Wall clock time and date at job start Sat Apr 11 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48504 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46923 * 300.00059 * 3 2 1 6 6 H 1.48499 * 109.47229 * 59.99763 * 3 2 1 7 7 C 1.38811 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00130 * 163.48210 * 7 2 1 9 9 N 1.36941 * 119.99898 * 343.20035 * 7 2 1 10 10 C 1.47174 * 121.22781 * 333.66858 * 9 7 2 11 11 C 1.53230 * 108.69348 * 230.96215 * 10 9 7 12 12 O 1.43072 * 109.44434 * 308.41133 * 11 10 9 13 13 C 1.42686 * 113.88334 * 61.64151 * 12 11 10 14 14 H 1.08998 * 108.93001 * 54.96409 * 13 12 11 15 15 C 1.52513 * 110.61425 * 174.66778 * 13 12 11 16 16 C 1.53148 * 109.79761 * 61.28304 * 15 13 12 17 17 N 1.46990 * 108.43651 * 54.54454 * 16 15 13 18 18 C 1.34764 * 120.72760 * 125.46934 * 17 16 15 19 19 O 1.21284 * 120.00364 * 179.97438 * 18 17 16 20 20 C 1.50708 * 120.00033 * 359.97438 * 18 17 16 21 21 N 1.46895 * 109.47295 * 180.02562 * 20 18 17 22 22 C 1.47014 * 110.99982 * 293.63443 * 21 20 18 23 23 C 1.53099 * 109.25932 * 177.60575 * 22 21 20 24 24 O 1.43021 * 109.25718 * 56.85432 * 23 22 21 25 25 C 1.43024 * 113.73312 * 301.32961 * 24 23 22 26 26 C 1.47008 * 111.00200 * 170.00276 * 21 20 18 27 27 C 1.46797 * 118.55195 * 305.44299 * 17 16 15 28 28 C 1.47595 * 121.22160 * 153.38744 * 9 7 2 29 29 H 1.08994 * 110.31694 * 7.68959 * 28 9 7 30 30 H 0.97000 * 120.00508 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.59813 * 350.72405 * 10 9 7 32 32 H 1.08993 * 109.60162 * 111.03354 * 10 9 7 33 33 H 1.09000 * 109.47661 * 68.39817 * 11 10 9 34 34 H 1.08993 * 109.47851 * 188.41431 * 11 10 9 35 35 H 1.09005 * 109.41819 * 181.38604 * 15 13 12 36 36 H 1.09006 * 109.41610 * 301.18308 * 15 13 12 37 37 H 1.09002 * 109.64335 * 174.22258 * 16 15 13 38 38 H 1.09001 * 109.64618 * 294.85754 * 16 15 13 39 39 H 1.09002 * 109.47193 * 300.00575 * 20 18 17 40 40 H 1.08997 * 109.46852 * 60.00426 * 20 18 17 41 41 H 1.08999 * 109.51275 * 297.54722 * 22 21 20 42 42 H 1.09000 * 109.50586 * 57.67619 * 22 21 20 43 43 H 1.08996 * 109.50838 * 296.92043 * 23 22 21 44 44 H 1.09001 * 109.50943 * 176.78598 * 23 22 21 45 45 H 1.09006 * 109.50372 * 298.73424 * 25 24 23 46 46 H 1.08997 * 109.53592 * 178.62867 * 25 24 23 47 47 H 1.08998 * 109.50943 * 302.32801 * 26 21 20 48 48 H 1.09006 * 109.51108 * 62.40839 * 26 21 20 49 49 H 1.09001 * 109.51560 * 174.19985 * 27 17 16 50 50 H 1.08994 * 109.51974 * 294.38202 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0568 -1.2215 -0.2654 9 7 1.3694 -2.3626 0.3438 10 6 0.1960 -2.3522 1.2322 11 6 0.4228 -3.3676 2.3572 12 8 0.7886 -4.6303 1.7925 13 6 2.0023 -4.5981 1.0429 14 1 2.7967 -4.1988 1.6733 15 6 2.3896 -6.0012 0.5877 16 6 1.2967 -6.5721 -0.3205 17 7 1.0631 -5.6240 -1.4193 18 6 1.1412 -6.0254 -2.7034 19 8 0.9455 -5.2321 -3.5997 20 6 1.4715 -7.4600 -3.0257 21 7 1.4968 -7.6412 -4.4832 22 6 0.1568 -7.4597 -5.0600 23 6 0.2394 -7.5976 -6.5825 24 8 0.8023 -8.8707 -6.9110 25 6 2.1077 -9.0808 -6.3658 26 6 2.0440 -8.9579 -4.8411 27 6 0.7424 -4.2305 -1.0873 28 6 1.8262 -3.6692 -0.1684 29 1 2.7703 -3.5576 -0.7016 30 1 -0.4851 0.8400 0.0004 31 1 0.0687 -1.3570 1.6581 32 1 -0.6943 -2.6238 0.6652 33 1 1.2226 -3.0156 3.0087 34 1 -0.4941 -3.4800 2.9355 35 1 3.3305 -5.9574 0.0390 36 1 2.5093 -6.6448 1.4593 37 1 1.6210 -7.5304 -0.7263 38 1 0.3778 -6.7047 0.2506 39 1 2.4485 -7.7097 -2.6119 40 1 0.7151 -8.1135 -2.5911 41 1 -0.5168 -8.2186 -4.6618 42 1 -0.2185 -6.4688 -4.8042 43 1 0.8703 -6.8057 -6.9860 44 1 -0.7604 -7.5206 -7.0098 45 1 2.7929 -8.3319 -6.7630 46 1 2.4598 -10.0763 -6.6363 47 1 3.0463 -9.0607 -4.4255 48 1 1.4011 -9.7408 -4.4387 49 1 0.7006 -3.6387 -2.0017 50 1 -0.2221 -4.1894 -0.5813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074219404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:00 Heat of formation + Delta-G solvation = -72.089857 kcal Electronic energy + Delta-G solvation = -31653.777586 eV Core-core repulsion = 27489.574844 eV Total energy + Delta-G solvation = -4164.202742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.38266 -39.52346 -38.42884 -35.93214 -35.41672 -34.66300 -31.87664 -31.54474 -31.30571 -29.93067 -29.07148 -27.40520 -25.59714 -24.30331 -24.16915 -23.67505 -22.70652 -21.48431 -20.63616 -19.42326 -18.27196 -17.24302 -16.92481 -16.58504 -16.22877 -15.74357 -15.58509 -15.45317 -15.20959 -15.13844 -14.92912 -14.57163 -14.30929 -14.11276 -13.99704 -13.53389 -13.33611 -13.09045 -12.79141 -12.65512 -12.35995 -12.19489 -12.15926 -12.01684 -11.53406 -11.44768 -11.34266 -11.08919 -10.99827 -10.81675 -10.69038 -10.62300 -10.25017 -10.19718 -10.03574 -9.95220 -9.65418 -9.38339 -9.01935 -8.61407 -8.52332 -8.23659 -6.78119 -5.88227 -3.32487 2.86210 3.06596 3.32717 3.40877 3.42860 3.63487 3.77081 4.28924 4.39639 4.54861 4.69264 4.81045 4.88767 4.95082 4.99915 5.05954 5.10626 5.17955 5.23879 5.27530 5.32089 5.36496 5.40644 5.50298 5.58017 5.60069 5.73857 5.75641 5.80905 5.84488 5.97490 6.01240 6.05728 6.12535 6.27522 6.32181 6.40619 6.60572 6.68050 6.74008 6.76743 6.95430 6.97740 7.06182 7.45656 7.69599 7.74285 7.85759 8.28089 8.48813 9.06582 9.68128 10.25477 11.19219 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.003037 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.647185 B = 9216.896834 C =10365.462610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.137 3.863 11 C 0.040 3.960 12 O -0.388 6.388 13 C 0.080 3.920 14 H 0.052 0.948 15 C -0.123 4.123 16 C 0.113 3.887 17 N -0.607 5.607 18 C 0.511 3.489 19 O -0.525 6.525 20 C 0.039 3.961 21 N -0.519 5.519 22 C 0.013 3.987 23 C 0.066 3.934 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.018 3.982 27 C 0.108 3.892 28 C 0.134 3.866 29 H 0.074 0.926 30 H 0.255 0.745 31 H 0.095 0.905 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.108 0.892 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.042 0.958 49 H 0.089 0.911 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -19.185 -2.935 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.307 5.307 10 C 0.012 3.988 11 C -0.038 4.038 12 O -0.307 6.307 13 C 0.020 3.980 14 H 0.070 0.930 15 C -0.161 4.161 16 C -0.010 4.010 17 N -0.342 5.342 18 C 0.297 3.703 19 O -0.401 6.401 20 C -0.092 4.092 21 N -0.245 5.245 22 C -0.115 4.115 23 C -0.011 4.011 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 C -0.015 4.015 28 C 0.025 3.975 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.107 0.893 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.741 -18.493 -3.711 19.060 hybrid contribution 0.117 0.759 0.725 1.056 sum 2.858 -17.734 -2.987 18.210 Atomic orbital electron populations 1.70024 1.05266 1.25678 1.53370 1.25067 0.95352 0.98526 1.00412 0.86176 0.79355 0.83635 0.77333 1.20185 1.21560 1.21490 1.19209 0.92509 0.84174 1.42526 0.91296 1.44340 1.33850 1.00807 1.51686 1.21464 0.89053 0.98601 0.89729 1.23322 0.98869 0.84902 0.96688 1.87705 1.41520 1.32064 1.69418 1.22312 0.87196 0.94579 0.93869 0.93004 1.21798 0.98527 0.96336 0.99482 1.21637 0.99480 0.91438 0.88472 1.48312 1.69450 1.11572 1.04854 1.20335 0.77622 0.89793 0.82525 1.90672 1.49219 1.54866 1.45369 1.22020 1.02906 0.95030 0.89269 1.61845 1.24071 1.29330 1.09238 1.22975 0.88992 1.03664 0.95836 1.22666 0.99244 0.85454 0.93710 1.87958 1.31946 1.36273 1.74663 1.22627 0.85233 1.01903 0.91449 1.22818 1.00846 0.89685 0.97685 1.22180 0.99669 0.78975 1.00716 1.21598 0.96617 0.87109 0.92127 0.90768 0.93478 0.88645 0.95339 0.94089 0.90145 0.90439 0.90445 0.90683 0.90588 0.87912 0.92057 0.94572 0.87409 0.91884 0.88456 0.92124 0.88529 0.89548 0.93972 0.89277 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.15 55.49 0.62 -24.84 16 2 C 0.01 0.15 4.96 -17.43 -0.09 0.07 16 3 Si 0.91 21.41 29.58 -169.99 -5.03 16.38 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.83 9.69 -15.06 -0.15 -6.98 16 8 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 9 N -0.58 -14.12 2.72 -163.91 -0.45 -14.57 16 10 C 0.14 3.14 4.93 -3.56 -0.02 3.13 16 11 C 0.04 0.75 6.98 37.28 0.26 1.01 16 12 O -0.39 -6.98 9.59 -35.23 -0.34 -7.32 16 13 C 0.08 1.36 2.74 -26.64 -0.07 1.29 16 14 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 15 C -0.12 -1.54 5.82 -26.90 -0.16 -1.70 16 16 C 0.11 1.37 6.18 -3.70 -0.02 1.34 16 17 N -0.61 -9.60 2.96 -173.10 -0.51 -10.11 16 18 C 0.51 8.14 7.41 -10.99 -0.08 8.06 16 19 O -0.53 -10.54 13.76 5.55 0.08 -10.46 16 20 C 0.04 0.45 3.79 -4.97 -0.02 0.43 16 21 N -0.52 -6.35 4.46 -235.76 -1.05 -7.40 16 22 C 0.01 0.16 5.29 -3.71 -0.02 0.14 16 23 C 0.07 0.75 7.01 37.21 0.26 1.01 16 24 O -0.39 -4.55 10.83 -35.23 -0.38 -4.93 16 25 C 0.07 0.60 7.01 37.21 0.26 0.86 16 26 C 0.02 0.16 5.64 -3.72 -0.02 0.14 16 27 C 0.11 2.16 5.61 -4.00 -0.02 2.14 16 28 C 0.13 2.73 3.02 -67.10 -0.20 2.53 16 29 H 0.07 1.57 7.99 -51.93 -0.42 1.16 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.10 2.43 6.14 -51.93 -0.32 2.11 16 32 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.65 5.95 -51.93 -0.31 0.35 16 38 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 39 H 0.10 0.96 7.61 -51.93 -0.40 0.57 16 40 H 0.06 0.61 7.91 -51.93 -0.41 0.20 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.11 1.61 5.88 -51.93 -0.31 1.31 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 48 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 2.10 7.00 -51.93 -0.36 1.73 16 50 H 0.07 1.45 6.56 -51.93 -0.34 1.11 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -31.82 376.41 -9.74 -41.56 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.26 Total: 2.55 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -0.09 Total: 13.48 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -1.39 Total: -56.92 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.64 Total: -22.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.82 -9.74 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074219404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.534 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds