Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48497 * 109.47053 * 275.54966 * 3 2 1 5 5 H 1.48492 * 109.47425 * 35.55345 * 3 2 1 6 6 H 1.48507 * 109.46801 * 155.55460 * 3 2 1 7 7 C 1.38820 * 119.99386 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00494 * 336.56620 * 7 2 1 9 9 N 1.36935 * 119.99484 * 156.56878 * 7 2 1 10 10 C 1.43423 * 120.63849 * 320.51447 * 9 7 2 11 11 C 1.55330 * 116.24422 * 269.33589 * 10 9 7 12 12 C 1.55191 * 108.86998 * 319.46371 * 11 10 9 13 13 O 1.39804 * 110.45935 * 322.13773 * 12 11 10 14 14 C 1.42377 * 108.53994 * 101.32138 * 13 12 11 15 15 H 1.08997 * 108.62347 * 28.31515 * 14 13 12 16 16 C 1.52994 * 108.62133 * 146.23354 * 14 13 12 17 17 N 1.46507 * 109.47048 * 302.05665 * 16 14 13 18 18 C 1.34773 * 119.99908 * 180.02562 * 17 16 14 19 19 O 1.21277 * 120.00248 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00037 * 179.97438 * 18 17 16 21 21 H 1.09004 * 108.44220 * 62.12527 * 20 18 17 22 22 C 1.51673 * 108.53952 * 304.24958 * 20 18 17 23 23 C 1.52994 * 110.84557 * 171.84405 * 22 20 18 24 24 N 1.47194 * 108.66544 * 86.48070 * 23 22 20 25 25 C 1.33366 * 120.42816 * 288.05089 * 24 23 22 26 26 O 1.21285 * 119.88965 * 180.26267 * 25 24 23 27 27 C 1.51419 * 120.21866 * 0.27635 * 25 24 23 28 28 C 1.51782 * 108.61806 * 179.97438 * 20 18 17 29 29 C 1.46931 * 113.68419 * 267.27582 * 14 13 12 30 30 H 0.97001 * 119.99650 * 0.02562 * 1 2 3 31 31 H 1.09004 * 108.12610 * 31.09164 * 10 9 7 32 32 H 1.09002 * 108.12822 * 147.57254 * 10 9 7 33 33 H 1.08998 * 109.57041 * 79.27565 * 11 10 9 34 34 H 1.08991 * 109.57631 * 199.52351 * 11 10 9 35 35 H 1.09001 * 109.25895 * 82.42408 * 12 11 10 36 36 H 1.09000 * 109.25754 * 201.90053 * 12 11 10 37 37 H 1.08998 * 109.47185 * 182.05676 * 16 14 13 38 38 H 1.09003 * 109.47488 * 62.05465 * 16 14 13 39 39 H 0.96994 * 119.99890 * 359.97438 * 17 16 14 40 40 H 1.08999 * 109.19784 * 51.50656 * 22 20 18 41 41 H 1.08999 * 109.19264 * 292.17926 * 22 20 18 42 42 H 1.08997 * 109.60589 * 326.72519 * 23 22 20 43 43 H 1.08999 * 109.73695 * 206.31203 * 23 22 20 44 44 H 0.96999 * 119.78170 * 108.03041 * 24 23 22 45 45 H 1.09006 * 109.63554 * 311.52440 * 27 25 24 46 46 H 1.08997 * 109.64151 * 190.92011 * 27 25 24 47 47 H 1.09003 * 109.22391 * 67.60814 * 28 20 18 48 48 H 1.08998 * 109.22628 * 308.21830 * 28 20 18 49 49 H 1.08993 * 109.99097 * 176.19330 * 29 14 13 50 50 H 1.08995 * 109.98787 * 297.46957 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3805 2.1140 -1.3935 5 1 1.5115 2.6159 0.8140 6 1 3.6016 1.4089 0.5794 7 6 2.0102 -1.2023 0.0005 8 1 1.5370 -2.0988 0.3729 9 7 3.2949 -1.2514 -0.4710 10 6 3.6763 -0.5013 -1.6324 11 6 3.5354 -1.2294 -2.9972 12 6 4.0019 -2.7002 -2.8320 13 8 5.1042 -2.7699 -1.9748 14 6 4.6548 -3.1974 -0.6932 15 1 3.7644 -3.8124 -0.8239 16 6 5.7487 -4.0537 -0.0525 17 7 6.0517 -5.1915 -0.9243 18 6 6.9906 -6.0876 -0.5611 19 8 7.5850 -5.9519 0.4873 20 6 7.3018 -7.2582 -1.4576 21 1 7.6803 -6.8756 -2.4055 22 6 6.0167 -8.0197 -1.7201 23 6 6.2307 -9.0989 -2.7833 24 7 6.7166 -10.3212 -2.1226 25 6 7.9580 -10.3796 -1.6387 26 8 8.3498 -11.3934 -1.1004 27 6 8.8798 -9.1843 -1.7588 28 6 8.3879 -8.0935 -0.8044 29 6 4.3310 -2.0911 0.2180 30 1 -0.4850 0.8401 -0.0004 31 1 3.0691 0.4033 -1.6664 32 1 4.7172 -0.1999 -1.5147 33 1 2.4930 -1.2105 -3.3152 34 1 4.1537 -0.7300 -3.7431 35 1 3.1855 -3.2920 -2.4182 36 1 4.2784 -3.1014 -3.8070 37 1 5.4043 -4.4190 0.9150 38 1 6.6473 -3.4522 0.0852 39 1 5.5761 -5.3003 -1.7626 40 1 5.2517 -7.3239 -2.0648 41 1 5.6831 -8.4894 -0.7948 42 1 6.9692 -8.7567 -3.5082 43 1 5.2890 -9.3073 -3.2911 44 1 6.1300 -11.0891 -2.0385 45 1 8.8626 -8.8099 -2.7824 46 1 9.8949 -9.4759 -1.4894 47 1 7.9893 -8.5590 0.0970 48 1 9.2240 -7.4481 -0.5353 49 1 3.9313 -2.4833 1.1530 50 1 5.2235 -1.4971 0.4146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073713565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = -93.095783 kcal Electronic energy + Delta-G solvation = -30671.781934 eV Core-core repulsion = 26506.668307 eV Total energy + Delta-G solvation = -4165.113627 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93289 -39.88690 -39.17842 -36.81481 -35.41869 -34.94545 -34.17809 -32.51085 -31.81749 -31.44243 -29.07851 -27.66094 -25.97896 -25.45012 -24.38702 -22.80101 -21.85553 -21.28822 -20.37386 -20.11154 -19.84171 -17.98894 -17.55854 -17.13541 -16.78497 -16.29205 -15.98320 -15.72013 -15.47010 -15.04540 -14.77410 -14.57753 -14.35807 -14.12396 -14.07180 -13.85750 -13.61965 -13.21883 -13.11028 -12.77116 -12.72175 -12.51185 -12.42662 -12.14170 -11.96997 -11.85903 -11.70248 -11.36627 -11.28597 -11.16546 -10.84399 -10.59348 -10.46588 -10.27882 -10.11200 -9.98911 -9.80630 -9.69025 -9.50887 -9.12793 -9.07531 -8.57293 -6.90908 -6.12295 -3.57021 2.31188 2.51797 2.90129 3.05138 3.26333 3.41268 3.48046 4.05993 4.14334 4.19787 4.23446 4.29915 4.43714 4.68727 4.70340 4.79906 4.86446 4.95033 5.01005 5.04443 5.12450 5.27024 5.27532 5.32477 5.40865 5.51788 5.57575 5.64588 5.70501 5.72725 5.76871 5.87024 5.91242 5.96044 6.07629 6.18138 6.38778 6.40134 6.41381 6.49621 6.54200 6.72432 6.79024 6.85162 7.41271 7.53378 7.88058 7.96189 8.12252 8.22391 8.87687 9.58676 10.03077 11.02535 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.002269 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.424741 B =12337.018585 C =12530.186800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.276 4.276 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.151 3.849 11 C -0.168 4.168 12 C 0.065 3.935 13 O -0.356 6.356 14 C 0.063 3.937 15 H 0.069 0.931 16 C 0.115 3.885 17 N -0.718 5.718 18 C 0.512 3.488 19 O -0.541 6.541 20 C -0.107 4.107 21 H 0.100 0.900 22 C -0.138 4.138 23 C 0.110 3.890 24 N -0.726 5.726 25 C 0.518 3.482 26 O -0.553 6.553 27 C -0.139 4.139 28 C -0.095 4.095 29 C 0.112 3.888 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.401 0.599 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.401 0.599 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.566 -15.434 -9.488 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.159 4.159 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.404 4.404 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.024 3.976 11 C -0.209 4.209 12 C -0.012 4.012 13 O -0.274 6.274 14 C 0.004 3.996 15 H 0.087 0.913 16 C -0.009 4.009 17 N -0.369 5.369 18 C 0.298 3.702 19 O -0.418 6.418 20 C -0.128 4.128 21 H 0.118 0.882 22 C -0.176 4.176 23 C -0.014 4.014 24 N -0.378 5.378 25 C 0.305 3.695 26 O -0.431 6.431 27 C -0.179 4.179 28 C -0.133 4.133 29 C -0.013 4.013 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.237 0.763 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.107 0.893 49 H 0.099 0.901 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.347 -15.510 -8.457 22.141 hybrid contribution -0.557 0.903 -0.497 1.171 sum 12.790 -14.607 -8.955 21.381 Atomic orbital electron populations 1.69882 1.06092 1.26993 1.50419 1.25528 0.95037 0.97986 0.97368 0.86883 0.80750 0.84420 0.77074 1.21318 1.22809 1.19356 1.18686 0.86503 0.94367 1.40845 0.90638 1.44097 1.07358 1.55311 1.25311 1.20620 0.97397 0.93691 0.85905 1.23490 1.00767 0.96613 1.00066 1.22458 0.88562 0.97202 0.93003 1.87638 1.30959 1.88549 1.20257 1.21988 0.95120 0.96189 0.86351 0.91314 1.21724 0.99268 0.86490 0.93463 1.45932 1.40279 1.26103 1.24607 1.20562 0.79388 0.83434 0.86865 1.90716 1.50573 1.75916 1.24632 1.21020 0.97120 0.94650 1.00053 0.88199 1.21868 0.96503 0.98376 1.00897 1.21779 1.00992 0.84274 0.94389 1.45983 1.14547 1.17513 1.59766 1.20650 0.82634 0.89262 0.76986 1.90765 1.75412 1.33120 1.43778 1.22021 0.99769 0.94083 1.01995 1.21040 0.98441 0.95935 0.97913 1.21043 0.93003 0.92293 0.94969 0.92548 0.93934 0.94964 0.91560 0.92623 0.92341 0.92117 0.90306 0.90826 0.76441 0.89694 0.90189 0.90109 0.88799 0.76325 0.89082 0.88038 0.90764 0.89267 0.90076 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.97 55.49 0.78 -25.37 16 2 C 0.04 1.18 5.27 -17.43 -0.09 1.08 16 3 Si 0.88 21.69 25.24 -169.99 -4.29 17.40 16 4 H -0.29 -6.89 6.74 56.52 0.38 -6.51 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.28 -7.23 9.93 -15.06 -0.15 -7.38 16 8 H 0.08 2.12 8.06 -52.49 -0.42 1.70 16 9 N -0.60 -13.27 2.16 -174.50 -0.38 -13.64 16 10 C 0.15 3.18 4.29 -4.43 -0.02 3.16 16 11 C -0.17 -2.93 6.75 -24.34 -0.16 -3.10 16 12 C 0.07 0.96 6.38 38.32 0.24 1.20 16 13 O -0.36 -5.36 9.44 -32.40 -0.31 -5.66 16 14 C 0.06 0.93 2.13 -29.64 -0.06 0.86 16 15 H 0.07 1.03 6.76 -51.93 -0.35 0.68 16 16 C 0.11 1.47 5.25 -4.04 -0.02 1.45 16 17 N -0.72 -7.47 5.21 -60.29 -0.31 -7.79 16 18 C 0.51 5.61 7.14 -10.99 -0.08 5.53 16 19 O -0.54 -8.22 15.75 5.56 0.09 -8.14 16 20 C -0.11 -0.74 2.04 -93.06 -0.19 -0.93 16 21 H 0.10 0.48 7.88 -51.93 -0.41 0.07 16 22 C -0.14 -0.71 4.94 -27.41 -0.14 -0.84 16 23 C 0.11 0.38 6.47 -3.67 -0.02 0.36 16 24 N -0.73 -4.43 5.27 -59.90 -0.32 -4.75 16 25 C 0.52 4.76 7.06 -11.26 -0.08 4.68 16 26 O -0.55 -7.67 17.92 5.55 0.10 -7.57 16 27 C -0.14 -0.94 5.57 -27.50 -0.15 -1.09 16 28 C -0.10 -0.76 4.31 -27.32 -0.12 -0.88 16 29 C 0.11 2.02 5.58 -4.93 -0.03 1.99 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.04 0.99 3.45 -51.93 -0.18 0.82 16 32 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.90 6.66 -51.93 -0.35 0.55 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.40 3.34 7.25 -40.82 -0.30 3.05 16 40 H 0.08 0.34 6.95 -51.93 -0.36 -0.02 16 41 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 42 H 0.08 0.19 6.71 -51.93 -0.35 -0.16 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.40 2.19 8.91 -40.82 -0.36 1.83 16 45 H 0.09 0.39 6.77 -51.93 -0.35 0.04 16 46 H 0.10 0.70 8.13 -51.93 -0.42 0.28 16 47 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 48 H 0.09 0.79 7.76 -51.93 -0.40 0.38 16 49 H 0.08 1.43 8.00 -51.93 -0.42 1.01 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -34.71 381.50 -7.99 -42.70 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.02 Total: 0.95 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.07 Total: 6.11 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.23 Total: -51.55 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.12 Total: -21.36 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.29 Total: 17.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.71 -7.99 -42.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073713565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.396 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds