Wall clock time and date at job start Sat Apr 11 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00003 * 2 1 4 4 H 1.48504 * 109.47140 * 270.00375 * 3 2 1 5 5 H 1.48502 * 109.47213 * 29.99965 * 3 2 1 6 6 H 1.48495 * 109.47189 * 150.00071 * 3 2 1 7 7 C 1.38804 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00728 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99775 * 179.97438 * 7 2 1 10 10 C 1.46501 * 120.00157 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.54142 * 324.82381 * 10 9 7 12 12 C 1.53177 * 109.54279 * 84.99869 * 10 9 7 13 13 C 1.53093 * 109.16253 * 176.93502 * 12 10 9 14 14 O 1.42901 * 109.41524 * 302.39355 * 13 12 10 15 15 C 1.42899 * 114.09891 * 61.15943 * 14 13 12 16 16 H 1.09001 * 109.48232 * 58.83392 * 15 14 13 17 17 C 1.53001 * 109.48279 * 178.85815 * 15 14 13 18 18 C 1.53046 * 109.46126 * 179.97438 * 17 15 14 19 19 C 1.53159 * 109.32667 * 181.38514 * 18 17 15 20 20 N 1.46928 * 108.76987 * 305.35456 * 19 18 17 21 21 C 1.34771 * 120.63178 * 233.63011 * 20 19 18 22 22 O 1.21284 * 119.99847 * 179.97438 * 21 20 19 23 23 C 1.50699 * 120.00350 * 359.97438 * 21 20 19 24 24 C 1.50690 * 109.47700 * 179.97438 * 23 21 20 25 25 N 1.34776 * 120.00401 * 179.97438 * 24 23 21 26 26 O 1.21281 * 119.99857 * 0.02562 * 24 23 21 27 27 C 1.46931 * 118.73792 * 53.61250 * 20 19 18 28 28 C 1.53039 * 109.45758 * 300.02571 * 17 15 14 29 29 C 1.53095 * 109.41322 * 298.84118 * 15 14 13 30 30 H 0.97002 * 119.99852 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99783 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.52250 * 57.03438 * 12 10 9 33 33 H 1.08995 * 109.52240 * 296.84240 * 12 10 9 34 34 H 1.09003 * 109.48280 * 182.40752 * 13 12 10 35 35 H 1.09002 * 109.48971 * 62.37975 * 13 12 10 36 36 H 1.09002 * 109.45884 * 59.99666 * 17 15 14 37 37 H 1.08996 * 109.49379 * 301.32134 * 18 17 15 38 38 H 1.08994 * 109.49581 * 61.41903 * 18 17 15 39 39 H 1.08999 * 109.58991 * 185.56748 * 19 18 17 40 40 H 1.08998 * 109.59395 * 65.13869 * 19 18 17 41 41 H 1.09005 * 109.47033 * 300.00164 * 23 21 20 42 42 H 1.09001 * 109.47321 * 59.99201 * 23 21 20 43 43 H 0.96999 * 120.00123 * 359.97438 * 25 24 23 44 44 H 0.97000 * 120.00132 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.58425 * 186.61021 * 27 20 19 46 46 H 1.08999 * 109.58795 * 66.17471 * 27 20 19 47 47 H 1.08997 * 109.49901 * 298.57269 * 28 17 15 48 48 H 1.08992 * 109.50107 * 58.67848 * 28 17 15 49 49 H 1.08998 * 109.52426 * 177.51730 * 29 15 14 50 50 H 1.09000 * 109.51856 * 297.70008 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5675 -3.2063 0.5921 12 6 4.2588 -2.9779 -1.4380 13 6 5.0907 -4.2630 -1.4353 14 8 6.3621 -4.0047 -0.8363 15 6 6.2893 -3.5731 0.5240 16 1 5.7842 -4.3332 1.1200 17 6 7.7032 -3.3555 1.0667 18 6 7.6247 -2.8926 2.5233 19 6 9.0400 -2.6425 3.0527 20 7 9.8427 -3.8560 2.8479 21 6 10.5022 -4.4248 3.8764 22 8 11.1611 -5.4266 3.6944 23 6 10.4210 -3.8160 5.2526 24 6 11.2404 -4.6372 6.2143 25 7 11.3162 -4.2792 7.5115 26 8 11.8326 -5.6198 5.8210 27 6 9.9124 -4.4378 1.5005 28 6 8.4869 -4.6677 0.9884 29 6 5.5056 -2.2601 0.6001 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 4.7597 -2.2211 -2.0417 33 1 3.2726 -3.1832 -1.8542 34 1 5.2345 -4.6052 -2.4602 35 1 4.5698 -5.0322 -0.8651 36 1 8.2079 -2.5950 0.4707 37 1 7.0467 -1.9704 2.5813 38 1 7.1423 -3.6633 3.1244 39 1 8.9962 -2.4086 4.1164 40 1 9.4909 -1.8106 2.5118 41 1 10.8080 -2.7974 5.2227 42 1 9.3822 -3.8004 5.5823 43 1 10.8435 -3.4926 7.8259 44 1 11.8440 -4.8075 8.1304 45 1 10.4441 -5.3884 1.5401 46 1 10.4343 -3.7522 0.8329 47 1 7.9964 -5.4216 1.6041 48 1 8.5227 -5.0090 -0.0460 49 1 5.4110 -1.9521 1.6413 50 1 6.0317 -1.4889 0.0375 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075388952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:34 Heat of formation + Delta-G solvation = -141.863360 kcal Electronic energy + Delta-G solvation = -30277.971232 eV Core-core repulsion = 26110.742884 eV Total energy + Delta-G solvation = -4167.228348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56314 -40.72049 -39.76706 -38.13594 -36.86120 -34.89525 -34.49672 -34.12908 -32.68558 -31.69590 -31.08394 -30.58515 -27.05656 -25.67250 -24.56273 -23.83271 -23.31532 -22.14656 -21.37648 -21.13215 -19.91262 -19.57964 -18.55860 -18.15073 -17.25117 -17.11223 -16.86552 -16.76050 -16.55829 -16.48926 -15.78734 -15.48886 -15.43824 -15.28117 -14.85707 -14.76588 -14.71290 -14.45412 -14.38213 -14.09514 -13.94610 -13.63681 -13.26876 -13.06248 -12.94691 -12.93239 -12.60146 -12.40607 -12.15931 -12.11449 -11.91458 -11.85855 -11.80672 -11.51160 -11.42522 -11.06737 -11.01197 -10.90829 -10.56237 -10.50826 -10.40695 -9.58179 -9.31447 -8.01634 -5.35585 1.38457 1.42921 1.50300 1.64477 1.76932 1.91708 2.49634 2.74696 2.82610 3.29246 3.43005 3.44785 3.78836 3.82725 4.00248 4.02883 4.08272 4.19465 4.20948 4.25829 4.29550 4.38251 4.39817 4.41198 4.44756 4.54460 4.64009 4.68828 4.76935 4.82027 4.88288 4.91111 4.94448 5.02666 5.04010 5.15003 5.18614 5.27228 5.34595 5.46493 5.51881 5.65017 5.76871 5.97427 6.22122 6.35842 6.43557 6.57363 7.08370 7.25457 7.49408 7.84030 8.04258 9.19857 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.002350 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.018645 B =11910.187302 C =13119.402128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.957 3.043 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.244 1.244 7 C -0.229 4.229 8 H 0.053 0.947 9 N -0.749 5.749 10 C 0.172 3.828 11 H 0.039 0.961 12 C -0.166 4.166 13 C 0.072 3.928 14 O -0.386 6.386 15 C 0.103 3.897 16 H 0.054 0.946 17 C -0.070 4.070 18 C -0.132 4.132 19 C 0.105 3.895 20 N -0.611 5.611 21 C 0.503 3.497 22 O -0.562 6.562 23 C -0.158 4.158 24 C 0.507 3.493 25 N -0.837 5.837 26 O -0.571 6.571 27 C 0.114 3.886 28 C -0.115 4.115 29 C -0.144 4.144 30 H 0.257 0.743 31 H 0.366 0.634 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.420 0.580 44 H 0.406 0.594 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.692 -2.891 12.186 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.168 1.168 7 C -0.360 4.360 8 H 0.071 0.929 9 N -0.391 5.391 10 C 0.064 3.936 11 H 0.057 0.943 12 C -0.206 4.206 13 C -0.005 4.005 14 O -0.305 6.305 15 C 0.045 3.955 16 H 0.072 0.928 17 C -0.089 4.089 18 C -0.170 4.170 19 C -0.016 4.016 20 N -0.345 5.345 21 C 0.291 3.709 22 O -0.439 6.439 23 C -0.200 4.200 24 C 0.291 3.709 25 N -0.403 5.403 26 O -0.448 6.448 27 C -0.009 4.009 28 C -0.153 4.153 29 C -0.182 4.182 30 H 0.066 0.934 31 H 0.200 0.800 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.087 0.913 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.182 0.818 42 H 0.177 0.823 43 H 0.252 0.748 44 H 0.237 0.763 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.313 -4.114 11.592 27.247 hybrid contribution -0.801 0.967 0.030 1.256 sum 23.512 -3.147 11.622 26.416 Atomic orbital electron populations 1.69899 1.07253 1.26667 1.59791 1.25546 0.96133 1.01433 1.02734 0.85374 0.78895 0.79360 0.77930 1.20958 1.22394 1.16824 1.18992 0.82685 0.93234 1.41087 0.92927 1.42759 1.02330 1.03825 1.90234 1.20437 0.91907 0.87259 0.93968 0.94331 1.22755 0.99669 0.98544 0.99660 1.22532 0.83879 0.95042 0.99075 1.87839 1.28913 1.87237 1.26549 1.22112 0.96441 0.94013 0.82956 0.92779 1.21082 0.92810 0.97988 0.97007 1.22040 0.97590 1.03188 0.94227 1.22058 0.89580 0.85719 1.04254 1.48269 1.49107 1.28826 1.08306 1.20752 0.79004 0.83862 0.87264 1.90840 1.41954 1.26628 1.84522 1.21729 1.05273 1.02637 0.90363 1.20580 0.81206 0.84848 0.84272 1.43694 1.54370 1.33485 1.08738 1.90902 1.46710 1.29115 1.78081 1.21523 0.97142 0.99354 0.82838 1.21777 0.94489 0.97255 1.01801 1.22468 0.94480 0.98915 1.02380 0.93416 0.80044 0.92236 0.93201 0.87687 0.93128 0.89734 0.88668 0.91285 0.86079 0.89361 0.81843 0.82289 0.74786 0.76332 0.91461 0.90300 0.92782 0.90381 0.89480 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.29 13.97 21.65 0.30 -61.99 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 43.84 27.73 68.60 1.90 45.74 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.24 -9.72 6.52 99.48 0.65 -9.07 16 7 C -0.23 -12.68 10.41 84.03 0.88 -11.81 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 9 N -0.75 -33.14 4.94 -322.38 -1.59 -34.74 16 10 C 0.17 6.09 2.86 45.11 0.13 6.22 16 11 H 0.04 1.47 8.08 -2.39 -0.02 1.46 16 12 C -0.17 -5.47 5.72 30.68 0.18 -5.29 16 13 C 0.07 1.87 6.84 72.01 0.49 2.36 16 14 O -0.39 -9.78 9.71 -148.98 -1.45 -11.23 16 15 C 0.10 2.27 2.22 30.63 0.07 2.34 16 16 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 17 C -0.07 -1.15 1.95 -10.76 -0.02 -1.17 16 18 C -0.13 -1.51 5.04 30.66 0.15 -1.35 16 19 C 0.11 0.79 6.34 86.35 0.55 1.33 16 20 N -0.61 -9.24 2.97 -818.95 -2.43 -11.67 16 21 C 0.50 9.96 7.69 87.66 0.67 10.64 16 22 O -0.56 -18.36 13.59 20.40 0.28 -18.08 16 23 C -0.16 -1.35 4.53 29.10 0.13 -1.22 16 24 C 0.51 8.15 8.09 87.65 0.71 8.86 16 25 N -0.84 -4.93 8.87 -173.54 -1.54 -6.47 16 26 O -0.57 -17.49 15.02 20.41 0.31 -17.19 16 27 C 0.11 2.05 6.43 86.36 0.56 2.61 16 28 C -0.11 -2.05 5.23 30.67 0.16 -1.89 16 29 C -0.14 -3.71 4.47 30.68 0.14 -3.58 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 31 H 0.37 15.37 5.66 -92.71 -0.52 14.85 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 0.98 6.42 -2.39 -0.02 0.97 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.05 5.93 -2.39 -0.01 0.04 16 40 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.16 0.02 7.94 -2.38 -0.02 0.00 16 42 H 0.16 0.21 7.69 -2.39 -0.02 0.20 16 43 H 0.42 -1.04 8.83 -92.71 -0.82 -1.86 16 44 H 0.41 2.41 8.93 -92.71 -0.83 1.58 16 45 H 0.07 1.57 7.00 -2.39 -0.02 1.55 16 46 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 1.51 7.64 -2.39 -0.02 1.49 16 49 H 0.09 2.04 6.54 -2.39 -0.02 2.02 16 50 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -89.56 387.49 -0.22 -89.78 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -1.25 Total: 21.21 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.26 Total: 4.64 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -5.26 Total: -114.87 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.86 Total: -46.49 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.74 kcal Total: -89.56 -0.22 -89.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075388952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.085 kcal (2) G-P(sol) polarization free energy of solvation -89.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds