * 23 22 20 44 44 H 0.97003 * 119.79071 * 251.97980 * 24 23 22 45 45 H 1.09001 * 109.63154 * 48.49551 * 27 25 24 46 46 H 1.09001 * 109.63523 * 168.88775 * 27 25 24 47 47 H 1.08999 * 109.22362 * 292.39640 * 28 20 18 48 48 H 1.08997 * 109.22754 * 51.74719 * 28 20 18 49 49 H 1.08993 * 109.99132 * 176.12207 * 29 14 13 50 50 H 1.08995 * 109.99141 * 297.49323 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0443 -1.2288 -0.3098 9 7 1.3835 -2.3544 0.3945 10 6 1.8497 -3.6320 -0.0608 11 6 1.2136 -4.1682 -1.3721 12 6 -0.3058 -3.8523 -1.3593 13 8 -0.8278 -4.0090 -0.0737 14 6 -0.9688 -2.7227 0.5199 15 1 -1.1333 -1.9907 -0.2709 16 6 -2.1985 -2.7368 1.4301 17 7 -3.3892 -3.0533 0.6376 18 6 -4.5964 -3.1216 1.2329 19 8 -4.6970 -2.9207 2.4247 20 6 -5.8212 -3.4477 0.4177 21 1 -5.7000 -4.4442 -0.0072 22 6 -7.0278 -3.4565 1.3384 23 6 -8.2673 -3.9768 0.6079 24 7 -8.9138 -2.8501 -0.0841 25 6 -8.3524 -2.3107 -1.1671 26 8 -8.8961 -1.3859 -1.7328 27 6 -7.0380 -2.8488 -1.6923 28 6 -5.9262 -2.4485 -0.7200 29 6 0.1961 -2.3042 1.3114 30 1 -0.4850 0.8401 -0.0004 31 1 2.9276 -3.5670 -0.2083 32 1 1.6611 -4.3620 0.7265 33 1 1.3618 -5.2461 -1.4361 34 1 1.6803 -3.6821 -2.2288 35 1 -0.8196 -4.5298 -2.0412 36 1 -0.4620 -2.8247 -1.6880 37 1 -2.0674 -3.4910 2.2061 38 1 -2.3193 -1.7573 1.8928 39 1 -3.3087 -3.2143 -0.3156 40 1 -6.8206 -4.0984 2.1946 41 1 -7.2181 -2.4423 1.6895 42 1 -7.9724 -4.7326 -0.1200 43 1 -8.9612 -4.4102 1.3282 44 1 -9.7535 -2.4972 0.2497 45 1 -7.0892 -3.9353 -1.7629 46 1 -6.8369 -2.4270 -2.6770 47 1 -6.1443 -1.4616 -0.3119 48 1 -4.9774 -2.4129 -1.2553 49 1 0.0515 -1.2882 1.6787 50 1 0.3425 -2.9868 2.1484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073713563.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -119.891687 kcal Electronic energy + Delta-G solvation = -31185.691417 eV Core-core repulsion = 27019.415833 eV Total energy + Delta-G solvation = -4166.275585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63431 -40.81270 -40.15820 -37.48862 -36.78792 -35.97014 -34.96743 -33.79115 -32.87809 -32.07693 -30.34481 -28.43496 -27.05641 -26.68253 -25.10011 -24.32513 -22.59440 -22.39239 -21.30463 -20.86128 -20.63132 -18.98196 -18.55976 -18.16194 -17.67889 -17.44796 -17.01855 -16.63469 -16.33766 -16.20717 -15.81923 -15.53236 -15.47889 -15.08164 -14.92981 -14.65503 -14.51380 -14.41550 -14.16237 -13.78214 -13.62064 -13.43562 -13.28922 -13.15234 -12.93992 -12.84335 -12.64637 -12.50078 -12.45690 -12.26824 -11.92973 -11.90043 -11.75280 -11.67375 -11.36667 -11.16945 -10.89472 -10.75767 -10.56092 -10.25557 -10.11115 -10.01998 -8.71567 -7.90458 -5.30375 1.45482 1.51178 1.58092 1.60725 1.70399 2.25176 2.42218 2.51678 3.13106 3.27437 3.48256 3.51195 3.59544 3.75247 3.81787 4.15421 4.21369 4.28192 4.31789 4.39291 4.43028 4.44182 4.49066 4.52858 4.59454 4.69792 4.74317 4.77287 4.79762 4.81909 4.96251 5.03630 5.06604 5.09866 5.15229 5.20148 5.21047 5.33139 5.36221 5.42050 5.46767 5.53882 5.68573 5.90836 6.30030 6.35990 6.53634 6.61984 7.10705 7.25981 7.29309 7.83329 8.35691 9.15300 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.002853 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.383625 B = 9812.646862 C =10478.719626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.035 4.035 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.261 4.261 8 H 0.063 0.937 9 N -0.602 5.602 10 C 0.153 3.847 11 C -0.165 4.165 12 C 0.068 3.932 13 O -0.365 6.365 14 C 0.081 3.919 15 H 0.084 0.916 16 C 0.133 3.867 17 N -0.707 5.707 18 C 0.506 3.494 19 O -0.589 6.589 20 C -0.095 4.095 21 H 0.138 0.862 22 C -0.122 4.122 23 C 0.113 3.887 24 N -0.716 5.716 25 C 0.509 3.491 26 O -0.611 6.611 27 C -0.127 4.127 28 C -0.103 4.103 29 C 0.144 3.856 30 H 0.250 0.750 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.410 0.590 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.403 0.597 45 H 0.131 0.869 46 H 0.101 0.899 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.337 -13.558 -2.310 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.232 4.232 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.391 4.391 8 H 0.080 0.920 9 N -0.324 5.324 10 C 0.025 3.975 11 C -0.206 4.206 12 C -0.010 4.010 13 O -0.283 6.283 14 C 0.022 3.978 15 H 0.102 0.898 16 C 0.007 3.993 17 N -0.358 5.358 18 C 0.294 3.706 19 O -0.469 6.469 20 C -0.116 4.116 21 H 0.156 0.844 22 C -0.161 4.161 23 C -0.010 4.010 24 N -0.366 5.366 25 C 0.297 3.703 26 O -0.493 6.493 27 C -0.167 4.167 28 C -0.141 4.141 29 C 0.019 3.981 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.247 0.753 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.125 0.875 43 H 0.138 0.862 44 H 0.239 0.761 45 H 0.149 0.851 46 H 0.120 0.880 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.569 -13.086 -1.703 19.657 hybrid contribution 0.640 1.841 -0.129 1.953 sum -13.929 -11.245 -1.832 17.996 Atomic orbital electron populations 1.69992 1.05778 1.25518 1.54876 1.25432 0.96026 1.00392 1.01321 0.85392 0.78611 0.80867 0.76580 1.19960 1.22105 1.22107 1.19417 0.93672 0.86366 1.39617 0.91974 1.44237 1.34698 1.01908 1.51518 1.20488 0.95970 0.86662 0.94336 1.23492 0.96821 1.00636 0.99676 1.22410 0.93738 1.00216 0.84616 1.87508 1.83367 1.28032 1.29404 1.21706 0.93483 0.84759 0.97855 0.89820 1.21316 0.84110 0.99747 0.94086 1.45880 1.06437 1.70547 1.12919 1.21386 0.85373 0.75736 0.88083 1.90671 1.86860 1.51756 1.17662 1.21092 0.91733 1.03176 0.95624 0.84429 1.21647 0.93413 1.02664 0.98373 1.22028 0.94057 0.87559 0.97362 1.46066 1.26321 1.35797 1.28421 1.21138 0.87338 0.81706 0.80082 1.90737 1.66279 1.31790 1.60525 1.21961 0.89659 1.05036 1.00062 1.21176 0.99853 0.98027 0.95049 1.20668 0.86389 0.99967 0.91050 0.94089 0.95213 0.94678 0.90241 0.92887 0.89179 0.94588 0.92359 0.92630 0.75333 0.89418 0.93143 0.87492 0.86246 0.76111 0.85127 0.88039 0.93558 0.89047 0.90602 0.95835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.97 9.57 21.65 0.21 -47.76 16 2 C -0.04 -1.83 4.92 84.86 0.42 -1.41 16 3 Si 0.96 43.06 29.60 68.60 2.03 45.09 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.26 -13.50 9.62 84.03 0.81 -12.69 16 8 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 9 N -0.60 -28.37 2.61 -706.09 -1.85 -30.21 16 10 C 0.15 6.16 5.33 87.74 0.47 6.63 16 11 C -0.17 -5.57 6.75 32.13 0.22 -5.35 16 12 C 0.07 2.25 6.38 72.73 0.46 2.71 16 13 O -0.36 -12.83 9.53 -137.18 -1.31 -14.13 16 14 C 0.08 3.14 1.95 28.71 0.06 3.20 16 15 H 0.08 3.72 5.25 -2.39 -0.01 3.70 16 16 C 0.13 4.70 5.24 86.38 0.45 5.15 16 17 N -0.71 -19.84 5.23 -463.07 -2.42 -22.27 16 18 C 0.51 13.67 7.14 87.66 0.63 14.30 16 19 O -0.59 -20.96 15.74 -3.05 -0.05 -21.01 16 20 C -0.10 -1.53 2.05 -12.34 -0.03 -1.56 16 21 H 0.14 1.22 7.87 -2.38 -0.02 1.20 16 22 C -0.12 -1.80 4.39 30.19 0.13 -1.67 16 23 C 0.11 0.83 6.47 86.25 0.56 1.39 16 24 N -0.72 -9.70 5.27 -462.60 -2.44 -12.14 16 25 C 0.51 10.31 7.06 88.11 0.62 10.93 16 26 O -0.61 -18.94 17.92 -3.04 -0.05 -18.99 16 27 C -0.13 -1.75 5.57 30.09 0.17 -1.58 16 28 C -0.10 -1.73 4.86 30.20 0.15 -1.58 16 29 C 0.14 6.46 4.71 83.79 0.39 6.85 16 30 H 0.25 12.98 8.31 -92.70 -0.77 12.21 16 31 H 0.03 1.19 7.96 -2.39 -0.02 1.17 16 32 H 0.03 1.36 7.98 -2.38 -0.02 1.34 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.41 6.66 -2.38 -0.02 1.39 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.41 9.75 7.32 -92.71 -0.68 9.07 16 40 H 0.09 1.38 7.74 -2.39 -0.02 1.36 16 41 H 0.05 1.04 8.05 -2.39 -0.02 1.02 16 42 H 0.11 0.28 6.71 -2.39 -0.02 0.27 16 43 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.40 5.04 8.91 -92.71 -0.83 4.22 16 45 H 0.13 0.79 6.77 -2.39 -0.02 0.77 16 46 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 47 H 0.05 1.05 7.86 -2.39 -0.02 1.04 16 48 H 0.09 1.45 6.97 -2.39 -0.02 1.43 16 49 H 0.08 3.83 6.03 -2.39 -0.01 3.82 16 50 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -71.34 382.60 -0.91 -72.25 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.54 Total: 23.85 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: 5.50 Total: 25.32 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -6.50 Total: -112.38 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.41 Total: -54.14 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.34 -0.91 -72.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073713563.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.642 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds