Wall clock time and date at job start Sat Apr 11 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 119.99792 * 2 1 4 4 H 1.48497 * 109.47120 * 240.00036 * 3 2 1 5 5 H 1.48501 * 109.46951 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00185 * 3 2 1 7 7 C 1.38948 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00401 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00337 * 179.97438 * 9 7 2 11 11 O 1.21300 * 119.99658 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00172 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47041 * 180.02562 * 12 10 9 14 14 C 1.46850 * 111.00144 * 293.95719 * 13 12 10 15 15 C 1.53035 * 109.52413 * 174.16203 * 14 13 12 16 16 C 1.53111 * 109.28083 * 59.17595 * 15 14 13 17 17 H 1.09006 * 109.52313 * 62.31474 * 16 15 14 18 18 N 1.46496 * 109.52493 * 182.44016 * 16 15 14 19 19 C 1.34777 * 120.00271 * 275.00431 * 18 16 15 20 20 O 1.21278 * 119.99854 * 359.97438 * 19 18 16 21 21 C 1.50703 * 120.00161 * 179.97438 * 19 18 16 22 22 C 1.53000 * 109.46912 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47060 * 179.97438 * 22 21 19 24 24 C 1.52998 * 117.50310 * 243.74949 * 23 22 21 25 25 C 1.52996 * 117.50163 * 175.08923 * 23 22 21 26 26 C 1.53122 * 109.16175 * 302.34982 * 16 15 14 27 27 H 1.09004 * 109.49687 * 297.70711 * 26 16 15 28 28 O 1.42904 * 109.50511 * 177.59626 * 26 16 15 29 29 C 1.46848 * 111.00157 * 169.74665 * 13 12 10 30 30 H 0.97000 * 119.99734 * 359.97438 * 1 2 3 31 31 H 0.97002 * 120.00413 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.46730 * 60.00506 * 12 10 9 33 33 H 1.08992 * 109.47051 * 300.00117 * 12 10 9 34 34 H 1.09001 * 109.46159 * 54.13974 * 14 13 12 35 35 H 1.09003 * 109.46157 * 294.17733 * 14 13 12 36 36 H 1.08999 * 109.49965 * 299.23370 * 15 14 13 37 37 H 1.08999 * 109.50163 * 179.11974 * 15 14 13 38 38 H 0.97005 * 120.00266 * 94.99848 * 18 16 15 39 39 H 1.09001 * 109.46980 * 59.99654 * 21 19 18 40 40 H 1.08992 * 109.47158 * 299.99760 * 21 19 18 41 41 H 1.09002 * 109.47398 * 300.00078 * 22 21 19 42 42 H 1.09001 * 109.47194 * 60.00258 * 22 21 19 43 43 H 1.09008 * 115.55245 * 29.41643 * 23 22 21 44 44 H 1.09000 * 117.49561 * 359.97438 * 24 23 22 45 45 H 1.09000 * 117.50593 * 145.01245 * 24 23 22 46 46 H 1.09004 * 117.49898 * 214.97822 * 25 23 22 47 47 H 1.09005 * 117.49813 * 359.97438 * 25 23 22 48 48 H 0.96695 * 113.99955 * 179.97438 * 28 26 16 49 49 H 1.09006 * 109.45502 * 305.85338 * 29 13 12 50 50 H 1.08995 * 109.45908 * 65.82337 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2104 -3.5578 -0.0031 12 6 1.2439 -4.8629 -0.0032 13 7 2.1985 -5.9795 -0.0037 14 6 2.9637 -6.0172 -1.2566 15 6 4.0438 -7.0973 -1.1639 16 6 3.3817 -8.4538 -0.9074 17 1 2.7328 -8.7068 -1.7459 18 7 4.4142 -9.4825 -0.7597 19 6 4.9264 -10.0848 -1.8512 20 8 4.5322 -9.7755 -2.9556 21 6 5.9890 -11.1427 -1.6993 22 6 6.3938 -11.6608 -3.0808 23 6 7.4730 -12.7343 -2.9267 24 6 8.8521 -12.4402 -3.5204 25 6 7.9314 -13.4621 -4.1920 26 6 2.5521 -8.3733 0.3771 27 1 3.2081 -8.1593 1.2210 28 8 1.8859 -9.6188 0.5937 29 6 1.5152 -7.2563 0.2397 30 1 -0.4850 0.8401 0.0004 31 1 0.3535 -2.3907 -0.0016 32 1 0.6170 -4.9201 -0.8930 33 1 0.6176 -4.9213 0.8869 34 1 3.4327 -5.0478 -1.4249 35 1 2.2928 -6.2446 -2.0851 36 1 4.7231 -6.8631 -0.3443 37 1 4.6014 -7.1356 -2.0997 38 1 4.7294 -9.7301 0.1236 39 1 5.5984 -11.9669 -1.1025 40 1 6.8593 -10.7146 -1.2021 41 1 5.5233 -12.0890 -3.5778 42 1 6.7843 -10.8367 -3.6779 43 1 7.4359 -13.3090 -2.0011 44 1 8.9904 -11.4820 -4.0213 45 1 9.7221 -12.8214 -2.9858 46 1 8.1961 -14.5154 -4.0988 47 1 7.4638 -13.1764 -5.1343 48 1 1.3410 -9.6397 1.3922 49 1 0.9324 -7.1868 1.1583 50 1 0.8512 -7.4779 -0.5958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099751002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:20 Heat of formation + Delta-G solvation = -102.367826 kcal Electronic energy + Delta-G solvation = -29350.449725 eV Core-core repulsion = 25184.934032 eV Total energy + Delta-G solvation = -4165.515693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34056 -39.15544 -38.06024 -37.66853 -36.05559 -34.80523 -33.86276 -32.66511 -31.46071 -31.03043 -29.65348 -27.34631 -25.43351 -24.33281 -23.17563 -22.71327 -22.43876 -20.75255 -20.49297 -19.93059 -19.23760 -17.92179 -17.37857 -17.18663 -16.61365 -16.09160 -16.03823 -15.56907 -15.13565 -14.94461 -14.71855 -14.46981 -14.14789 -14.02090 -13.84058 -13.75921 -13.41010 -13.36821 -12.93869 -12.69244 -12.42185 -12.40445 -11.96617 -11.90268 -11.65649 -11.56792 -11.50744 -11.38098 -11.27201 -11.09222 -10.78345 -10.65012 -10.54870 -10.44830 -10.28565 -10.22408 -10.21034 -9.80903 -9.48642 -9.10040 -8.48490 -8.00799 -7.90971 -6.42906 -3.83811 2.57413 3.01209 3.19202 3.25177 3.29260 3.46187 3.69241 3.88229 4.07250 4.23538 4.31390 4.49044 4.60197 4.61865 4.66568 4.87080 4.89980 4.99263 5.01304 5.04867 5.16490 5.23606 5.25813 5.30853 5.34452 5.37959 5.50323 5.57246 5.60567 5.66431 5.68783 5.74793 5.77065 5.81658 5.82564 5.90507 6.02450 6.06126 6.23121 6.29435 6.41029 6.49242 7.17801 7.23085 7.40790 7.46291 7.53902 8.04582 8.15363 8.60094 9.16598 9.52682 10.04261 10.74646 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.001889 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.235635 B =14817.882522 C =15947.705478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.047 3.953 13 N -0.512 5.512 14 C 0.052 3.948 15 C -0.119 4.119 16 C 0.154 3.846 17 H 0.089 0.911 18 N -0.719 5.719 19 C 0.512 3.488 20 O -0.543 6.543 21 C -0.137 4.137 22 C -0.074 4.074 23 C -0.154 4.154 24 C -0.182 4.182 25 C -0.182 4.182 26 C 0.103 3.897 27 H 0.072 0.928 28 O -0.563 6.563 29 C 0.027 3.973 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.400 0.600 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.379 0.621 49 H 0.080 0.920 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.650 -24.718 -0.201 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.462 6.462 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.076 4.076 15 C -0.158 4.158 16 C 0.049 3.951 17 H 0.107 0.893 18 N -0.369 5.369 19 C 0.299 3.701 20 O -0.420 6.420 21 C -0.177 4.177 22 C -0.111 4.111 23 C -0.173 4.173 24 C -0.219 4.219 25 C -0.219 4.219 26 C 0.043 3.957 27 H 0.089 0.911 28 O -0.368 6.368 29 C -0.103 4.103 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.045 0.955 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.226 0.774 49 H 0.099 0.901 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.677 -24.416 -1.181 25.939 hybrid contribution -1.059 0.800 0.449 1.401 sum 7.619 -23.616 -0.732 24.825 Atomic orbital electron populations 1.69604 1.05934 1.28274 1.50463 1.25259 0.95628 0.99717 0.97279 0.85919 0.78762 0.80471 0.79067 1.19913 1.20987 1.19904 1.19648 0.93341 0.82195 1.47745 0.87936 1.41857 1.09193 1.04572 1.64322 1.19697 0.88407 0.84495 0.84567 1.90488 1.13639 1.86851 1.55181 1.21840 0.93853 0.91077 1.01664 1.61500 1.25175 1.00944 1.36155 1.22279 0.95048 1.01533 0.88724 1.21905 0.98667 0.92150 1.03044 1.21051 0.88650 0.87981 0.97386 0.89257 1.45953 1.41216 1.40418 1.09305 1.20711 0.82778 0.82227 0.84396 1.90709 1.61135 1.64611 1.25497 1.21646 0.98020 0.97866 1.00121 1.20916 0.97630 0.97008 0.95595 1.22359 0.95851 1.01310 0.97742 1.23071 0.93731 1.00793 1.04293 1.22973 1.04234 0.97656 0.96991 1.22016 0.93076 0.83120 0.97460 0.91053 1.86546 1.66797 1.34278 1.49207 1.22752 0.95763 0.90042 1.01712 0.91816 0.77489 0.93269 0.89279 0.87150 0.95501 0.90425 0.90536 0.76634 0.88926 0.88795 0.90815 0.90962 0.87775 0.88672 0.88948 0.88915 0.88705 0.77385 0.90134 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 10 C 0.44 10.20 7.46 -10.98 -0.08 10.12 16 11 O -0.58 -15.11 13.92 5.54 0.08 -15.03 16 12 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 13 N -0.51 -8.16 4.39 -236.12 -1.04 -9.19 16 14 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 15 C -0.12 -1.68 5.67 -26.66 -0.15 -1.83 16 16 C 0.15 1.93 2.20 -67.81 -0.15 1.78 16 17 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 18 N -0.72 -7.51 5.00 -53.69 -0.27 -7.78 16 19 C 0.51 5.92 7.80 -10.98 -0.09 5.83 16 20 O -0.54 -8.53 15.65 5.56 0.09 -8.44 16 21 C -0.14 -1.05 5.66 -27.88 -0.16 -1.21 16 22 C -0.07 -0.63 4.79 -26.73 -0.13 -0.75 16 23 C -0.15 -1.06 5.73 -90.62 -0.52 -1.58 16 24 C -0.18 -1.21 10.18 -26.70 -0.27 -1.48 16 25 C -0.18 -1.21 10.25 -26.70 -0.27 -1.49 16 26 C 0.10 1.12 3.13 -26.65 -0.08 1.04 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 O -0.56 -5.45 13.23 -35.23 -0.47 -5.92 16 29 C 0.03 0.32 5.08 -3.84 -0.02 0.31 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 32 H 0.05 0.80 8.12 -51.93 -0.42 0.37 16 33 H 0.09 1.37 7.98 -51.93 -0.41 0.95 16 34 H 0.11 2.19 5.80 -51.93 -0.30 1.89 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.40 3.13 8.60 -40.82 -0.35 2.78 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 42 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 43 H 0.10 0.61 8.08 -51.92 -0.42 0.19 16 44 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.38 2.09 9.08 45.56 0.41 2.50 16 49 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 50 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 407.10 15.07 6.13 6.13 Total: -1.00 -33.50 407.10 -9.65 -43.14 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -7.61 Total: 14.39 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.21 Total: 4.47 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.64 Total: -54.64 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.30 Total: -29.39 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.50 -9.65 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099751002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.223 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds