Wall clock time and date at job start Sat Apr 11 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48504 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46923 * 300.00059 * 3 2 1 6 6 H 1.48499 * 109.47229 * 59.99763 * 3 2 1 7 7 C 1.38811 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00130 * 163.48210 * 7 2 1 9 9 N 1.36941 * 119.99898 * 343.20035 * 7 2 1 10 10 C 1.47174 * 121.22781 * 333.66858 * 9 7 2 11 11 C 1.53230 * 108.69348 * 230.96215 * 10 9 7 12 12 O 1.43072 * 109.44434 * 308.41133 * 11 10 9 13 13 C 1.42686 * 113.88334 * 61.64151 * 12 11 10 14 14 H 1.08998 * 108.93001 * 54.96409 * 13 12 11 15 15 C 1.52513 * 110.61425 * 174.66778 * 13 12 11 16 16 C 1.53148 * 109.79761 * 61.28304 * 15 13 12 17 17 N 1.46990 * 108.43651 * 54.54454 * 16 15 13 18 18 C 1.34764 * 120.72760 * 125.46934 * 17 16 15 19 19 O 1.21284 * 120.00364 * 179.97438 * 18 17 16 20 20 C 1.50708 * 120.00033 * 359.97438 * 18 17 16 21 21 N 1.46895 * 109.47295 * 180.02562 * 20 18 17 22 22 C 1.47014 * 110.99982 * 293.63443 * 21 20 18 23 23 C 1.53099 * 109.25932 * 177.60575 * 22 21 20 24 24 O 1.43021 * 109.25718 * 56.85432 * 23 22 21 25 25 C 1.43024 * 113.73312 * 301.32961 * 24 23 22 26 26 C 1.47008 * 111.00200 * 170.00276 * 21 20 18 27 27 C 1.46797 * 118.55195 * 305.44299 * 17 16 15 28 28 C 1.47595 * 121.22160 * 153.38744 * 9 7 2 29 29 H 1.08994 * 110.31694 * 7.68959 * 28 9 7 30 30 H 0.97000 * 120.00508 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.59813 * 350.72405 * 10 9 7 32 32 H 1.08993 * 109.60162 * 111.03354 * 10 9 7 33 33 H 1.09000 * 109.47661 * 68.39817 * 11 10 9 34 34 H 1.08993 * 109.47851 * 188.41431 * 11 10 9 35 35 H 1.09005 * 109.41819 * 181.38604 * 15 13 12 36 36 H 1.09006 * 109.41610 * 301.18308 * 15 13 12 37 37 H 1.09002 * 109.64335 * 174.22258 * 16 15 13 38 38 H 1.09001 * 109.64618 * 294.85754 * 16 15 13 39 39 H 1.09002 * 109.47193 * 300.00575 * 20 18 17 40 40 H 1.08997 * 109.46852 * 60.00426 * 20 18 17 41 41 H 1.08999 * 109.51275 * 297.54722 * 22 21 20 42 42 H 1.09000 * 109.50586 * 57.67619 * 22 21 20 43 43 H 1.08996 * 109.50838 * 296.92043 * 23 22 21 44 44 H 1.09001 * 109.50943 * 176.78598 * 23 22 21 45 45 H 1.09006 * 109.50372 * 298.73424 * 25 24 23 46 46 H 1.08997 * 109.53592 * 178.62867 * 25 24 23 47 47 H 1.08998 * 109.50943 * 302.32801 * 26 21 20 48 48 H 1.09006 * 109.51108 * 62.40839 * 26 21 20 49 49 H 1.09001 * 109.51560 * 174.19985 * 27 17 16 50 50 H 1.08994 * 109.51974 * 294.38202 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0568 -1.2215 -0.2654 9 7 1.3694 -2.3626 0.3438 10 6 0.1960 -2.3522 1.2322 11 6 0.4228 -3.3676 2.3572 12 8 0.7886 -4.6303 1.7925 13 6 2.0023 -4.5981 1.0429 14 1 2.7967 -4.1988 1.6733 15 6 2.3896 -6.0012 0.5877 16 6 1.2967 -6.5721 -0.3205 17 7 1.0631 -5.6240 -1.4193 18 6 1.1412 -6.0254 -2.7034 19 8 0.9455 -5.2321 -3.5997 20 6 1.4715 -7.4600 -3.0257 21 7 1.4968 -7.6412 -4.4832 22 6 0.1568 -7.4597 -5.0600 23 6 0.2394 -7.5976 -6.5825 24 8 0.8023 -8.8707 -6.9110 25 6 2.1077 -9.0808 -6.3658 26 6 2.0440 -8.9579 -4.8411 27 6 0.7424 -4.2305 -1.0873 28 6 1.8262 -3.6692 -0.1684 29 1 2.7703 -3.5576 -0.7016 30 1 -0.4851 0.8400 0.0004 31 1 0.0687 -1.3570 1.6581 32 1 -0.6943 -2.6238 0.6652 33 1 1.2226 -3.0156 3.0087 34 1 -0.4941 -3.4800 2.9355 35 1 3.3305 -5.9574 0.0390 36 1 2.5093 -6.6448 1.4593 37 1 1.6210 -7.5304 -0.7263 38 1 0.3778 -6.7047 0.2506 39 1 2.4485 -7.7097 -2.6119 40 1 0.7151 -8.1135 -2.5911 41 1 -0.5168 -8.2186 -4.6618 42 1 -0.2185 -6.4688 -4.8042 43 1 0.8703 -6.8057 -6.9860 44 1 -0.7604 -7.5206 -7.0098 45 1 2.7929 -8.3319 -6.7630 46 1 2.4598 -10.0763 -6.6363 47 1 3.0463 -9.0607 -4.4255 48 1 1.4011 -9.7408 -4.4387 49 1 0.7006 -3.6387 -2.0017 50 1 -0.2221 -4.1894 -0.5813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074219404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:59 Heat of formation + Delta-G solvation = -96.299397 kcal Electronic energy + Delta-G solvation = -31654.827390 eV Core-core repulsion = 27489.574844 eV Total energy + Delta-G solvation = -4165.252546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62850 -40.63343 -39.69847 -37.19667 -36.52801 -36.36439 -33.56413 -33.05804 -32.11358 -31.34235 -30.25358 -29.10248 -26.79362 -25.67144 -25.22261 -24.98983 -24.26037 -22.90878 -21.49667 -20.85120 -19.63961 -18.91112 -18.31826 -17.55014 -17.19844 -17.05309 -16.96367 -16.78171 -16.69949 -16.18785 -16.10228 -16.00051 -15.51416 -15.40219 -15.31130 -14.85562 -14.65081 -14.42334 -14.32816 -13.96978 -13.74739 -13.39518 -13.18875 -13.09190 -13.02752 -12.85418 -12.64441 -12.45872 -12.36801 -12.26523 -12.23907 -12.08059 -11.86389 -11.69093 -11.52150 -11.21481 -10.93462 -10.78423 -10.55020 -10.49695 -9.67757 -9.36450 -8.72168 -7.94645 -5.42363 1.41580 1.43690 1.54113 1.65027 1.89159 2.44218 2.74899 2.89842 2.96684 3.20035 3.44446 3.51516 3.85283 3.95679 3.96764 4.00553 4.10854 4.16082 4.19361 4.21498 4.25763 4.28176 4.38103 4.43361 4.46033 4.52876 4.56944 4.64234 4.64605 4.75372 4.79972 4.81981 4.86535 4.87335 4.93274 4.99628 5.01428 5.05458 5.23756 5.30935 5.47658 5.56027 5.58578 5.79618 5.95260 6.16432 6.24806 6.35190 6.53350 7.02422 7.24952 7.69583 8.23725 9.10095 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015077 B = 0.003037 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.647185 B = 9216.896834 C =10365.462610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.046 4.046 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.266 4.266 8 H 0.066 0.934 9 N -0.603 5.603 10 C 0.144 3.856 11 C 0.053 3.947 12 O -0.382 6.382 13 C 0.084 3.916 14 H 0.049 0.951 15 C -0.116 4.116 16 C 0.110 3.890 17 N -0.607 5.607 18 C 0.503 3.497 19 O -0.578 6.578 20 C 0.050 3.950 21 N -0.543 5.543 22 C 0.018 3.982 23 C 0.069 3.931 24 O -0.402 6.402 25 C 0.057 3.943 26 C 0.021 3.979 27 C 0.128 3.872 28 C 0.131 3.869 29 H 0.061 0.939 30 H 0.252 0.748 31 H 0.066 0.934 32 H 0.000 1.000 33 H 0.046 0.954 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.052 0.948 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.054 0.946 49 H 0.039 0.961 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -22.921 -1.739 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.327 5.327 10 C 0.019 3.981 11 C -0.025 4.025 12 O -0.301 6.301 13 C 0.025 3.975 14 H 0.067 0.933 15 C -0.154 4.154 16 C -0.012 4.012 17 N -0.340 5.340 18 C 0.292 3.708 19 O -0.457 6.457 20 C -0.081 4.081 21 N -0.269 5.269 22 C -0.110 4.110 23 C -0.008 4.008 24 O -0.321 6.321 25 C -0.019 4.019 26 C -0.106 4.106 27 C 0.003 3.997 28 C 0.023 3.977 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.018 0.982 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.093 0.907 39 H 0.155 0.845 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.127 0.873 45 H 0.071 0.929 46 H 0.143 0.857 47 H 0.129 0.871 48 H 0.072 0.928 49 H 0.057 0.943 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.599 -22.300 -2.490 22.905 hybrid contribution -0.438 1.888 0.273 1.958 sum 4.161 -20.411 -2.217 20.949 Atomic orbital electron populations 1.70177 1.06616 1.25997 1.54891 1.25809 0.96102 1.01524 1.00777 0.85188 0.78611 0.79655 0.76861 1.19085 1.22216 1.21072 1.19484 0.92650 0.85600 1.41806 0.91633 1.44574 1.33914 1.01612 1.52558 1.21293 0.87839 0.98480 0.90490 1.23138 1.00423 0.84007 0.94890 1.87724 1.42073 1.31069 1.69216 1.22376 0.86649 0.96832 0.91650 0.93334 1.21858 0.99042 0.93431 1.01038 1.21982 0.99583 0.92266 0.87331 1.48342 1.69191 1.10145 1.06368 1.21337 0.76217 0.91618 0.81631 1.90663 1.51314 1.56819 1.46931 1.22046 1.05396 0.91242 0.89376 1.61791 1.23755 1.31649 1.09750 1.22811 0.89725 1.01963 0.96525 1.22610 0.99691 0.85269 0.93199 1.87942 1.33165 1.35863 1.75085 1.22879 0.84015 1.03236 0.91792 1.22903 1.02110 0.88135 0.97456 1.21523 0.98632 0.81642 0.97922 1.21749 0.95614 0.86421 0.93885 0.92097 0.93922 0.91587 0.98197 0.93554 0.87408 0.88886 0.86890 0.85730 0.90697 0.84476 0.89342 0.93709 0.90745 0.93378 0.87295 0.92917 0.85722 0.87114 0.92794 0.94253 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 11.15 21.65 0.24 -55.18 16 2 C -0.05 -2.60 4.96 84.86 0.42 -2.18 16 3 Si 0.97 45.39 29.58 68.60 2.03 47.42 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.27 -14.80 9.69 84.03 0.81 -13.98 16 8 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 9 N -0.60 -30.41 2.72 -672.49 -1.83 -32.24 16 10 C 0.14 6.92 4.93 86.33 0.43 7.35 16 11 C 0.05 1.95 6.98 72.06 0.50 2.46 16 12 O -0.38 -13.03 9.59 -148.98 -1.43 -14.46 16 13 C 0.08 2.72 2.74 30.65 0.08 2.80 16 14 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 15 C -0.12 -2.39 5.82 30.48 0.18 -2.22 16 16 C 0.11 2.21 6.18 86.34 0.53 2.74 16 17 N -0.61 -18.62 2.96 -819.97 -2.43 -21.05 16 18 C 0.50 15.69 7.41 87.66 0.65 16.34 16 19 O -0.58 -24.32 13.76 -3.04 -0.04 -24.37 16 20 C 0.05 0.96 3.79 85.56 0.32 1.29 16 21 N -0.54 -12.10 4.46 -899.80 -4.01 -16.11 16 22 C 0.02 0.44 5.29 86.31 0.46 0.90 16 23 C 0.07 1.57 7.01 72.02 0.50 2.07 16 24 O -0.40 -8.76 10.83 -148.98 -1.61 -10.38 16 25 C 0.06 0.91 7.01 72.01 0.50 1.42 16 26 C 0.02 0.31 5.64 86.31 0.49 0.80 16 27 C 0.13 5.38 5.61 86.25 0.48 5.87 16 28 C 0.13 5.47 3.02 44.93 0.14 5.60 16 29 H 0.06 2.66 7.99 -2.39 -0.02 2.64 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.07 3.53 6.14 -2.39 -0.01 3.52 16 32 H 0.00 0.00 7.17 -2.39 -0.02 -0.02 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.12 1.36 5.95 -2.39 -0.01 1.34 16 38 H 0.07 1.60 7.94 -2.39 -0.02 1.58 16 39 H 0.14 1.76 7.61 -2.39 -0.02 1.74 16 40 H 0.09 1.30 7.91 -2.39 -0.02 1.28 16 41 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 2.34 5.88 -2.39 -0.01 2.33 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.11 1.10 8.09 -2.39 -0.02 1.08 16 48 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.04 2.01 7.00 -2.39 -0.02 1.99 16 50 H 0.05 2.13 6.56 -2.39 -0.02 2.11 16 Total: -1.00 -76.36 376.41 -1.65 -78.01 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.93 Total: 17.10 kcal Atomic # 6 Polarization: 24.75 SS G_CDS: 6.50 Total: 31.25 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -8.03 Total: -124.58 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -3.08 Total: -49.20 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.36 -1.65 -78.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074219404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.289 kcal (2) G-P(sol) polarization free energy of solvation -76.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds