Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00228 * 2 1 4 4 H 1.48502 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47236 * 299.99589 * 3 2 1 6 6 H 1.48497 * 109.47378 * 59.99743 * 3 2 1 7 7 C 1.38810 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00265 * 157.65920 * 7 2 1 9 9 N 1.36937 * 120.00075 * 337.65660 * 7 2 1 10 10 C 1.46501 * 120.00217 * 326.15164 * 9 7 2 11 11 C 1.53006 * 109.46797 * 264.43355 * 10 9 7 12 12 O 1.42900 * 109.47033 * 65.00068 * 11 10 9 13 13 C 1.46507 * 120.00113 * 146.14507 * 9 7 2 14 14 C 1.53046 * 109.45522 * 60.00498 * 13 9 7 15 15 C 1.53193 * 109.30985 * 178.61554 * 14 13 9 16 16 N 1.46927 * 108.77673 * 54.63161 * 15 14 13 17 17 C 1.34780 * 120.62757 * 126.36272 * 16 15 14 18 18 O 1.21278 * 119.99986 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99853 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47425 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.42964 * 305.70486 * 20 19 17 22 22 C 1.54626 * 110.49050 * 183.16127 * 20 19 17 23 23 C 1.54827 * 101.60478 * 266.07899 * 22 20 19 24 24 N 1.46768 * 105.49473 * 334.56774 * 23 22 20 25 25 C 1.34418 * 111.29778 * 17.03513 * 24 23 22 26 26 O 1.21283 * 124.94049 * 179.56230 * 25 24 23 27 27 C 1.46928 * 118.74134 * 306.64775 * 16 15 14 28 28 C 1.52759 * 109.00738 * 53.30304 * 27 16 15 29 29 H 0.97002 * 120.00050 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46864 * 24.43154 * 10 9 7 31 31 H 1.08997 * 109.47082 * 144.43718 * 10 9 7 32 32 H 1.09000 * 109.46853 * 184.99835 * 11 10 9 33 33 H 1.08992 * 109.47274 * 305.00046 * 11 10 9 34 34 H 0.96702 * 114.00015 * 179.97438 * 12 11 10 35 35 H 1.08993 * 109.46255 * 179.97438 * 13 9 7 36 36 H 1.08999 * 109.49955 * 58.66125 * 14 13 9 37 37 H 1.09002 * 109.49620 * 298.56071 * 14 13 9 38 38 H 1.08992 * 109.58714 * 294.84617 * 15 14 13 39 39 H 1.08994 * 109.70124 * 174.48796 * 15 14 13 40 40 H 1.09001 * 109.46957 * 60.00282 * 19 17 16 41 41 H 1.09002 * 109.47249 * 300.00664 * 19 17 16 42 42 H 1.09001 * 110.96842 * 24.23867 * 22 20 19 43 43 H 1.09000 * 110.97179 * 147.99833 * 22 20 19 44 44 H 1.08997 * 110.22169 * 215.56462 * 23 22 20 45 45 H 1.09002 * 110.25547 * 93.57976 * 23 22 20 46 46 H 0.97002 * 124.34802 * 197.05880 * 24 23 22 47 47 H 1.08997 * 109.58735 * 173.14322 * 27 16 15 48 48 H 1.09000 * 109.57913 * 293.56857 * 27 16 15 49 49 H 1.09004 * 109.56234 * 185.55141 * 28 27 16 50 50 H 1.09000 * 109.38767 * 65.52263 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0293 -1.2375 -0.3550 9 7 1.4025 -2.3433 0.4519 10 6 0.4319 -2.2725 1.5469 11 6 1.1350 -2.5742 2.8719 12 8 2.0917 -1.5491 3.1477 13 6 1.7230 -3.6352 -0.1604 14 6 3.2173 -3.9213 0.0056 15 6 3.5422 -5.2882 -0.6051 16 7 3.0753 -5.3069 -1.9980 17 6 3.9148 -5.6373 -2.9993 18 8 5.0677 -5.9234 -2.7545 19 6 3.4210 -5.6514 -4.4230 20 6 4.5640 -6.0574 -5.3554 21 1 5.4286 -5.4116 -5.2010 22 6 4.1044 -6.0029 -6.8308 23 6 3.6625 -7.4667 -7.0735 24 7 4.4260 -8.2714 -6.1125 25 6 4.9390 -7.5061 -5.1337 26 8 5.6050 -7.9173 -4.2073 27 6 1.6774 -4.9524 -2.2794 28 6 1.3719 -3.5947 -1.6494 29 1 -0.4850 0.8401 -0.0004 30 1 -0.0009 -1.2728 1.5846 31 1 -0.3582 -3.0045 1.3800 32 1 0.3983 -2.6090 3.6745 33 1 1.6429 -3.5361 2.8029 34 1 2.5762 -1.6756 3.9750 35 1 1.1464 -4.4212 0.3272 36 1 3.4711 -3.9267 1.0656 37 1 3.7943 -3.1491 -0.5032 38 1 3.0363 -6.0706 -0.0396 39 1 4.6188 -5.4560 -0.5783 40 1 3.0661 -4.6571 -4.6943 41 1 2.6041 -6.3669 -4.5172 42 1 3.2677 -5.3152 -6.9535 43 1 4.9309 -5.7302 -7.4870 44 1 3.9024 -7.7686 -8.0930 45 1 2.5934 -7.5736 -6.8896 46 1 4.5454 -9.2319 -6.1758 47 1 1.5245 -4.8964 -3.3572 48 1 1.0163 -5.7070 -1.8532 49 1 0.3124 -3.3677 -1.7674 50 1 1.9659 -2.8252 -2.1425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098390915.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = -92.000562 kcal Electronic energy + Delta-G solvation = -31189.024928 eV Core-core repulsion = 27023.958793 eV Total energy + Delta-G solvation = -4165.066135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78913 -39.48893 -37.46962 -36.42396 -36.09621 -34.55500 -33.07770 -31.96514 -30.74055 -30.29295 -29.03860 -27.68456 -26.21919 -24.64919 -23.12451 -22.63751 -22.03563 -20.87308 -20.21687 -19.72935 -18.64201 -17.56459 -16.90546 -16.55903 -16.35551 -16.08040 -15.76154 -15.13304 -14.85233 -14.71797 -14.37622 -13.93472 -13.87505 -13.70841 -13.61691 -13.33131 -13.16982 -12.97274 -12.72502 -12.67177 -12.52370 -12.16757 -12.00790 -11.84686 -11.49748 -11.48095 -11.13644 -11.11528 -10.90847 -10.68024 -10.65086 -10.46057 -10.00433 -9.87206 -9.83150 -9.75761 -9.46109 -9.33875 -9.26367 -9.05995 -8.35179 -8.24837 -6.53503 -5.69714 -3.19587 2.59416 2.93298 3.19996 3.26617 3.45116 3.53585 3.57859 4.15942 4.17895 4.45569 4.58132 4.65105 4.84157 5.00248 5.12792 5.16734 5.18817 5.23086 5.30370 5.40614 5.47649 5.54962 5.56087 5.58777 5.60400 5.78333 5.81733 5.87486 6.00509 6.06339 6.10834 6.21034 6.32575 6.43013 6.52689 6.65635 6.69185 6.73866 6.82688 6.86872 6.91514 7.14029 7.19410 7.72000 7.73300 7.92334 8.24884 8.47328 8.50188 8.64944 9.27457 9.92941 10.45627 11.33080 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.002870 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.712355 B = 9754.618637 C =10435.744073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.012 3.988 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.057 0.943 9 N -0.572 5.572 10 C 0.141 3.859 11 C 0.059 3.941 12 O -0.544 6.544 13 C 0.177 3.823 14 C -0.138 4.138 15 C 0.116 3.884 16 N -0.607 5.607 17 C 0.503 3.497 18 O -0.520 6.520 19 C -0.123 4.123 20 C -0.109 4.109 21 H 0.113 0.887 22 C -0.132 4.132 23 C 0.101 3.899 24 N -0.743 5.743 25 C 0.518 3.482 26 O -0.498 6.498 27 C 0.108 3.892 28 C -0.136 4.136 29 H 0.250 0.750 30 H 0.108 0.892 31 H 0.034 0.966 32 H 0.019 0.981 33 H 0.021 0.979 34 H 0.349 0.651 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.407 0.593 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 -13.980 -11.434 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.187 4.187 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.075 0.925 9 N -0.291 5.291 10 C 0.014 3.986 11 C -0.021 4.021 12 O -0.345 6.345 13 C 0.070 3.930 14 C -0.178 4.178 15 C -0.007 4.007 16 N -0.342 5.342 17 C 0.290 3.710 18 O -0.396 6.396 19 C -0.164 4.164 20 C -0.132 4.132 21 H 0.131 0.869 22 C -0.170 4.170 23 C -0.023 4.023 24 N -0.401 5.401 25 C 0.303 3.697 26 O -0.370 6.370 27 C -0.016 4.016 28 C -0.176 4.176 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.192 0.808 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.245 0.755 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.530 -13.842 -11.357 17.970 hybrid contribution 0.404 0.271 0.571 0.750 sum 1.934 -13.571 -10.786 17.443 Atomic orbital electron populations 1.69969 1.05483 1.25241 1.53307 1.24919 0.94879 0.98341 1.00517 0.86341 0.79827 0.84353 0.76820 1.20377 1.22298 1.21686 1.18835 0.94085 0.85571 1.37373 0.92495 1.43765 1.48714 1.01779 1.34822 1.21068 0.90032 1.04009 0.83485 1.23097 0.90411 0.89358 0.99256 1.86849 1.55521 1.49075 1.43083 1.20304 0.92471 0.88956 0.91312 1.22347 0.99995 0.95122 1.00319 1.21619 1.00670 0.97970 0.80452 1.48116 1.11349 1.67638 1.07082 1.20460 0.86050 0.77534 0.87001 1.90794 1.17403 1.47222 1.84156 1.21565 0.98148 1.04287 0.92370 1.21733 1.00480 0.96038 0.94901 0.86914 1.22778 1.02834 0.96168 0.95187 1.22089 0.96026 0.91114 0.93104 1.46294 1.55207 1.10601 1.28012 1.20758 0.78758 0.88857 0.81318 1.90824 1.37094 1.78144 1.30915 1.21787 0.81284 0.98122 1.00370 1.22240 1.02293 0.94451 0.98575 0.93967 0.87424 0.94734 0.96334 0.96063 0.80802 0.93614 0.91645 0.91381 0.92504 0.89775 0.87481 0.89017 0.88716 0.89631 0.90444 0.91153 0.75511 0.90728 0.92110 0.90947 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 11.34 55.49 0.63 -24.58 16 2 C 0.01 0.32 4.91 -17.43 -0.09 0.24 16 3 Si 0.90 22.27 29.61 -169.99 -5.03 17.23 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.23 -6.04 8.06 -15.06 -0.12 -6.16 16 8 H 0.06 1.56 6.86 -52.49 -0.36 1.20 16 9 N -0.57 -13.31 2.35 -165.61 -0.39 -13.70 16 10 C 0.14 3.19 5.57 -4.04 -0.02 3.16 16 11 C 0.06 1.15 7.39 37.16 0.27 1.43 16 12 O -0.54 -11.42 13.40 -35.23 -0.47 -11.89 16 13 C 0.18 3.40 2.60 -67.88 -0.18 3.23 16 14 C -0.14 -2.53 5.30 -26.61 -0.14 -2.67 16 15 C 0.12 1.89 6.44 -3.71 -0.02 1.86 16 16 N -0.61 -9.34 2.98 -173.03 -0.52 -9.86 16 17 C 0.50 7.92 7.49 -10.98 -0.08 7.84 16 18 O -0.52 -10.29 13.24 -15.98 -0.21 -10.50 16 19 C -0.12 -1.33 3.45 -27.88 -0.10 -1.43 16 20 C -0.11 -1.15 2.54 -90.64 -0.23 -1.38 16 21 H 0.11 1.36 7.96 -51.93 -0.41 0.95 16 22 C -0.13 -0.78 6.73 -24.91 -0.17 -0.95 16 23 C 0.10 0.54 7.79 -2.93 -0.02 0.51 16 24 N -0.74 -6.41 6.24 -59.01 -0.37 -6.78 16 25 C 0.52 6.79 7.42 -10.86 -0.08 6.71 16 26 O -0.50 -9.22 16.03 -15.99 -0.26 -9.48 16 27 C 0.11 1.45 6.31 -3.93 -0.02 1.42 16 28 C -0.14 -2.37 5.29 -26.84 -0.14 -2.52 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.11 2.86 5.34 -51.93 -0.28 2.58 16 31 H 0.03 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 5.37 9.12 45.56 0.42 5.79 16 35 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.42 7.03 -51.93 -0.37 1.06 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.48 7.00 -51.93 -0.36 1.12 16 40 H 0.11 0.96 7.67 -51.93 -0.40 0.56 16 41 H 0.09 0.82 7.95 -51.93 -0.41 0.41 16 42 H 0.09 0.40 7.90 -51.93 -0.41 -0.01 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.41 2.95 8.96 -40.82 -0.37 2.58 16 47 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.07 1.44 7.71 -51.93 -0.40 1.04 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -36.32 390.75 -9.30 -45.62 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.43 Total: 6.74 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -1.14 Total: 11.30 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.64 Total: -54.91 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.94 Total: -31.86 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.32 -9.30 -45.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098390915.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.379 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds