Wall clock time and date at job start Sat Apr 11 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86805 * 119.99823 * 2 1 4 4 H 1.48493 * 109.46901 * 239.99887 * 3 2 1 5 5 H 1.48490 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46651 * 120.00056 * 3 2 1 7 7 C 1.38949 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99832 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00250 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99979 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99908 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47044 * 180.02562 * 12 10 9 14 14 C 1.46842 * 111.00366 * 66.04547 * 13 12 10 15 15 C 1.53027 * 109.52728 * 174.16062 * 14 13 12 16 16 C 1.53121 * 109.28037 * 59.18010 * 15 14 13 17 17 H 1.09003 * 109.52333 * 62.31009 * 16 15 14 18 18 N 1.46497 * 109.52641 * 182.44438 * 16 15 14 19 19 C 1.34777 * 119.99525 * 274.86929 * 18 16 15 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 16 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 C 1.52997 * 109.47000 * 179.97438 * 22 21 19 24 24 C 1.53000 * 117.50121 * 243.61780 * 23 22 21 25 25 C 1.53000 * 60.00410 * 252.51617 * 24 23 22 26 26 C 1.53127 * 109.21044 * 302.38234 * 16 15 14 27 27 H 1.08997 * 109.49938 * 177.56157 * 26 16 15 28 28 O 1.42897 * 109.49986 * 297.67675 * 26 16 15 29 29 C 1.46854 * 110.99807 * 301.83407 * 13 12 10 30 30 H 0.96994 * 119.99708 * 0.02562 * 1 2 3 31 31 H 0.97010 * 119.99452 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46849 * 60.00088 * 12 10 9 33 33 H 1.08998 * 109.47238 * 300.00011 * 12 10 9 34 34 H 1.09001 * 109.46054 * 54.14194 * 14 13 12 35 35 H 1.09000 * 109.45435 * 294.17402 * 14 13 12 36 36 H 1.09003 * 109.50604 * 299.24454 * 15 14 13 37 37 H 1.08997 * 109.51033 * 179.11920 * 15 14 13 38 38 H 0.97000 * 120.00580 * 94.87675 * 18 16 15 39 39 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 40 40 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 41 41 H 1.09000 * 109.46887 * 300.00372 * 22 21 19 42 42 H 1.08998 * 109.46846 * 59.99549 * 22 21 19 43 43 H 1.08997 * 115.55023 * 29.33489 * 23 22 21 44 44 H 1.09002 * 117.49755 * 0.02562 * 24 23 22 45 45 H 1.08992 * 117.49871 * 145.02266 * 24 23 22 46 46 H 1.08997 * 117.49969 * 252.51513 * 25 24 23 47 47 H 1.08998 * 117.50184 * 107.48839 * 25 24 23 48 48 H 0.96702 * 114.00015 * 180.02562 * 28 26 16 49 49 H 1.08998 * 109.46369 * 305.85764 * 29 13 12 50 50 H 1.09005 * 109.45767 * 65.82359 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1985 -5.9795 0.0016 14 6 2.9635 -6.0173 1.2544 15 6 3.8398 -7.2715 1.2810 16 6 4.7907 -7.2494 0.0810 17 1 5.4498 -6.3844 0.1544 18 7 5.5919 -8.4758 0.0685 19 6 6.7241 -8.5484 0.7961 20 8 7.0794 -7.5987 1.4615 21 6 7.5451 -9.8122 0.7882 22 6 8.7648 -9.6337 1.6945 23 6 9.5979 -10.9169 1.6869 24 6 9.7365 -11.6771 3.0075 25 6 10.9278 -10.9003 2.4435 26 6 3.9714 -7.1603 -1.2095 27 1 4.6447 -7.1007 -2.0646 28 8 3.1458 -8.3203 -1.3315 29 6 3.0901 -5.9100 -1.1632 30 1 -0.4849 0.8400 -0.0004 31 1 0.3534 -2.3906 0.0005 32 1 0.6169 -4.9208 -0.8886 33 1 0.6175 -4.9205 0.8913 34 1 2.2755 -6.0369 2.0996 35 1 3.5952 -5.1315 1.3209 36 1 3.2080 -8.1582 1.2282 37 1 4.4192 -7.2913 2.2040 38 1 5.3077 -9.2355 -0.4634 39 1 6.9392 -10.6414 1.1536 40 1 7.8759 -10.0242 -0.2285 41 1 9.3706 -8.8045 1.3293 42 1 8.4340 -9.4216 2.7112 43 1 9.5476 -11.5046 0.7704 44 1 9.2337 -11.2633 3.8816 45 1 9.7771 -12.7653 2.9599 46 1 11.7522 -11.4773 2.0247 47 1 11.2091 -9.9751 2.9465 48 1 2.5981 -8.3313 -2.1284 49 1 2.4940 -5.8519 -2.0739 50 1 3.7211 -5.0247 -1.0852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099751003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:23 Heat of formation + Delta-G solvation = -100.545057 kcal Electronic energy + Delta-G solvation = -29867.443737 eV Core-core repulsion = 25702.007086 eV Total energy + Delta-G solvation = -4165.436652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28224 -39.28077 -38.00486 -37.56608 -35.47960 -34.61668 -33.82743 -32.58909 -31.44786 -30.96910 -29.64515 -27.21618 -25.38527 -24.30748 -23.00316 -22.68596 -22.32795 -20.70494 -20.30338 -19.82851 -19.28801 -17.97886 -17.10893 -16.77843 -16.47659 -16.00967 -15.95266 -15.58486 -15.14933 -14.75643 -14.61461 -14.51147 -14.34129 -13.97152 -13.77389 -13.63152 -13.28003 -13.16013 -12.73503 -12.59137 -12.37500 -12.08636 -11.89213 -11.68107 -11.60062 -11.47052 -11.40300 -11.27685 -11.16292 -10.98006 -10.73711 -10.62223 -10.48671 -10.36658 -10.27792 -10.18015 -9.89197 -9.67824 -9.47948 -9.21497 -8.95626 -8.03275 -7.40359 -6.48293 -3.89819 2.64069 3.11876 3.14759 3.21840 3.26229 3.48998 3.78822 4.11806 4.14526 4.35192 4.44852 4.53609 4.63122 4.69529 4.85663 4.93834 4.97106 5.01339 5.07527 5.17515 5.20455 5.27701 5.32947 5.41811 5.47232 5.59556 5.62298 5.69306 5.75837 5.79613 5.83357 5.86326 5.91530 6.00685 6.09419 6.11151 6.17852 6.20899 6.30679 6.49886 6.55022 6.72331 7.33214 7.40437 7.48303 7.54442 7.72869 7.97886 8.25030 8.52424 9.09852 9.45797 9.96222 10.67929 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.002093 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.564727 B =13375.736793 C =14478.737744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.102 0.898 9 N -0.554 5.554 10 C 0.404 3.596 11 O -0.595 6.595 12 C 0.041 3.959 13 N -0.502 5.502 14 C 0.045 3.955 15 C -0.115 4.115 16 C 0.156 3.844 17 H 0.098 0.902 18 N -0.721 5.721 19 C 0.507 3.493 20 O -0.541 6.541 21 C -0.136 4.136 22 C -0.074 4.074 23 C -0.154 4.154 24 C -0.182 4.182 25 C -0.182 4.182 26 C 0.107 3.893 27 H 0.058 0.942 28 O -0.557 6.557 29 C 0.003 3.997 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.403 0.597 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.376 0.624 49 H 0.069 0.931 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.901 -22.520 -1.284 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.120 0.880 9 N -0.189 5.189 10 C 0.190 3.810 11 O -0.482 6.482 12 C -0.091 4.091 13 N -0.225 5.225 14 C -0.084 4.084 15 C -0.153 4.153 16 C 0.051 3.949 17 H 0.116 0.884 18 N -0.372 5.372 19 C 0.293 3.707 20 O -0.417 6.417 21 C -0.176 4.176 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.219 4.219 25 C -0.219 4.219 26 C 0.047 3.953 27 H 0.076 0.924 28 O -0.362 6.362 29 C -0.125 4.125 30 H 0.083 0.917 31 H 0.226 0.774 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.238 0.762 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.223 0.777 49 H 0.088 0.912 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.834 -22.248 -0.264 24.747 hybrid contribution -0.325 1.463 -0.798 1.698 sum 10.509 -20.785 -1.062 23.315 Atomic orbital electron populations 1.69602 1.05955 1.28435 1.49833 1.25293 0.95633 0.99839 0.97004 0.85919 0.78808 0.80404 0.79124 1.19886 1.20890 1.19840 1.19670 0.93377 0.82403 1.47887 0.88000 1.42058 1.09316 1.04938 1.62620 1.21140 0.88832 0.86006 0.85061 1.90388 1.13944 1.86834 1.57055 1.22057 0.95485 0.88093 1.03463 1.62420 1.17809 1.39884 1.02391 1.22177 0.96578 0.97918 0.91688 1.21808 0.97089 0.99240 0.97206 1.21061 0.91480 0.87863 0.94457 0.88446 1.46054 1.24271 1.17727 1.49159 1.20762 0.80992 0.89760 0.79144 1.90733 1.70511 1.38910 1.41585 1.21646 0.97389 0.96217 1.02369 1.20921 0.94358 0.95569 1.00354 1.22362 0.99391 0.99343 0.96144 1.23055 1.02705 0.98794 0.97357 1.22966 0.91766 1.02686 1.04439 1.22084 0.91144 0.85819 0.96214 0.92431 1.86411 1.59401 1.42031 1.48391 1.23070 0.96805 0.98800 0.93857 0.91690 0.77358 0.89373 0.89309 0.91408 0.91331 0.90772 0.91743 0.76218 0.88871 0.89028 0.90751 0.90980 0.87777 0.88702 0.88986 0.88915 0.88680 0.77675 0.91217 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.40 9.07 7.20 -10.99 -0.08 8.99 16 11 O -0.59 -14.95 11.20 5.55 0.06 -14.89 16 12 C 0.04 0.71 5.86 -4.97 -0.03 0.68 16 13 N -0.50 -8.13 4.74 -236.11 -1.12 -9.25 16 14 C 0.04 0.76 5.09 -3.84 -0.02 0.74 16 15 C -0.11 -1.71 5.52 -26.65 -0.15 -1.86 16 16 C 0.16 2.20 2.30 -67.80 -0.16 2.04 16 17 H 0.10 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.72 -8.26 5.05 -53.68 -0.27 -8.53 16 19 C 0.51 6.27 7.80 -10.98 -0.09 6.18 16 20 O -0.54 -9.11 15.65 5.55 0.09 -9.03 16 21 C -0.14 -1.12 5.66 -27.88 -0.16 -1.28 16 22 C -0.07 -0.67 4.79 -26.73 -0.13 -0.80 16 23 C -0.15 -1.12 5.74 -90.62 -0.52 -1.64 16 24 C -0.18 -1.26 10.18 -26.73 -0.27 -1.53 16 25 C -0.18 -1.28 10.25 -26.73 -0.27 -1.55 16 26 C 0.11 1.35 3.43 -26.65 -0.09 1.26 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 O -0.56 -6.10 12.06 -35.23 -0.42 -6.53 16 29 C 0.00 0.05 4.63 -3.83 -0.02 0.03 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 34 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 35 H 0.07 1.41 6.00 -51.93 -0.31 1.09 16 36 H 0.07 1.09 7.80 -51.93 -0.41 0.69 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 3.69 8.12 -40.82 -0.33 3.35 16 39 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 43 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 44 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.38 2.88 9.08 45.56 0.41 3.30 16 49 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 50 H 0.10 1.84 5.36 -51.93 -0.28 1.56 16 LS Contribution 400.25 15.07 6.03 6.03 Total: -1.00 -32.11 400.25 -9.65 -41.77 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -7.44 Total: 18.24 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.22 Total: 3.38 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.72 Total: -54.86 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.28 Total: -30.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.11 -9.65 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099751003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.779 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds