Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47140 * 270.00375 * 3 2 1 5 5 H 1.48502 * 109.47213 * 29.99965 * 3 2 1 6 6 H 1.48495 * 109.47189 * 150.00071 * 3 2 1 7 7 C 1.38804 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00728 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99775 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00157 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.54142 * 324.82381 * 10 9 7 12 12 C 1.53177 * 109.54279 * 84.99869 * 10 9 7 13 13 C 1.53093 * 109.16253 * 176.93502 * 12 10 9 14 14 O 1.42901 * 109.41524 * 302.39355 * 13 12 10 15 15 C 1.42899 * 114.09891 * 61.15943 * 14 13 12 16 16 H 1.09001 * 109.48232 * 58.83392 * 15 14 13 17 17 C 1.53001 * 109.48279 * 178.85815 * 15 14 13 18 18 C 1.53046 * 109.46126 * 179.97438 * 17 15 14 19 19 C 1.53159 * 109.32667 * 181.38514 * 18 17 15 20 20 N 1.46928 * 108.76987 * 305.35456 * 19 18 17 21 21 C 1.34771 * 120.63178 * 233.63011 * 20 19 18 22 22 O 1.21284 * 119.99847 * 179.97438 * 21 20 19 23 23 C 1.50699 * 120.00350 * 359.97438 * 21 20 19 24 24 C 1.50690 * 109.47700 * 179.97438 * 23 21 20 25 25 N 1.34776 * 120.00401 * 179.97438 * 24 23 21 26 26 O 1.21281 * 119.99857 * 0.02562 * 24 23 21 27 27 C 1.46931 * 118.73792 * 53.61250 * 20 19 18 28 28 C 1.53039 * 109.45758 * 300.02571 * 17 15 14 29 29 C 1.53095 * 109.41322 * 298.84118 * 15 14 13 30 30 H 0.97002 * 119.99852 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99783 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.52250 * 57.03438 * 12 10 9 33 33 H 1.08995 * 109.52240 * 296.84240 * 12 10 9 34 34 H 1.09003 * 109.48280 * 182.40752 * 13 12 10 35 35 H 1.09002 * 109.48971 * 62.37975 * 13 12 10 36 36 H 1.09002 * 109.45884 * 59.99666 * 17 15 14 37 37 H 1.08996 * 109.49379 * 301.32134 * 18 17 15 38 38 H 1.08994 * 109.49581 * 61.41903 * 18 17 15 39 39 H 1.08999 * 109.58991 * 185.56748 * 19 18 17 40 40 H 1.08998 * 109.59395 * 65.13869 * 19 18 17 41 41 H 1.09005 * 109.47033 * 300.00164 * 23 21 20 42 42 H 1.09001 * 109.47321 * 59.99201 * 23 21 20 43 43 H 0.96999 * 120.00123 * 359.97438 * 25 24 23 44 44 H 0.97000 * 120.00132 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.58425 * 186.61021 * 27 20 19 46 46 H 1.08999 * 109.58795 * 66.17471 * 27 20 19 47 47 H 1.08997 * 109.49901 * 298.57269 * 28 17 15 48 48 H 1.08992 * 109.50107 * 58.67848 * 28 17 15 49 49 H 1.08998 * 109.52426 * 177.51730 * 29 15 14 50 50 H 1.09000 * 109.51856 * 297.70008 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5675 -3.2063 0.5921 12 6 4.2588 -2.9779 -1.4380 13 6 5.0907 -4.2630 -1.4353 14 8 6.3621 -4.0047 -0.8363 15 6 6.2893 -3.5731 0.5240 16 1 5.7842 -4.3332 1.1200 17 6 7.7032 -3.3555 1.0667 18 6 7.6247 -2.8926 2.5233 19 6 9.0400 -2.6425 3.0527 20 7 9.8427 -3.8560 2.8479 21 6 10.5022 -4.4248 3.8764 22 8 11.1611 -5.4266 3.6944 23 6 10.4210 -3.8160 5.2526 24 6 11.2404 -4.6372 6.2143 25 7 11.3162 -4.2792 7.5115 26 8 11.8326 -5.6198 5.8210 27 6 9.9124 -4.4378 1.5005 28 6 8.4869 -4.6677 0.9884 29 6 5.5056 -2.2601 0.6001 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 4.7597 -2.2211 -2.0417 33 1 3.2726 -3.1832 -1.8542 34 1 5.2345 -4.6052 -2.4602 35 1 4.5698 -5.0322 -0.8651 36 1 8.2079 -2.5950 0.4707 37 1 7.0467 -1.9704 2.5813 38 1 7.1423 -3.6633 3.1244 39 1 8.9962 -2.4086 4.1164 40 1 9.4909 -1.8106 2.5118 41 1 10.8080 -2.7974 5.2227 42 1 9.3822 -3.8004 5.5823 43 1 10.8435 -3.4926 7.8259 44 1 11.8440 -4.8075 8.1304 45 1 10.4441 -5.3884 1.5401 46 1 10.4343 -3.7522 0.8329 47 1 7.9964 -5.4216 1.6041 48 1 8.5227 -5.0090 -0.0460 49 1 5.4110 -1.9521 1.6413 50 1 6.0317 -1.4889 0.0375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075388952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -112.234199 kcal Electronic energy + Delta-G solvation = -30276.686415 eV Core-core repulsion = 26110.742884 eV Total energy + Delta-G solvation = -4165.943531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.83660 -39.76188 -38.93291 -37.26134 -35.25789 -34.15816 -33.78625 -32.32176 -31.89911 -30.44514 -29.89821 -29.71497 -25.99081 -24.30832 -23.52319 -22.86689 -22.14325 -21.29397 -20.44813 -19.92758 -19.17054 -17.93452 -17.65511 -17.62258 -16.38304 -16.25178 -16.02103 -15.86280 -15.74962 -14.93115 -14.72920 -14.44172 -14.34891 -14.04771 -13.89861 -13.79170 -13.58715 -13.52434 -13.27238 -13.10889 -12.75625 -12.49734 -12.41817 -12.34871 -11.55710 -11.49728 -11.35633 -11.13639 -11.05157 -10.93526 -10.74573 -10.68181 -10.44717 -10.34894 -10.17065 -10.03365 -9.84567 -9.70117 -9.65773 -9.26726 -8.95307 -8.85975 -7.33525 -5.82848 -3.18842 2.25436 2.46344 2.52620 3.23457 3.31363 3.34810 3.40167 3.79882 4.03445 4.40336 4.47810 4.52873 4.53566 4.70195 4.75358 4.78463 4.82698 5.04469 5.07948 5.14697 5.23005 5.24460 5.30901 5.37540 5.44323 5.49662 5.58202 5.63429 5.68227 5.69901 5.80396 5.83064 5.90611 5.97411 6.07801 6.13384 6.25657 6.27497 6.32416 6.39641 6.47644 6.68874 6.89511 6.90833 7.12192 7.44554 7.87762 7.92746 8.03985 8.36188 9.14307 9.86909 10.06901 11.35396 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.002350 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.018645 B =11910.187302 C =13119.402128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.747 5.747 10 C 0.182 3.818 11 H 0.053 0.947 12 C -0.172 4.172 13 C 0.065 3.935 14 O -0.382 6.382 15 C 0.102 3.898 16 H 0.056 0.944 17 C -0.077 4.077 18 C -0.134 4.134 19 C 0.107 3.893 20 N -0.615 5.615 21 C 0.514 3.486 22 O -0.499 6.499 23 C -0.168 4.168 24 C 0.515 3.485 25 N -0.861 5.861 26 O -0.497 6.497 27 C 0.113 3.887 28 C -0.125 4.125 29 C -0.157 4.157 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.400 0.600 44 H 0.403 0.597 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.732 -5.213 10.733 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.389 5.389 10 C 0.073 3.927 11 H 0.071 0.929 12 C -0.212 4.212 13 C -0.012 4.012 14 O -0.302 6.302 15 C 0.043 3.957 16 H 0.073 0.927 17 C -0.096 4.096 18 C -0.172 4.172 19 C -0.015 4.015 20 N -0.351 5.351 21 C 0.300 3.700 22 O -0.372 6.372 23 C -0.211 4.211 24 C 0.297 3.703 25 N -0.427 5.427 26 O -0.369 6.369 27 C -0.009 4.009 28 C -0.163 4.163 29 C -0.195 4.195 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.228 0.772 44 H 0.234 0.766 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.336 -6.477 10.096 25.353 hybrid contribution -0.130 1.783 0.484 1.852 sum 22.206 -4.694 10.580 25.041 Atomic orbital electron populations 1.69706 1.05105 1.25858 1.57419 1.24683 0.95243 0.97241 1.02006 0.86538 0.79129 0.84963 0.77797 1.21106 1.21751 1.20356 1.19064 0.80559 0.94680 1.43118 0.89269 1.42772 1.03987 1.01897 1.90230 1.20176 0.90127 0.89395 0.93027 0.92860 1.22892 1.00338 0.96950 1.01066 1.22583 0.84185 0.96792 0.97666 1.87818 1.29298 1.87298 1.25762 1.22006 0.94927 0.95209 0.83517 0.92654 1.21100 0.94867 0.98096 0.95488 1.22029 0.96248 1.02988 0.95943 1.21783 0.91256 0.86849 1.01661 1.48160 1.49468 1.28333 1.09095 1.19915 0.80035 0.84568 0.85509 1.90855 1.39170 1.23723 1.83412 1.21646 1.03493 1.01844 0.94102 1.20017 0.81810 0.85535 0.82931 1.43867 1.55397 1.33269 1.10120 1.90918 1.43486 1.25878 1.76637 1.21634 0.97552 0.99955 0.81742 1.21904 0.94487 0.97384 1.02494 1.22576 0.97239 0.97705 1.01989 0.93032 0.80650 0.91857 0.90766 0.89566 0.93667 0.90179 0.89558 0.91068 0.89748 0.90889 0.86037 0.85915 0.77233 0.76628 0.88986 0.91458 0.91690 0.89615 0.90796 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.97 55.49 0.78 -27.97 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.51 27.73 -169.99 -4.71 16.80 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 7 C -0.24 -6.68 10.41 -15.06 -0.16 -6.83 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.75 -16.94 4.94 -53.25 -0.26 -17.20 16 10 C 0.18 3.31 2.86 -67.75 -0.19 3.12 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 C -0.17 -2.88 5.72 -26.59 -0.15 -3.03 16 13 C 0.06 0.89 6.84 37.21 0.25 1.14 16 14 O -0.38 -5.25 9.71 -35.23 -0.34 -5.59 16 15 C 0.10 1.25 2.22 -26.68 -0.06 1.19 16 16 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 17 C -0.08 -0.74 1.95 -90.58 -0.18 -0.92 16 18 C -0.13 -1.04 5.04 -26.63 -0.13 -1.17 16 19 C 0.11 0.66 6.34 -3.73 -0.02 0.63 16 20 N -0.61 -5.42 2.97 -172.78 -0.51 -5.93 16 21 C 0.51 5.49 7.69 -10.99 -0.08 5.40 16 22 O -0.50 -7.89 13.59 -18.96 -0.26 -8.15 16 23 C -0.17 -1.03 4.53 -29.04 -0.13 -1.16 16 24 C 0.51 4.56 8.09 -10.99 -0.09 4.47 16 25 N -0.86 -3.65 8.87 31.22 0.28 -3.38 16 26 O -0.50 -7.42 15.02 -18.96 -0.28 -7.71 16 27 C 0.11 1.08 6.43 -3.70 -0.02 1.05 16 28 C -0.12 -1.20 5.23 -26.61 -0.14 -1.34 16 29 C -0.16 -2.24 4.47 -26.59 -0.12 -2.35 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.66 6.42 -51.93 -0.33 0.33 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.29 5.93 -51.93 -0.31 -0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 0.36 7.94 -51.93 -0.41 -0.05 16 42 H 0.12 0.42 7.69 -51.93 -0.40 0.02 16 43 H 0.40 0.30 8.83 -40.82 -0.36 -0.06 16 44 H 0.40 1.55 8.93 -40.82 -0.36 1.19 16 45 H 0.09 1.03 7.00 -51.93 -0.36 0.66 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 0.87 7.64 -51.93 -0.40 0.47 16 49 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 50 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -38.04 387.49 -8.98 -47.02 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.17 Total: 6.05 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.32 Total: 0.22 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.28 Total: -54.48 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.88 Total: -21.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.04 -8.98 -47.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075388952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.215 kcal (2) G-P(sol) polarization free energy of solvation -38.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds