Wall clock time and date at job start Sat Apr 11 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00215 * 2 1 4 4 H 1.48497 * 109.47053 * 275.54966 * 3 2 1 5 5 H 1.48492 * 109.47425 * 35.55345 * 3 2 1 6 6 H 1.48507 * 109.46801 * 155.55460 * 3 2 1 7 7 C 1.38820 * 119.99386 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00494 * 336.56620 * 7 2 1 9 9 N 1.36935 * 119.99484 * 156.56878 * 7 2 1 10 10 C 1.43423 * 120.63849 * 320.51447 * 9 7 2 11 11 C 1.55330 * 116.24422 * 269.33589 * 10 9 7 12 12 C 1.55191 * 108.86998 * 319.46371 * 11 10 9 13 13 O 1.39804 * 110.45935 * 322.13773 * 12 11 10 14 14 C 1.42377 * 108.53994 * 101.32138 * 13 12 11 15 15 H 1.08997 * 108.62347 * 28.31515 * 14 13 12 16 16 C 1.52994 * 108.62133 * 146.23354 * 14 13 12 17 17 N 1.46507 * 109.47048 * 302.05665 * 16 14 13 18 18 C 1.34773 * 119.99908 * 180.02562 * 17 16 14 19 19 O 1.21277 * 120.00248 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00037 * 179.97438 * 18 17 16 21 21 H 1.09004 * 108.44220 * 62.12527 * 20 18 17 22 22 C 1.51673 * 108.53952 * 304.24958 * 20 18 17 23 23 C 1.52994 * 110.84557 * 171.84405 * 22 20 18 24 24 N 1.47194 * 108.66544 * 86.48070 * 23 22 20 25 25 C 1.33366 * 120.42816 * 288.05089 * 24 23 22 26 26 O 1.21285 * 119.88965 * 180.26267 * 25 24 23 27 27 C 1.51419 * 120.21866 * 0.27635 * 25 24 23 28 28 C 1.51782 * 108.61806 * 179.97438 * 20 18 17 29 29 C 1.46931 * 113.68419 * 267.27582 * 14 13 12 30 30 H 0.97001 * 119.99650 * 0.02562 * 1 2 3 31 31 H 1.09004 * 108.12610 * 31.09164 * 10 9 7 32 32 H 1.09002 * 108.12822 * 147.57254 * 10 9 7 33 33 H 1.08998 * 109.57041 * 79.27565 * 11 10 9 34 34 H 1.08991 * 109.57631 * 199.52351 * 11 10 9 35 35 H 1.09001 * 109.25895 * 82.42408 * 12 11 10 36 36 H 1.09000 * 109.25754 * 201.90053 * 12 11 10 37 37 H 1.08998 * 109.47185 * 182.05676 * 16 14 13 38 38 H 1.09003 * 109.47488 * 62.05465 * 16 14 13 39 39 H 0.96994 * 119.99890 * 359.97438 * 17 16 14 40 40 H 1.08999 * 109.19784 * 51.50656 * 22 20 18 41 41 H 1.08999 * 109.19264 * 292.17926 * 22 20 18 42 42 H 1.08997 * 109.60589 * 326.72519 * 23 22 20 43 43 H 1.08999 * 109.73695 * 206.31203 * 23 22 20 44 44 H 0.96999 * 119.78170 * 108.03041 * 24 23 22 45 45 H 1.09006 * 109.63554 * 311.52440 * 27 25 24 46 46 H 1.08997 * 109.64151 * 190.92011 * 27 25 24 47 47 H 1.09003 * 109.22391 * 67.60814 * 28 20 18 48 48 H 1.08998 * 109.22628 * 308.21830 * 28 20 18 49 49 H 1.08993 * 109.99097 * 176.19330 * 29 14 13 50 50 H 1.08995 * 109.98787 * 297.46957 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3805 2.1140 -1.3935 5 1 1.5115 2.6159 0.8140 6 1 3.6016 1.4089 0.5794 7 6 2.0102 -1.2023 0.0005 8 1 1.5370 -2.0988 0.3729 9 7 3.2949 -1.2514 -0.4710 10 6 3.6763 -0.5013 -1.6324 11 6 3.5354 -1.2294 -2.9972 12 6 4.0019 -2.7002 -2.8320 13 8 5.1042 -2.7699 -1.9748 14 6 4.6548 -3.1974 -0.6932 15 1 3.7644 -3.8124 -0.8239 16 6 5.7487 -4.0537 -0.0525 17 7 6.0517 -5.1915 -0.9243 18 6 6.9906 -6.0876 -0.5611 19 8 7.5850 -5.9519 0.4873 20 6 7.3018 -7.2582 -1.4576 21 1 7.6803 -6.8756 -2.4055 22 6 6.0167 -8.0197 -1.7201 23 6 6.2307 -9.0989 -2.7833 24 7 6.7166 -10.3212 -2.1226 25 6 7.9580 -10.3796 -1.6387 26 8 8.3498 -11.3934 -1.1004 27 6 8.8798 -9.1843 -1.7588 28 6 8.3879 -8.0935 -0.8044 29 6 4.3310 -2.0911 0.2180 30 1 -0.4850 0.8401 -0.0004 31 1 3.0691 0.4033 -1.6664 32 1 4.7172 -0.1999 -1.5147 33 1 2.4930 -1.2105 -3.3152 34 1 4.1537 -0.7300 -3.7431 35 1 3.1855 -3.2920 -2.4182 36 1 4.2784 -3.1014 -3.8070 37 1 5.4043 -4.4190 0.9150 38 1 6.6473 -3.4522 0.0852 39 1 5.5761 -5.3003 -1.7626 40 1 5.2517 -7.3239 -2.0648 41 1 5.6831 -8.4894 -0.7948 42 1 6.9692 -8.7567 -3.5082 43 1 5.2890 -9.3073 -3.2911 44 1 6.1300 -11.0891 -2.0385 45 1 8.8626 -8.8099 -2.7824 46 1 9.8949 -9.4759 -1.4894 47 1 7.9893 -8.5590 0.0970 48 1 9.2240 -7.4481 -0.5353 49 1 3.9313 -2.4833 1.1530 50 1 5.2235 -1.4971 0.4146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073713565.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:45 Heat of formation + Delta-G solvation = -120.533534 kcal Electronic energy + Delta-G solvation = -30672.971724 eV Core-core repulsion = 26506.668307 eV Total energy + Delta-G solvation = -4166.303417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65837 -40.93057 -40.21906 -37.51668 -37.03642 -36.02172 -34.78856 -33.87012 -33.60108 -32.13259 -30.46113 -28.37360 -27.26538 -26.95655 -25.05423 -24.13955 -22.63276 -22.52603 -21.81876 -20.92567 -20.53932 -18.88536 -18.67312 -18.13587 -17.67496 -17.42929 -17.33250 -17.18363 -16.25755 -16.13743 -15.98200 -15.70577 -15.61734 -15.01720 -14.97022 -14.75415 -14.52955 -14.52367 -14.24678 -14.02618 -13.80641 -13.67791 -13.57859 -13.20131 -13.10854 -12.83861 -12.74307 -12.63325 -12.41897 -12.33130 -12.00964 -11.88076 -11.74399 -11.66431 -11.60355 -11.30094 -10.88532 -10.84042 -10.59638 -10.40958 -10.12220 -10.01115 -8.75050 -8.24327 -5.64189 1.28651 1.39301 1.49827 1.62813 1.69098 2.19525 2.39381 2.42886 2.94809 3.03508 3.21676 3.52092 3.58463 3.73455 3.83575 3.99036 4.04195 4.21523 4.23657 4.30588 4.32376 4.41364 4.43959 4.51698 4.54113 4.58813 4.59389 4.68884 4.70187 4.74385 4.78559 4.86813 4.99270 5.01787 5.05838 5.11251 5.13277 5.20445 5.22915 5.26873 5.29784 5.46008 5.91955 5.92611 6.13494 6.30530 6.32215 6.60656 6.96300 7.26534 7.29904 7.58294 8.06056 8.94639 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.002269 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.424741 B =12337.018585 C =12530.186800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.010 4.010 3 Si 0.936 3.064 4 H -0.278 1.278 5 H -0.308 1.308 6 H -0.266 1.266 7 C -0.256 4.256 8 H 0.048 0.952 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.167 4.167 12 C 0.069 3.931 13 O -0.353 6.353 14 C 0.076 3.924 15 H 0.070 0.930 16 C 0.126 3.874 17 N -0.707 5.707 18 C 0.509 3.491 19 O -0.590 6.590 20 C -0.097 4.097 21 H 0.137 0.863 22 C -0.135 4.135 23 C 0.109 3.891 24 N -0.716 5.716 25 C 0.510 3.490 26 O -0.612 6.612 27 C -0.129 4.129 28 C -0.090 4.090 29 C 0.109 3.891 30 H 0.263 0.737 31 H 0.016 0.984 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.415 0.585 40 H 0.104 0.896 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.403 0.597 45 H 0.128 0.872 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.928 -15.787 -12.476 24.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.237 1.237 6 H -0.191 1.191 7 C -0.385 4.385 8 H 0.065 0.935 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.208 4.208 12 C -0.008 4.008 13 O -0.271 6.271 14 C 0.017 3.983 15 H 0.088 0.912 16 C 0.001 3.999 17 N -0.359 5.359 18 C 0.297 3.703 19 O -0.470 6.470 20 C -0.118 4.118 21 H 0.155 0.845 22 C -0.174 4.174 23 C -0.014 4.014 24 N -0.367 5.367 25 C 0.298 3.702 26 O -0.494 6.494 27 C -0.169 4.169 28 C -0.128 4.128 29 C -0.015 4.015 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.252 0.748 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.124 0.876 43 H 0.140 0.860 44 H 0.239 0.761 45 H 0.146 0.854 46 H 0.114 0.886 47 H 0.062 0.938 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.705 -15.851 -11.510 24.494 hybrid contribution -0.986 0.991 0.446 1.467 sum 13.719 -14.860 -11.064 23.053 Atomic orbital electron populations 1.69984 1.07480 1.27463 1.53375 1.26059 0.95512 1.00809 0.98402 0.85948 0.79331 0.80996 0.77138 1.20531 1.23659 1.19059 1.18592 0.88063 0.93085 1.38808 0.93476 1.44199 1.06800 1.56011 1.26413 1.20717 0.97085 0.93252 0.87310 1.23450 1.00645 0.98581 0.98091 1.22503 0.88354 0.95128 0.94832 1.87655 1.30933 1.88481 1.20042 1.21668 0.95854 0.94917 0.85895 0.91235 1.21410 0.97987 0.86968 0.93579 1.45795 1.40232 1.25167 1.24748 1.21301 0.78396 0.83982 0.86636 1.90705 1.52297 1.77065 1.26932 1.21067 0.97683 0.92831 1.00215 0.84541 1.21881 0.95782 0.99008 1.00679 1.22062 1.03127 0.82318 0.93859 1.46066 1.13522 1.18598 1.58471 1.21105 0.83679 0.89079 0.76318 1.90736 1.76766 1.35372 1.46568 1.21974 0.98819 0.92480 1.03577 1.20937 0.98507 0.96074 0.97318 1.21206 0.91865 0.92779 0.95644 0.92750 0.96579 0.94097 0.93101 0.90166 0.93188 0.87906 0.90738 0.91781 0.74771 0.87728 0.92382 0.87641 0.85965 0.76084 0.85404 0.88551 0.93815 0.90251 0.90313 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.35 13.97 21.65 0.30 -56.05 16 2 C -0.01 -0.57 5.27 84.86 0.45 -0.12 16 3 Si 0.94 45.40 25.24 68.60 1.73 47.13 16 4 H -0.28 -12.99 6.74 99.48 0.67 -12.32 16 5 H -0.31 -15.16 7.11 99.48 0.71 -14.46 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.26 -13.56 9.93 84.04 0.83 -12.72 16 8 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 9 N -0.61 -26.57 2.16 -705.99 -1.52 -28.10 16 10 C 0.14 5.77 4.29 87.75 0.38 6.15 16 11 C -0.17 -5.36 6.75 32.15 0.22 -5.14 16 12 C 0.07 1.76 6.38 72.73 0.46 2.23 16 13 O -0.35 -9.31 9.44 -138.86 -1.31 -10.62 16 14 C 0.08 2.07 2.13 28.71 0.06 2.13 16 15 H 0.07 1.92 6.76 -2.39 -0.02 1.91 16 16 C 0.13 2.99 5.25 86.38 0.45 3.44 16 17 N -0.71 -12.69 5.21 -463.06 -2.41 -15.11 16 18 C 0.51 10.13 7.14 87.66 0.63 10.76 16 19 O -0.59 -17.69 15.75 -3.02 -0.05 -17.74 16 20 C -0.10 -1.03 2.04 -12.38 -0.03 -1.06 16 21 H 0.14 0.55 7.88 -2.39 -0.02 0.53 16 22 C -0.13 -0.91 4.94 30.16 0.15 -0.76 16 23 C 0.11 0.27 6.47 86.24 0.56 0.83 16 24 N -0.72 -7.14 5.27 -462.60 -2.44 -9.58 16 25 C 0.51 8.86 7.06 88.10 0.62 9.48 16 26 O -0.61 -17.36 17.92 -3.05 -0.05 -17.41 16 27 C -0.13 -1.48 5.57 30.10 0.17 -1.31 16 28 C -0.09 -1.34 4.31 30.21 0.13 -1.21 16 29 C 0.11 3.79 5.58 83.79 0.47 4.26 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.02 0.74 3.45 -2.38 -0.01 0.73 16 32 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.38 6.66 -2.39 -0.02 1.36 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.41 5.13 7.25 -92.71 -0.67 4.46 16 40 H 0.10 0.35 6.95 -2.39 -0.02 0.33 16 41 H 0.06 0.69 8.05 -2.39 -0.02 0.67 16 42 H 0.11 -0.16 6.71 -2.39 -0.02 -0.18 16 43 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.40 3.74 8.91 -92.71 -0.83 2.92 16 45 H 0.13 0.51 6.77 -2.38 -0.02 0.49 16 46 H 0.10 1.24 8.13 -2.39 -0.02 1.22 16 47 H 0.04 0.91 7.86 -2.39 -0.02 0.89 16 48 H 0.08 1.35 7.76 -2.39 -0.02 1.33 16 49 H 0.08 2.75 8.00 -2.39 -0.02 2.73 16 50 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.85 381.50 -0.77 -80.62 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -0.57 Total: 9.90 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 5.55 Total: 16.96 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -6.07 Total: -108.83 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -1.41 Total: -45.78 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.73 Total: 47.13 kcal Total: -79.85 -0.77 -80.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073713565.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.915 kcal (2) G-P(sol) polarization free energy of solvation -79.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds