Wall clock time and date at job start Sat Apr 11 2020 05:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47043 * 299.99887 * 3 2 1 6 6 H 1.48498 * 109.47247 * 60.00205 * 3 2 1 7 7 C 1.38805 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00305 * 160.32777 * 7 2 1 9 9 N 1.36943 * 119.99946 * 340.32641 * 7 2 1 10 10 C 1.46499 * 119.99636 * 320.99965 * 9 7 2 11 11 C 1.52996 * 109.46759 * 264.40659 * 10 9 7 12 12 O 1.42900 * 109.47033 * 65.00771 * 11 10 9 13 13 C 1.46497 * 119.99924 * 140.99553 * 9 7 2 14 14 C 1.53040 * 109.46249 * 60.00222 * 13 9 7 15 15 C 1.53188 * 109.34141 * 178.62911 * 14 13 9 16 16 N 1.46928 * 108.77474 * 54.62048 * 15 14 13 17 17 C 1.34775 * 120.63255 * 126.36946 * 16 15 14 18 18 O 1.21279 * 120.00168 * 174.44767 * 17 16 15 19 19 C 1.50705 * 119.99750 * 354.45381 * 17 16 15 20 20 H 1.09001 * 109.60282 * 315.01062 * 19 17 16 21 21 C 1.53343 * 109.60184 * 194.68481 * 19 17 16 22 22 C 1.53069 * 108.42721 * 172.71173 * 21 19 17 23 23 C 1.50177 * 109.88952 * 48.89788 * 22 21 19 24 24 O 1.21278 * 118.24550 * 162.39496 * 23 22 21 25 25 N 1.33354 * 123.50886 * 342.42716 * 23 22 21 26 26 C 1.45816 * 124.17019 * 2.03358 * 25 23 22 27 27 C 1.46928 * 118.73606 * 306.39140 * 16 15 14 28 28 C 1.53043 * 109.48877 * 299.91544 * 13 9 7 29 29 H 0.96999 * 120.00036 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47364 * 24.41228 * 10 9 7 31 31 H 1.09007 * 109.47100 * 144.41582 * 10 9 7 32 32 H 1.09001 * 109.47220 * 184.99949 * 11 10 9 33 33 H 1.09000 * 109.47920 * 305.00613 * 11 10 9 34 34 H 0.96702 * 114.00008 * 179.97438 * 12 11 10 35 35 H 1.09004 * 109.44661 * 179.97438 * 13 9 7 36 36 H 1.09002 * 109.49648 * 58.65791 * 14 13 9 37 37 H 1.09000 * 109.49883 * 298.59921 * 14 13 9 38 38 H 1.09006 * 109.58620 * 174.40462 * 15 14 13 39 39 H 1.09000 * 109.58505 * 294.83298 * 15 14 13 40 40 H 1.08999 * 109.67854 * 292.44893 * 21 19 17 41 41 H 1.09001 * 109.67416 * 52.94203 * 21 19 17 42 42 H 1.08994 * 109.40369 * 169.03104 * 22 21 19 43 43 H 1.09004 * 109.40031 * 288.85719 * 22 21 19 44 44 H 0.96999 * 117.94366 * 182.22444 * 25 23 22 45 45 H 1.09000 * 109.46143 * 220.86962 * 26 25 23 46 46 H 1.09001 * 109.17968 * 101.46247 * 26 25 23 47 47 H 1.09000 * 109.58254 * 173.39768 * 27 16 15 48 48 H 1.08996 * 109.58552 * 293.81820 * 27 16 15 49 49 H 1.09005 * 109.46681 * 61.40108 * 28 13 9 50 50 H 1.09000 * 109.52232 * 301.33977 * 28 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0430 -1.2292 -0.3154 9 7 1.3855 -2.3536 0.3982 10 6 0.4552 -2.3281 1.5296 11 6 1.1938 -2.7346 2.8063 12 8 2.1888 -1.7560 3.1131 13 6 1.6475 -3.6109 -0.3066 14 6 3.1376 -3.9470 -0.2130 15 6 3.4026 -5.2792 -0.9214 16 7 2.8883 -5.1948 -2.2951 17 6 3.6835 -5.4812 -3.3449 18 8 3.2220 -5.5061 -4.4662 19 6 5.1461 -5.7707 -3.1254 20 1 5.5645 -5.0375 -2.4358 21 6 5.8908 -5.7014 -4.4641 22 6 7.3921 -5.8169 -4.1891 23 6 7.6567 -6.9812 -3.2782 24 8 8.7872 -7.4158 -3.2158 25 7 6.7148 -7.5632 -2.5349 26 6 5.3093 -7.1750 -2.5424 27 6 1.4907 -4.7918 -2.5026 28 6 1.2471 -3.4652 -1.7765 29 1 -0.4850 0.8400 0.0004 30 1 0.0534 -1.3218 1.6470 31 1 -0.3613 -3.0261 1.3444 32 1 0.4841 -2.8019 3.6309 33 1 1.6707 -3.7034 2.6575 34 1 2.6973 -1.9493 3.9126 35 1 1.0652 -4.4111 0.1502 36 1 3.4271 -4.0282 0.8347 37 1 3.7191 -3.1588 -0.6911 38 1 4.4749 -5.4740 -0.9440 39 1 2.8941 -6.0833 -0.3895 40 1 5.5708 -6.5230 -5.1050 41 1 5.6788 -4.7507 -4.9532 42 1 7.9222 -5.9654 -5.1298 43 1 7.7450 -4.9008 -3.7154 44 1 6.9818 -8.2894 -1.9498 45 1 4.9232 -7.1890 -1.5232 46 1 4.7452 -7.8843 -3.1481 47 1 1.3014 -4.6651 -3.5685 48 1 0.8263 -5.5562 -2.0998 49 1 1.8460 -2.6813 -2.2402 50 1 0.1911 -3.2031 -1.8421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098416841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:01 Heat of formation + Delta-G solvation = -126.366087 kcal Electronic energy + Delta-G solvation = -31388.656430 eV Core-core repulsion = 27222.100094 eV Total energy + Delta-G solvation = -4166.556336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88178 -40.71403 -39.12109 -37.66991 -37.27726 -36.20679 -34.03112 -33.78385 -32.48852 -31.84780 -30.70038 -29.33612 -26.67791 -25.76215 -24.97352 -24.38821 -23.56991 -22.29426 -21.59685 -20.51632 -19.74831 -18.75609 -18.15088 -18.07410 -17.83849 -17.17419 -16.89230 -16.67309 -16.20594 -16.12733 -16.03643 -15.57246 -15.15597 -15.10569 -14.93925 -14.79344 -14.46409 -14.37661 -14.21507 -13.96636 -13.60774 -13.24815 -13.11821 -12.97757 -12.95933 -12.83459 -12.73063 -12.56358 -12.34690 -12.22481 -12.09339 -11.92890 -11.79059 -11.58388 -11.44068 -11.08595 -10.86024 -10.79815 -10.57709 -10.38004 -10.13829 -9.59508 -8.40130 -7.72675 -5.30628 1.43110 1.47801 1.51829 1.54544 1.60115 1.97252 2.31806 2.56690 3.32542 3.38660 3.53417 3.58512 3.65894 3.69976 3.87321 3.93782 4.12603 4.22121 4.24100 4.28302 4.38048 4.42771 4.48681 4.52870 4.61822 4.66043 4.71507 4.76212 4.81568 4.86602 4.89430 4.92766 4.97426 5.01296 5.13687 5.15487 5.18326 5.28002 5.51269 5.66502 5.70637 5.78282 5.80449 5.86845 6.24346 6.46253 6.58583 7.14688 7.16921 7.25110 7.32696 8.01109 8.49879 9.24570 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003037 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.329250 B = 9216.525187 C = 9309.815740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.034 4.034 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.297 1.297 7 C -0.217 4.217 8 H 0.044 0.956 9 N -0.585 5.585 10 C 0.141 3.859 11 C 0.069 3.931 12 O -0.577 6.577 13 C 0.172 3.828 14 C -0.131 4.131 15 C 0.109 3.891 16 N -0.602 5.602 17 C 0.523 3.477 18 O -0.579 6.579 19 C -0.122 4.122 20 H 0.118 0.882 21 C -0.099 4.099 22 C -0.129 4.129 23 C 0.518 3.482 24 O -0.605 6.605 25 N -0.705 5.705 26 C 0.123 3.877 27 C 0.124 3.876 28 C -0.122 4.122 29 H 0.244 0.756 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.375 0.625 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.410 0.590 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.087 0.913 49 H 0.031 0.969 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -16.959 0.615 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.230 4.230 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.224 1.224 7 C -0.348 4.348 8 H 0.062 0.938 9 N -0.304 5.304 10 C 0.015 3.985 11 C -0.011 4.011 12 O -0.382 6.382 13 C 0.066 3.934 14 C -0.171 4.171 15 C -0.013 4.013 16 N -0.333 5.333 17 C 0.311 3.689 18 O -0.458 6.458 19 C -0.144 4.144 20 H 0.136 0.864 21 C -0.137 4.137 22 C -0.169 4.169 23 C 0.307 3.693 24 O -0.487 6.487 25 N -0.357 5.357 26 C -0.001 4.001 27 C 0.001 3.999 28 C -0.162 4.162 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.221 0.779 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.247 0.753 45 H 0.133 0.867 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.050 0.950 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.611 -16.606 -0.617 18.277 hybrid contribution 0.138 1.246 0.690 1.431 sum 7.749 -15.360 0.073 17.204 Atomic orbital electron populations 1.70090 1.06379 1.25062 1.55280 1.25582 0.95452 1.00653 1.01318 0.85655 0.79134 0.82101 0.76142 1.19733 1.22658 1.22408 1.18793 0.92331 0.86177 1.37486 0.93803 1.43877 1.50812 1.04232 1.31509 1.20904 0.90860 1.01141 0.85604 1.22879 0.90170 0.90626 0.97402 1.86769 1.52586 1.50211 1.48661 1.20547 0.94518 0.88126 0.90249 1.22198 0.97830 0.96486 1.00563 1.22130 1.01196 0.97816 0.80155 1.48235 1.11853 1.65996 1.07250 1.20624 0.88373 0.76025 0.83835 1.90685 1.76533 1.53898 1.24720 1.21643 0.91738 1.00093 1.00884 0.86377 1.21424 0.92533 1.04312 0.95394 1.21672 0.97480 0.97124 1.00627 1.20549 0.83919 0.84565 0.80300 1.90751 1.23651 1.65667 1.68679 1.45353 1.08370 1.37878 1.44061 1.21482 0.81379 0.93384 1.03870 1.21530 0.81895 0.95845 1.00669 1.22117 1.00133 0.95849 0.98120 0.94702 0.92673 0.93636 0.93966 0.93507 0.77876 0.91352 0.90675 0.94164 0.87372 0.88146 0.90696 0.90377 0.87033 0.86728 0.75328 0.86676 0.90308 0.91214 0.89449 0.94964 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 11.55 21.65 0.25 -53.04 16 2 C -0.03 -1.87 4.93 84.86 0.42 -1.45 16 3 Si 0.94 45.78 29.60 68.60 2.03 47.81 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 7 C -0.22 -11.18 8.01 84.03 0.67 -10.51 16 8 H 0.04 2.34 6.90 -2.91 -0.02 2.32 16 9 N -0.58 -25.72 2.31 -677.89 -1.57 -27.28 16 10 C 0.14 6.03 5.55 86.38 0.48 6.51 16 11 C 0.07 2.31 7.39 71.98 0.53 2.84 16 12 O -0.58 -21.44 13.40 -148.98 -2.00 -23.43 16 13 C 0.17 5.83 2.59 45.02 0.12 5.95 16 14 C -0.13 -3.56 5.30 30.67 0.16 -3.40 16 15 C 0.11 1.88 5.54 86.36 0.48 2.35 16 16 N -0.60 -13.67 2.97 -818.92 -2.43 -16.10 16 17 C 0.52 12.26 6.91 87.66 0.61 12.86 16 18 O -0.58 -18.21 15.55 -3.03 -0.05 -18.25 16 19 C -0.12 -1.93 1.71 -11.45 -0.02 -1.95 16 20 H 0.12 1.66 7.11 -2.39 -0.02 1.64 16 21 C -0.10 -1.65 4.64 30.73 0.14 -1.50 16 22 C -0.13 -1.99 6.03 29.71 0.18 -1.81 16 23 C 0.52 10.00 7.71 87.71 0.68 10.67 16 24 O -0.60 -17.03 17.78 -3.02 -0.05 -17.09 16 25 N -0.71 -9.31 5.45 -467.18 -2.55 -11.86 16 26 C 0.12 1.32 6.17 86.48 0.53 1.85 16 27 C 0.12 3.37 6.42 86.36 0.55 3.93 16 28 C -0.12 -4.36 5.31 30.67 0.16 -4.20 16 29 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 30 H 0.06 2.90 5.64 -2.39 -0.01 2.88 16 31 H 0.05 1.80 8.04 -2.38 -0.02 1.78 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.37 9.42 9.12 -74.06 -0.68 8.74 16 35 H 0.07 2.03 7.87 -2.38 -0.02 2.01 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.34 7.07 -2.39 -0.02 1.32 16 38 H 0.11 1.26 4.59 -2.38 -0.01 1.25 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 41 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 42 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.41 4.41 8.80 -92.71 -0.82 3.59 16 45 H 0.12 0.65 6.20 -2.39 -0.01 0.64 16 46 H 0.08 0.86 8.11 -2.39 -0.02 0.84 16 47 H 0.07 2.14 7.04 -2.39 -0.02 2.13 16 48 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.03 1.37 7.71 -2.38 -0.02 1.36 16 50 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -76.98 388.05 -1.19 -78.17 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.52 Total: 18.91 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 5.69 Total: 22.16 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -6.29 Total: -108.28 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -2.10 Total: -58.77 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -76.98 -1.19 -78.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098416841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.200 kcal (2) G-P(sol) polarization free energy of solvation -76.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds